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Info • Dekkera bruxellensis CBS 2499 v1.0
Please note that this organism is for archival use only. Please see the current Dekkera bruxellensis CBS 2499 v2.0 site for the latest data and information.

Status

This draft release was produced using Illumina data (2x76 300bp, 2x150 270bp, 2x100 4kb CLIP) and 15kb shredded data from a Newbler assembly and was assembled using the AllPathsLG assembler.

Summary statistics for the Dekkera bruxellensis CBS 2499 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 13.37
Sequencing read coverage depth 127.5
# of contigs 1374
# of scaffolds 84
# of scaffolds >= 2Kbp 45
Scaffold N50 3
Scaffold L50 (Mbp) 1.79
# of gaps 645
% of scaffold length in gaps 4.2%
Three largest Scaffolds (Mbp) 2.87, 2.05, 1.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Illumina RNAseq assemblies 9759 8359 85.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1631 1384
transcript 1537 1323
exon 1067 848
intron 216 86
description:
protein length (aa) 457 382
exons per gene 1.44 1
# of gene models 5600


Collaborators

Trevor Phister, Ph.D., North Carolina State University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.