Aspergillus niger ATCC 1015 v4.0

TRANSCRIPT ANNOTATION

Aspni7/chr_503:561684-564172 e_gw1.503.267.1 Hide

Attribute

Value

Creator

Action

Name

ASN55055

Monica Misra

Description

Zinc finger domains are nucleic acid-binding protein structures; they are composed of 25 to 30 amino-acid residues including 2 conserved Cys and 2 conserved His residues in a C-2-C-12-H-3-H type motif; a zinc finger motif is an unusually small, self-folding domain in which Zn is a crucial component of its tertiary structure; all bind 1 atom of Zn in a tetrahedral array to yield a finger-like projection, which interacts with nucleotides in the major groove of the nucleic acid; Zn binds to the conserved Cys and His residues.

Monica Misra

Model Notes	No issues	Monica Misra
	Annotation was copied from model jgi.t\|Aspni7\|55055 on 9/27/2013 by user 'automatic'.	AUTOMATIC

Defline	hypothetical protein	AUTOMATIC
	hypothetical protein containing Zn-finger, C2H2 type domain	Monica Misra

Disposition

Catalog

AUTOMATIC

Literature

PMID: 3125980

Monica Misra

Assessment

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 1092554

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

function

3676 Interacting selectively with any nucleic acid.	IPR007087 Zinc finger, C2H2-type
8270 Interacting selectively with zinc (Zn) ions.	IPR007087 Zinc finger, C2H2-type

component

5622 The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

IPR007087 Zinc finger, C2H2-type

kog

KOG2789 Putative Zn-finger protein
General function prediction only

High Scoring Alignments
gi\|350633224\|gb\|EHA21590.1\| hypothetical protein ASPNIDRAFT_55055 [Aspergillus niger ATCC 1015] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	3143	0.0	84%	100%	100%

gi\|317036365\|ref\|XP_001398189.2\| protein sip5 [Aspergillus niger CBS 513.88] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	3135	0.0	83%	100%	100%

aor:AO090103000033 putative Zn-finger protein [ Aspergillus oryzae] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	3059	0.0	75%	100%	100%

gi\|121797748\|sp\|Q2TZ06\|SIP5_ASPOR RecName: Full=Protein sip5 [Aspergillus oryzae RIB40] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	3059	0.0	75%	100%	100%

gi\|189046714\|sp\|A1DB29\|SIP5_NEOFI RecName: Full=Protein sip5 [Neosartorya fischeri NRRL 181] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2968	0.0	73%	100%	100%

afm:Afu8g04180 hypothetical protein [ Aspergillus fumigatus Af293] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2948	0.0	73%	100%	100%

gi\|74667257\|sp\|Q4WCJ7\|SIP5_ASPFU RecName: Full=Protein sip5 [Aspergillus fumigatus Af293] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2948	0.0	73%	100%	100%

gi\|189046776\|sp\|B0YA45\|SIP5_ASPFC RecName: Full=Protein sip5 [Aspergillus fumigatus A1163] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2943	0.0	73%	100%	100%

gi\|189046777\|sp\|Q0D205\|SIP5_ASPTN RecName: Full=Protein sip5 [Aspergillus terreus NIH2624] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2917	0.0	75%	100%	100%

gi\|189046775\|sp\|A1C3V7\|SIP5_ASPCL RecName: Full=Protein sip5 [Aspergillus clavatus NRRL 1] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2884	0.0	72%	100%	100%