Aspergillus niger ATCC 1015 v4.0

TRANSCRIPT ANNOTATION

Aspni7/chr_601:896157-898348 estExt_Genewise1.C_chr_601_t20170 Hide

Attribute

Value

Creator

Action

Name

ASN50680

Monica Misra

Description

Zinc finger domains are nucleic acid-binding protein structures; they are composed of 25 to 30 amino-acid residues including 2 conserved Cys and 2 conserved His residues in a C-2-C-12-H-3-H type motif; a zinc finger motif is an unusually small, self-folding domain in which Zn is a crucial component of its tertiary structure; all bind 1 atom of Zn in a tetrahedral array to yield a finger-like projection, which interacts with nucleotides in the major groove of the nucleic acid; Zn binds to the conserved Cys and His residues.

Monica Misra

Model Notes	No issues	Monica Misra
	Annotation was copied from model jgi.t\|Aspni7\|50680 on 9/27/2013 by user 'automatic'.	AUTOMATIC

Defline	hypothetical protein	AUTOMATIC
	hypothetical protein containing Zn-finger, C2H2 type domain	Monica Misra

Disposition

Catalog

AUTOMATIC

Literature

PMID: 3125980

Monica Misra

Assessment

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 1110038

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

function

3676 Interacting selectively with any nucleic acid.	IPR007087 Zinc finger, C2H2-type
8270 Interacting selectively with zinc (Zn) ions.	IPR007087 Zinc finger, C2H2-type

component

5622 The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

IPR007087 Zinc finger, C2H2-type

kog

KOG2505 Ankyrin repeat protein
General function prediction only

High Scoring Alignments
gi\|350632833\|gb\|EHA21200.1\| hypothetical protein ASPNIDRAFT_50680 [Aspergillus niger ATCC 1015] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2767	0.0	91%	96%	96%

gi\|317028218\|ref\|XP_001390289.2\| C2H2 finger and ankyrin domain protein [Aspergillus niger CBS 513.88] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2746	0.0	90%	96%	96%

gi\|134057970\|emb\|CAK47847.1\| unnamed protein product [Aspergillus niger] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2723	0.0	90%	92%	95%

gi\|358374724\|dbj\|GAA91314.1\| C2H2 finger and ankyrin domain protein, partial [Aspergillus kawachii IFO 4308] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2585	0.0	85%	89%	95%

aor:AO090701000709 ankyrin repeat protein [ Aspergillus oryzae] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2500	0.0	76%	100%	100%

afm:Afu5g07960 hypothetical protein [ Aspergillus fumigatus Af293] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2447	0.0	74%	100%	100%

ani:AN7736.2 hypothetical protein [ Aspergillus nidulans FGSC A4] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2365	0.0	72%	99%	100%

gi\|115433628\|ref\|XP_001216951.1\| conserved hypothetical protein [Aspergillus terreus NIH2624] >gi\|114189803\|gb\|EAU31503.1\| conserved hypothetical protein [Aspergillus terreus NIH2624] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2022	0.0	67%	92%	92%

gi\|255949448\|ref\|XP_002565491.1\| Pc22g15750 [Penicillium chrysogenum Wisconsin 54-1255] >gi\|211592508\|emb\|CAP98863.1\| Pc22g15750 [Penicillium chrysogenum Wisconsin 54-1255] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1981	0.0	60%	96%	96%

gi\|70998228\|ref\|XP_753840.1\| C2H2 finger and ankyrin domain protein [Aspergillus fumigatus Af293] >gi\|66851476\|gb\|EAL91802.1\| C2H2 finger and ankyrin domain protein, putative [Aspergillus fumigatus Af293] >gi\|159126423\|gb\|EDP51539.1\| C2H2 finger and ankyrin domain protein, putative [Aspergillus fumigatus A1163] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1977	0.0	63%	95%	95%