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Help Home > The KOG Browser > Viewing Lists of Predicted Genes

Viewing Lists of Predicted Genes

You can view a list of predicted genes (gene models) in a KOG or KOG classification by clicking the corresponding number of gene models on the KOG entry page.

The name of the KOG group appears as the page heading for the list of gene models. Below it is the name of the KOG classification. To return to the classification list with the current classification expanded, click the KOG classification heading.

The list of gene models includes:

  • Prot name JGI's name for the predicted gene. If the gene was predicted by another center, the name is the one assigned by that center.
  • Prot Id The internal JGI identification number for the predicted gene, a link to the Protein page for that gene.
  • KOG Id The KOG identification number for the KOG to which the gene is annotated.
  • KOG description The description of the KOG to which the gene is annotated.
  • Curated? "Yes" or "No" both link to the annotation, with the current Transcript details if available. From here you can login to annotate the Transcript.

Quick Tip

  • To see the Protein page for a specific gene model, click its Prot Id.

At the bottom of the list are buttons for retrieving FASTA sequences or ClustalW alignments.

To retrieve sequence in FASTA format:

  1. Click the check box next to each gene for which you want to retrieve sequence.
  2. Click Retrieve FASTA.

To retrieve a ClustalW alignment:

  1. Click the check box next to each gene that you want to include in the alignment. (You must choose more than one gene.)
  2. Click Clustalw.

To clear your selections, click Uncheck all.