PFAM Domains • Cadophora sp. DSE1049 v1.0
Annotations/GenomesAmore1Botci1Cadsp1Melbi2Oidma1Perma1Sclsc1TotalAnnotation Description
PFAMs
7,3267,96114,03211,47112,26911,7397,95772,755
117 transmembrane receptor (rhodopsin family)
40466775596539391ATPase family associated with various cellular activities (AAA)
36528264756445418ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
1412161414151499Elongation factor Tu GTP binding domain
10918161512989Helix-loop-helix DNA-binding domain
229453227Hsp20/alpha crystallin family
8812899761Hsp70 protein
810131088966KH domain
11111117SH2 domain
24232729232423173SH3 domain
107101010101067Actin
326619425514815847900Ankyrin repeat
36655429PAN domain
777776748ADP-ribosylation factor family
12162624321110131Eukaryotic aspartyl protease
445445430Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
11111117Cytochrome c
21232313Double-stranded RNA binding motif
19202417181620134EF hand
121111294Fe-4S binding domain
328232222Fibronectin type III domain
111115Globin
7152621332112135Glutathione S-transferase, C-terminal domain
12121119Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
7713878757Homeodomain
224433220lactate/malate dehydrogenase, NAD binding domain
455454532Myosin head (motor domain)
65114214168170299841,114Cytochrome P450
12095190180128162108983Protein kinase domain
14193825292614165Pyridine nucleotide-disulphide oxidoreductase
23213433302725193Ras family
16212925162222151Response regulator receiver domain
33153105993RNase H
63586968556458435RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
197089Reverse transcriptase (RNA-dependent DNA polymerase)
123Serpin (serine protease inhibitor)
122224215Copper/zinc superoxide dismutase (SODC)
212132112Iron/manganese superoxide dismutases, alpha-hairpin domain
2436131316589Subtilase family
47702061381549755767Sugar (and other) transporter
11913141111978Thioredoxin
113237219Trypsin
454465432Tubulin/FtsZ family, GTPase domain
325945230von Willebrand factor type A domain
5250148139948154618Zinc finger, C2H2 type
41376559486939358Zinc finger, C3HC4 type (RING finger)
729851264125Zinc knuckle
332234320Protein-tyrosine phosphatase
80108303175256226791,227short chain dehydrogenase
41591449413411354639Zinc-binding dehydrogenase
658777545Thiolase, N-terminal domain
8222532506422223Beta-ketoacyl synthase, N-terminal domain
5488464392Fe-2S iron-sulfur cluster binding domain
1113Papain family cysteine protease
121231111Enolase, C-terminal TIM barrel domain
78107710857Glutamine amidotransferase class-I
1010111010101071TCP-1/cpn60 chaperonin family
337555331Glutamine synthetase, catalytic domain
212222112Triosephosphate isomerase
14142323161912121E1-E2 ATPase
8910999862Core histone H2A/H2B/H3/H4
121217Copper binding proteins, plastocyanin/azurin family
4877510950Alpha amylase, catalytic domain
222213214Phorbol esters/diacylglycerol binding domain (C1 domain)
8878912759Bacterial transferase hexapeptide (six repeats)
353333424tRNA synthetases class I (I, L, M and V)
7611676649Cyclin, N-terminal domain
11378343644816302Carboxylesterase family
45444425DNA polymerase family B
446654433ATP synthase subunit C
3395512340Peroxidase
56332537194129Beta-lactamase
465442530C-5 cytosine-specific DNA methylase
28242935303120197Calcineurin-like phosphoesterase
8102619171213105Cellulase (glycosyl hydrolase family 5)
778799754tRNA synthetases class II (D, K and N)
37354741424536283Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
14202616242214136Aminotransferase class I and II
7910111111867Phosphoribosyl transferase domain
1011101010111072Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222221213Ribosomal protein S12/S23
2111117Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
9101914912881C2 domain
18151919171817123PH domain
10712112010878bZIP transcription factor
18153626452413177Aldehyde dehydrogenase family
152109483329469358931,993Fungal Zn(2)-Cys(6) binuclear cluster domain
22173325372720181Cytochrome b5-like Heme/Steroid binding domain
226323220Oxidoreductase molybdopterin binding domain
16142517182211123Oxidoreductase NAD-binding domain
24273342313125213SNF2 family N-terminal domain
231222214Ribosomal protein S7p/S5e
20192427222323158Ubiquitin-conjugating enzyme
6610798551Isocitrate/isopropylmalate dehydrogenase
222212213Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222232215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
221211110Dihydrofolate reductase
3510836742Chitin recognition protein
236424324Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
2313457135Cupin
221222112Annexin
14211110Eukaryotic-type carbonic anhydrase
1122118Chalcone and stilbene synthases, N-terminal domain
3334333222-oxoacid dehydrogenases acyltransferase (catalytic domain)
3787115849Catalase
112217Disintegrin
144110UDP-glucoronosyl and UDP-glucosyl transferase
7617131511675Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
44129147454Thiamine pyrophosphate enzyme, central domain
434554328Lyase
222332216Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
134Sodium:neurotransmitter symporter family
112221110Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11211118Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
11213715Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
811121210131076Kinesin motor domain
28313735283732228DnaJ domain
1414141414141498Proteasome subunit
311141069962Major intrinsic protein
11111117ATP synthase
2584134339Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
11111117Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
1113211712151099Ubiquitin family
545545533Cofilin/tropomyosin-type actin-binding protein
22223311514-3-3 protein
226325222Alkaline phosphatase
134119322Zinc carboxypeptidase
22358149684325323Aldo/keto reductase family
16151617171814113Myb-like DNA-binding domain
444534428Forkhead domain
26345121Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
222222214Ribosomal protein S14p/S29e
335435326FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
222211212
11Dehydrin
981281311667Flavodoxin
11111117Calreticulin family
491811725478Common central domain of tyrosinase
761111139966Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
42394742374640293DEAD/DEAH box helicase
76688891818777568Helicase conserved C-terminal domain
1122118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
13111119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
222222214Ribosomal protein L5
6588138654Pyridoxal-dependent decarboxylase conserved domain
325333322Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
878778651Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
9815111311875Pyridoxal-phosphate dependent enzyme
12112621171611114NUDIX domain
545757437pfkB family carbohydrate kinase
318201621517100Glycosyl hydrolases family 28
1211117Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
15142217161616116Histidine phosphatase superfamily (branch 1)
11112118Thymidylate synthase
321129Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
545545533Calponin homology (CH) domain
446466434Glutamine amidotransferases class-II
212222213Ribosomal protein S15
121211210Thaumatin family
11111218Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
3111653332SRF-type transcription factor (DNA-binding and dimerisation domain)
8881186958GATA zinc finger
31387061545736347Amino acid permease
3353106333Prolyl oligopeptidase family
212123213Ribosomal protein L30p/L7e
91012129111073Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
547466436Aconitase family (aconitate hydratase)
128426225Glycosyl hydrolase family 10
444434528Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
1211117Nucleoside diphosphate kinase
11Tetraspanin family
212221111Ribosomal protein S10p/S20e
5355105437Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
1111116SecY translocase
11211118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
3333107433Polyprenyl synthetase
454555432Hexokinase
341311713455Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
446558436Rieske [2Fe-2S] domain
3115Phytochrome region
10811101010867Biotin-requiring enzyme
12111219Phosphofructokinase
222222214Ribosomal protein S17
112225114Hydroxymethylglutaryl-coenzyme A reductase
334433424FGGY family of carbohydrate kinases, N-terminal domain
112Sodium:dicarboxylate symporter family
1111241619812101Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
85121099659Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
7151211781979Chromo (CHRromatin Organisation MOdifier) domain
213323216Phosphatidylinositol-specific phospholipase C, Y domain
333324220Phosphatidylinositol-specific phospholipase C, X domain
841611711461D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
333332219Malic enzyme, N-terminal domain
2132122136-phosphogluconate dehydrogenase, C-terminal domain
1112273226218137Multicopper oxidase
11101210149975WW domain
11111117Ribosomal RNA adenine dimethylase
121113110Yeast PIR protein repeat
10698163135146118116882WD domain, G-beta repeat
748966545Heavy-metal-associated domain
11Transferrin
345435327Adenylate kinase
212233215Phosphoglucomutase/phosphomannomutase, C-terminal domain
222122213Ribosomal protein S8
11111117Ribosomal protein S11
444445328LIM domain
3126Matrixin
233321317Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
11REV protein (anti-repression trans-activator protein)
222333217chorismate binding enzyme
32433432260s Acidic ribosomal protein
444556432Prenyltransferase and squalene oxidase repeat
658556338Protein kinase C terminal domain
11111117Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
7710968754Bromodomain
1311211319159101Acyl-CoA dehydrogenase, C-terminal domain
15151515151515105Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
244452324Ribonuclease T2 family
333333321HSF-type DNA-binding
232222215SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
91119161214990Serine carboxypeptidase
888888755Phosphatidylinositol 3- and 4-kinase
126442120Transketolase, thiamine diphosphate binding domain
245810332Glycosyl hydrolases family 11
233346324Inositol monophosphatase family
434434426Glutaredoxin
449545334Isocitrate lyase family
224222216Serine hydroxymethyltransferase
323466226Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
242224420KOW motif
1111116Ribosomal protein L34
212222213RF-1 domain
626433125Sodium:solute symporter family
11121118Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
557656539Protein phosphatase 2C
222323216Nucleotidyl transferase
4478115241Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
571210118659Fatty acid desaturase
666666642MutS domain V
11112118Delta-aminolevulinic acid dehydratase
646555435Arginase family
666666642MCM P-loop domain
122312213Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
9881079556FHA domain
32587363759541437AMP-binding enzyme
333436325G-protein alpha subunit
78118711759HMG (high mobility group) box
11172622131815122His Kinase A (phospho-acceptor) domain
333333321Armadillo/beta-catenin-like repeat
24264446722826266Tetratricopeptide repeat
343433121Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
99121111141177BRCA1 C Terminus (BRCT) domain
5510979752Glycosyl transferases group 1
559779547Glycosyl transferase family 2
219426226SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
716124434Pectate lyase
11113119ribonuclease
11111117Urease, gamma subunit
644444430CoA-ligase
8262229466519215Phosphopantetheine attachment site
223423319Formyl transferase
119111010111072Metallopeptidase family M24
18101717141416106Leucine Rich Repeat
33359151867128395alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
443443426PB1 domain
223222215Staphylococcal nuclease homologue
117111010111070Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
354645431Zinc finger, ZZ type
2111319HRDC domain
971110109864CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
343333423S1 RNA binding domain
1111116HIUase/Transthyretin family
464846335AhpC/TSA family
444544631tRNA synthetases class I (W and Y)
2122119UvrD/REP helicase N-terminal domain
547565537Rhodanese-like domain
222322114Universal stress protein family
35367669766231385Acetyltransferase (GNAT) family
21111118SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
223222215AIR synthase related protein, N-terminal domain
9989108760tRNA synthetase class II core domain (G, H, P, S and T)
11111218SpoU rRNA Methylase family
212222213Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1211218PDZ domain
65145157355Class II Aldolase and Adducin N-terminal domain
434444427Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
445535430Fes/CIP4, and EFC/F-BAR homology domain
366444532IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
457744435Phospholipase D Active site motif
122114112Regulator of G protein signaling domain
444443427GTPase-activator protein for Ras-like GTPase
447544432RasGEF domain
446544431RasGEF N-terminal motif
889888857RhoGAP domain
656766440RhoGEF domain
343332321SPRY domain
333333321RNA polymerase Rpb1, domain 2
212222112Guanylate kinase
545444329Gelsolin repeat
61054810952UBA/TS-N domain
17152321171716126PHD-finger
11Filamin/ABP280 repeat
11111117GGL domain
666665641HECT-domain (ubiquitin-transferase)
312231315Helix-hairpin-helix motif
11211118MSP (Major sperm protein) domain
4665411339Ribonuclease III domain
222222113Region in Clathrin and VPS
233322318RanBP1 domain
222222113PPIC-type PPIASE domain
424341321Zn-finger in Ran binding protein and others
19151825181916130Zinc finger C-x8-C-x5-C-x3-H type (and similar)
112312111Poly(ADP-ribose) polymerase catalytic domain
11111218Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
614093756914140519F-box domain
11111117Elongation factor 1 gamma, conserved domain
445655433Calpain family cysteine protease
323231216Copper fist DNA binding domain
546555535CRAL/TRIO domain
1323473252614160BTB/POZ domain
213542118Ricin-type beta-trefoil lectin domain
11211118Inhibitor of Apoptosis domain
334433323Voltage gated chloride channel
3241043127Caspase domain
47311819139101GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
16274031413522212ABC transporter transmembrane region
2013455Integrase core domain
87127912560FAD binding domain
31411101728790Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11112118HAMP domain
222222214ribosomal L5P family C-terminus
556676439Insulinase (Peptidase family M16)
333443323Dehydrogenase E1 component
11111117Lumazine binding domain
656666641Elongation factor G C-terminus
545466434HMGL-like
444445429DnaJ central domain
232322317Starch binding domain
222323216Ribosomal protein L1p/L10e family
581212710660Cation transporting ATPase, C-terminus
791411911869Cation transporter/ATPase, N-terminus
11221119dUTPase
537466334Aconitase C-terminal domain
443343324Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
8222629506619220Acyl transferase domain
11111117Urease beta subunit
339687541Dihydrodipicolinate synthetase family
27274844404327256haloacid dehalogenase-like hydrolase
32116149146Glycosyl hydrolases family 2
1072624272112127Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11114Acylphosphatase
11111117Adenylosuccinate synthetase
124123215Asparaginase, N-terminal
311323215Peptidase S24-like
11111117Inorganic pyrophosphatase
911161310101079Glycosyl hydrolases family 16
343344425Glycosyl hydrolases family 15
7817121013572NADH:flavin oxidoreductase / NADH oxidase family
4153431213-hydroxyacyl-CoA dehydrogenase, C-terminal domain
213345119Glycosyl hydrolase family 20, catalytic domain
443445428HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
9274526264921203GMC oxidoreductase
224244220Asparagine synthase
2142813351917128Fungal cellulose binding domain
657556539Septin
1122118EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
1210433124Flavin-binding monooxygenase-like
334533324tRNA synthetases class I (E and Q), catalytic domain
214442118tRNA synthetases class I (R)
434444326XPG N-terminal domain
811271423157105Metallo-beta-lactamase superfamily
2324112F5/8 type C domain
232423622Choline/Carnitine o-acyltransferase
11311119Putative esterase
12111118Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
121231111Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
35158109555Dioxygenase
223353220CNH domain
123231315Diacylglycerol kinase catalytic domain
779689652Dual specificity phosphatase, catalytic domain
222323216P21-Rho-binding domain
1210121211131181PX domain
335542325Ras association (RalGDS/AF-6) domain
645646435UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
222232215DAHP synthetase I family
1413211310131094Carbon-nitrogen hydrolase
1424314N-acetyltransferase
11111117Prephenate dehydratase
533455328Syntaxin
556555536Pumilio-family RNA binding repeat
666666642Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
222222214Glycoprotease family
212221111Histidinol dehydrogenase
435444529impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11112118Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
38585332Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
544654432Histone deacetylase domain
136459331POT family
11111117PWWP domain
18193624163015158SET domain
7818121812984Isochorismatase family
435824430Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
474635635XPG I-region
11111218Acetokinase family
224313217DNA photolyase
213NlpC/P60 family
11Cation-independent mannose-6-phosphate receptor repeat
1112229Nitroreductase family
341441111249Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
222222214Acyl CoA binding protein
445454430Cullin family
1382015241610106FAD binding domain
314171733407131O-methyltransferase domain
334667231EamA-like transporter family
211212110
889888857ThiF family
11111117Ribosomal family S4e