PFAM Domains • Syncephalis plumigaleata NRRL S24 v1.0
Annotations/GenomesBasme2finSCCoere1Conco1Linpe1Marpt1Rambr1Synplu1TotalAnnotation Description
PFAMs
14,0975,7667,0716,7866,2966,4507,56354,029
2221257 transmembrane receptor (rhodopsin family)
67363440374036290ATPase family associated with various cellular activities (AAA)
93573184436146415ABC transporter
1444444438ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
22151614151714113Elongation factor Tu GTP binding domain
4013121111139109Helix-loop-helix DNA-binding domain
710219Hsp20/alpha crystallin family
257107710672Hsp70 protein
1711911118875KH domain
33Kunitz/Bovine pancreatic trypsin inhibitor domain
2111117SH2 domain
59182722222314185SH3 domain
131081110141076Actin
4320282119124147Ankyrin repeat
11PAN domain
2177879867ADP-ribosylation factor family
19435612352Eukaryotic aspartyl protease
935332429Cyclic nucleotide-binding domain
22Cytochrome b(C-terminal)/b6/petD
112Cytochrome b/b6/petB
511221113Cytochrome c
211138Double-stranded RNA binding motif
5517241614251152EF hand
11111164Fe-4S binding domain
11Fibronectin type II domain
3115Fibronectin type III domain
11Globin
2252877383110Glutathione S-transferase, C-terminal domain
511112112Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
3972786166109Homeodomain
11Laminin EGF domain
2143572345lactate/malate dehydrogenase, NAD binding domain
15712786863Myosin head (motor domain)
451213464825136424Cytochrome P450
2479411099931282321,003Protein kinase domain
341115111489102Pyridine nucleotide-disulphide oxidoreductase
79212825223028233Ras family
4228523971Response regulator receiver domain
2214124227RNase H
114656070665679510RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Reverse transcriptase (RNA-dependent DNA polymerase)
819Serpin (serine protease inhibitor)
723338733Copper/zinc superoxide dismutase (SODC)
421223216Iron/manganese superoxide dismutases, alpha-hairpin domain
737461065059251Subtilase family
7810102718811162Sugar (and other) transporter
23121612121513103Thioredoxin
22Trefoil (P-type) domain
3015742727519233Trypsin
14410448650Tubulin/FtsZ family, GTPase domain
11von Willebrand factor type A domain
22532694033499457Zinc finger, C2H2 type
71463746546711332Zinc finger, C3HC4 type (RING finger)
128148511563Zinc knuckle
732232423Protein-tyrosine phosphatase
50305954433426296short chain dehydrogenase
5815321914229169Zinc-binding dehydrogenase
644544532Thiolase, N-terminal domain
69324242169Beta-ketoacyl synthase, N-terminal domain
13446533382Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
31111119Enolase, C-terminal TIM barrel domain
224Cytochrome C and Quinol oxidase polypeptide I
1177778855Glutamine amidotransferase class-I
1599101091072TCP-1/cpn60 chaperonin family
112ATP synthase A chain
612112215Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
67203434241922220E1-E2 ATPase
2413913910684Core histone H2A/H2B/H3/H4
121215Copper binding proteins, plastocyanin/azurin family
512111112Alpha amylase, catalytic domain
248443530Phorbol esters/diacylglycerol binding domain (C1 domain)
1263566543Bacterial transferase hexapeptide (six repeats)
744444633tRNA synthetases class I (I, L, M and V)
60161010101411131Cyclin, N-terminal domain
81111517Carboxylesterase family
445445430DNA polymerase family B
743233325ATP synthase subunit C
412112112Peroxidase
222024Beta-lactamase
534221118C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
45182422201421164Calcineurin-like phosphoesterase
214126319Cellulase (glycosyl hydrolase family 5)
667666744tRNA synthetases class II (D, K and N)
90343537374237312Mitochondrial carrier protein
33151619151314125Aminotransferase class I and II
181088910568Phosphoribosyl transferase domain
191413141271291Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11Ribosome inactivating protein
31111119Phosphoglycerate kinase
522112215Ribosomal protein S4/S9 N-terminal domain
1023222223Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
5353077914125C2 domain
81152818151412183PH domain
2279654659bZIP transcription factor
16812179141187Aldehyde dehydrogenase family
52241202528177273Fungal Zn(2)-Cys(6) binuclear cluster domain
61172215181517165Cytochrome b5-like Heme/Steroid binding domain
811111114Oxidoreductase molybdopterin binding domain
2889211211695Oxidoreductase NAD-binding domain
30171320151618129SNF2 family N-terminal domain
1022222222Ribosomal protein S7p/S5e
31191518191820140Ubiquitin-conjugating enzyme
955555539Isocitrate/isopropylmalate dehydrogenase
722223220Ribosomal Proteins L2, RNA binding domain
13610Chitinase class I
122223315Hsp90 protein
322222215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11211118Dihydrofolate reductase
42112147Chitin recognition protein
368221511927128Cysteine-rich secretory protein family
61112112Ribosomal protein S3, C-terminal domain
22Cupin
112Annexin
325Eukaryotic-type carbonic anhydrase
6343333252-oxoacid dehydrogenases acyltransferase (catalytic domain)
1231222224Catalase
2121118Disintegrin
740956UDP-glucoronosyl and UDP-glucosyl transferase
1033432227Aminotransferase class-III
722222219Ribosomal protein S19
31111119DNA gyrase B
1522222227Thiamine pyrophosphate enzyme, central domain
534333324Lyase
1632432232Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
5218Ferritin-like domain
312111110Adenylate and Guanylate cyclase catalytic domain
21111118ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
611113114Pyruvate kinase, barrel domain
26151511111218108Kinesin motor domain
46262327273029208DnaJ domain
18141414141414102Proteasome subunit
2531153451Major intrinsic protein
21111219ATP synthase
7222232203'5'-cyclic nucleotide phosphodiesterase
1121117Profilin
821222219Ribosomal protein L22p/L17e
721222218Ribosomal protein L14p/L23e
29131418141010108Ubiquitin family
734553532Cofilin/tropomyosin-type actin-binding protein
62222542314-3-3 protein
837654134Alkaline phosphatase
73014455Zinc carboxypeptidase
175271791910104Aldo/keto reductase family
46211621192311157Myb-like DNA-binding domain
1843545342Forkhead domain
55Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
622222218Ribosomal protein S14p/S29e
1035543434FKBP-type peptidyl-prolyl cis-trans isomerase
416111115Glutathione peroxidase
41112110
33613271473103Flavodoxin
11Tropomyosin
222223215Calreticulin family
307451092422147Common central domain of tyrosinase
1548546749Aminotransferase class-V
31111119Ribonucleotide reductase, small chain
63373941393943301DEAD/DEAH box helicase
105636063616864484Helicase conserved C-terminal domain
1113Fructose-bisphosphate aldolase class-I
21211119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
622222218Ribosomal protein L23
31211210Pyridoxal-dependent decarboxylase, C-terminal sheet domain
62122215Ribosomal protein L5
856554336Pyridoxal-dependent decarboxylase conserved domain
412111313Citrate synthase, C-terminal domain
1254664542GHMP kinases N terminal domain
1057566746Biotin carboxylase, N-terminal domain
222111110Tryptophan synthase alpha chain
1399897863Pyridoxal-phosphate dependent enzyme
2110161011131192NUDIX domain
653457434pfkB family carbohydrate kinase
622223219Ribosomal protein L3
922222120Ribosomal protein L11, RNA binding domain
1966764553Histidine phosphatase superfamily (branch 1)
2111117Thymidylate synthase
1444445439ATP synthase alpha/beta chain, C terminal domain
1459667754Calponin homology (CH) domain
1545555342Glutamine amidotransferases class-II
521422218Ribosomal protein S15
2111117'Cold-shock' DNA-binding domain
99Thaumatin family
21111118Fructose-1-6-bisphosphatase, N-terminal domain
21111118Ribonucleotide reductase, all-alpha domain
423222217Ribosomal protein S2
1333442231SRF-type transcription factor (DNA-binding and dimerisation domain)
5214191813810134GATA zinc finger
35714151215199Amino acid permease
2491510101731116Prolyl oligopeptidase family
522111214Ribosomal protein L30p/L7e
8661093951Histidine phosphatase superfamily (branch 2)
2111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
846443433Aconitase family (aconitate hydratase)
64344223Glycosyl hydrolases family 17
922122220Ribosomal protein S5, N-terminal domain
654546333Nucleoside diphosphate kinase
1223122224Tetraspanin family
312222214Ribosomal protein S10p/S20e
93914126188160Arrestin (or S-antigen), N-terminal domain
11111128Phosphoglucose isomerase
3111118Carbohydrate phosphorylase
21111219SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
622322219Ribosomal protein L6
533347227Polyprenyl synthetase
1342333230Hexokinase
943443532Dynamin family
211212211Biopterin-dependent aromatic amino acid hydroxylase
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
913111218Rieske [2Fe-2S] domain
33Bacterial regulatory proteins, lacI family
123Proton-conducting membrane transporter
1379997761Biotin-requiring enzyme
11111117Phosphofructokinase
822222220Ribosomal protein S17
111141110Hydroxymethylglutaryl-coenzyme A reductase
421331115FGGY family of carbohydrate kinases, N-terminal domain
95111118Sodium:dicarboxylate symporter family
15569791061Enoyl-CoA hydratase/isomerase
732222220Ribosomal protein S9/S16
353452224Transcription factor TFIIB repeat
1585973552Cytidine and deoxycytidylate deaminase zinc-binding region
21111118Molybdopterin oxidoreductase
15109971152Chromo (CHRromatin Organisation MOdifier) domain
21111118Phosphatidylinositol-specific phospholipase C, Y domain
311111210Phosphatidylinositol-specific phospholipase C, X domain
723223524D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
531531119Malic enzyme, N-terminal domain
4111111106-phosphogluconate dehydrogenase, C-terminal domain
7131201859Multicopper oxidase
19675414964WW domain
322223317Ribosomal RNA adenine dimethylase
199120108122120108127904WD domain, G-beta repeat
15229510447Heavy-metal-associated domain
11Dockerin type I domain
535333426Adenylate kinase
321222315Phosphoglucomutase/phosphomannomutase, C-terminal domain
422222216Ribosomal protein S8
722222219Ribosomal protein S11
773779545LIM domain
421212517Regulator of chromosome condensation (RCC1) repeat
722122218Ribosomal protein S13/S18
11
222222214chorismate binding enzyme
163322333260s Acidic ribosomal protein
544444530Prenyltransferase and squalene oxidase repeat
1375675346Protein kinase C terminal domain
1111116Single-strand binding protein family
711111113S-adenosylmethionine synthetase, N-terminal domain
13128111111874Bromodomain
2461556111178Acyl-CoA dehydrogenase, C-terminal domain
26151822151515126Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
9191453445Ribonuclease T2 family
195167514470HSF-type DNA-binding
322222215SRP54-type protein, GTPase domain
7121112Urease alpha-subunit, N-terminal domain
9811121414472Serine carboxypeptidase
1086978654Phosphatidylinositol 3- and 4-kinase
411111110Transketolase, thiamine diphosphate binding domain
111115WHEP-TRS domain
221212212Inositol monophosphatase family
655669542Glutaredoxin
412111111Isocitrate lyase family
422222216Serine hydroxymethyltransferase
111115Iron-containing alcohol dehydrogenase
632212218Ribosomal protein L10
2665563758KOW motif
2111117Ribosomal protein L34
112Ribosomal protein L33
332343321RF-1 domain
511121112Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
21111118IMP dehydrogenase / GMP reductase domain
421221113Glucose-6-phosphate dehydrogenase, NAD binding domain
1856455750Protein phosphatase 2C
822332323Nucleotidyl transferase
711126119Carbonic anhydrase
221222314Phosphoribulokinase / Uridine kinase family
1166777549Fatty acid desaturase
1065965445MutS domain V
11111117Delta-aminolevulinic acid dehydratase
21111118Arginase family
888888654MCM P-loop domain
211121210Squalene/phytoene synthase
189513116668FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
64244539442116253AMP-binding enzyme
2127224240G-protein alpha subunit
361962114128116HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
2816212444His Kinase A (phospho-acceptor) domain
1363664341Armadillo/beta-catenin-like repeat
54192224212219181Tetratricopeptide repeat
18213344347Ion transport protein
31111119DNA gyrase/topoisomerase IV, subunit A
1685889660BRCA1 C Terminus (BRCT) domain
954655539Glycosyl transferases group 1
1121222222Glycosyl transferase family 2
91312218SAM domain (Sterile alpha motif)
21126linker histone H1 and H5 family
2111117Ribosomal protein L7/L12 C-terminal domain
11ribonuclease
7121112Urease, gamma subunit
733333325CoA-ligase
31210222251Phosphopantetheine attachment site
232322216Formyl transferase
118998111268Metallopeptidase family M24
4114211417265138Leucine Rich Repeat
3815262623215154alpha/beta hydrolase fold
944435332RNA polymerase Rpb2, domain 6
1446339746PB1 domain
212229Staphylococcal nuclease homologue
3191412101116103Rab-GTPase-TBC domain
11114Tudor domain
3111118WH1 domain
633333425Zinc finger, ZZ type
31111119HRDC domain
2511101113121395CBS domain
521222216Ribosomal protein L13
522324220Ribosomal protein L4/L1 family
11111117Clp protease
634444429S1 RNA binding domain
31231111HIUase/Transthyretin family
1434237336AhpC/TSA family
545446432tRNA synthetases class I (W and Y)
1315UvrD/REP helicase N-terminal domain
2465585558Rhodanese-like domain
542412523Universal stress protein family
46132517162013150Acetyltransferase (GNAT) family
21211119SecE/Sec61-gamma subunits of protein translocation complex
11111218C-terminal regulatory domain of Threonine dehydratase
222223316AIR synthase related protein, N-terminal domain
1291010109868tRNA synthetase class II core domain (G, H, P, S and T)
11411210SpoU rRNA Methylase family
523222117Tetrapyrrole (Corrin/Porphyrin) Methylases
12121119Glycosyl transferase family, a/b domain
4132111PDZ domain
121222111Class II Aldolase and Adducin N-terminal domain
11Influenza non-structural protein (NS1)
833112523Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
643235427Fes/CIP4, and EFC/F-BAR homology domain
1854663345IQ calmodulin-binding motif
322222215Phosphoinositide 3-kinase family, accessory domain (PIK domain)
523223118Phospholipase D Active site motif
23112247Regulator of G protein signaling domain
1476665448GTPase-activator protein for Ras-like GTPase
25312538965RasGEF domain
1239423538RasGEF N-terminal motif
271210101216996RhoGAP domain
27121311111131116RhoGEF domain
2452557553SPRY domain
543433325RNA polymerase Rpb1, domain 2
31111119Guanylate kinase
823234325Gelsolin repeat
2210109915782UBA/TS-N domain
24171915141211112PHD-finger
41311111GGL domain
11767712858HECT-domain (ubiquitin-transferase)
221211110Helix-hairpin-helix motif
222222113MSP (Major sperm protein) domain
422122215Ribonuclease III domain
222222517Region in Clathrin and VPS
332233319RanBP1 domain
322222114PPIC-type PPIASE domain
323441320Zn-finger in Ran binding protein and others
3615141717149122Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1315B-box zinc finger
24118Poly(ADP-ribose) polymerase catalytic domain
1113Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
551362211712510303F-box domain
122117Elongation factor 1 gamma, conserved domain
111111713Calpain family cysteine protease
31111119Copper fist DNA binding domain
139161098469CRAL/TRIO domain
925221627BTB/POZ domain
66Ricin-type beta-trefoil lectin domain
111115Inhibitor of Apoptosis domain
533332322Voltage gated chloride channel
524128426Caspase domain
9889112855GDSL-like Lipase/Acylhydrolase
312111110Poly-adenylate binding protein, unique domain
1121117POLO box duplicated region
34182231155222194ABC transporter transmembrane region
11Integrase core domain
14441554349FAD binding domain
201311127Condensation domain
21111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
712211115HAMP domain
622222117ribosomal L5P family C-terminus
111448810661Insulinase (Peptidase family M16)
1654653443Dehydrogenase E1 component
11111117Lumazine binding domain
976778650Elongation factor G C-terminus
744445432HMGL-like
744445432DnaJ central domain
11Sulfotransferase domain
542542325Ribosomal protein L1p/L10e family
2381011118778Cation transporting ATPase, C-terminus
468231311138122Cation transporter/ATPase, N-terminus
2112431124dUTPase
845442431Aconitase C-terminal domain
1033333429Amino acid kinase family
12111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
68223232165Acyl transferase domain
7121112Urease beta subunit
11Dihydrodipicolinate synthetase family
87293845402611276haloacid dehalogenase-like hydrolase
3313203425148147Glycosyl hydrolases family 18
31111119Proliferating cell nuclear antigen, N-terminal domain
112Translation initiation factor IF-3, C-terminal domain
11Acylphosphatase
21111118Adenylosuccinate synthetase
21111118Asparaginase, N-terminal
44533322Peptidase S24-like
422222115Inorganic pyrophosphatase
33Subtilisin inhibitor-like
19514568764Glycosyl hydrolases family 16
321831321Glycosyl hydrolases family 15
11217645247NADH:flavin oxidoreductase / NADH oxidase family
3214332183-hydroxyacyl-CoA dehydrogenase, C-terminal domain
23461081658Glycosyl hydrolase family 20, catalytic domain
633423324HhH-GPD superfamily base excision DNA repair protein
11121118AIR carboxylase
45615GMC oxidoreductase
922332223Asparagine synthase
1366668651Septin
111216EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
211116Flavin-binding monooxygenase-like
353333323tRNA synthetases class I (E and Q), catalytic domain
211113110tRNA synthetases class I (R)
734443530XPG N-terminal domain
2897977673Metallo-beta-lactamase superfamily
1113F5/8 type C domain
955554538Choline/Carnitine o-acyltransferase
11114Putative esterase
729Glycosyl hydrolase family 9
21111219Ferrochelatase
222224216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
411111110Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
643344327RNB domain
1023322628CNH domain
12323213Diacylglycerol kinase catalytic domain
1432333533Dual specificity phosphatase, catalytic domain
311112110MyTH4 domain
2746426352P21-Rho-binding domain
4291212101011106PX domain
1024232427Ras association (RalGDS/AF-6) domain
637464434UBX domain
533334223VHS domain
11111117Phosphoinositide 3-kinase C2
321222214DAHP synthetase I family
937545437Carbon-nitrogen hydrolase
27413N-acetyltransferase
312112212Prephenate dehydratase
1153542333Syntaxin
1045443333Pumilio-family RNA binding repeat
1365666648Histone-like transcription factor (CBF/NF-Y) and archaeal histone
421222215Pterin binding enzyme
313111111ER lumen protein retaining receptor
222222214tRNA N6-adenosine threonylcarbamoyltransferase
11111117Histidinol dehydrogenase
32223315impB/mucB/samB family
22Phosphoenolpyruvate carboxykinase C-terminal P-loop domain
11Ribonuclease P
32222213
31111119Ribosomal L15
611111314Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
21111219Ribosomal prokaryotic L21 protein
12111118Ribosomal L28 family
611111112Ribosomal L29 protein
611111112Ribosomal L39 protein
611111112Ribosomal S17
21111118Ribulose-phosphate 3 epimerase family
111115Translationally controlled tumour protein
721223219RNA pseudouridylate synthase
1064653337Histone deacetylase domain
33Glycosyltransferase family 10 (fucosyltransferase) C-term
3817555162POT family
31211412PWWP domain
161213111581085SET domain
171112123Isochorismatase family
17153127Permease family
51121