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PFAM Domains • Xylaria cf. castorea CBS 124033 v1.0
Annotations/GenomesAntav1Bisnum1DalEC12_1Entma1HypEC38_3Xylcas124033_1Xylhyp1TotalAnnotation Description
PFAMs
10,48610,3948,53210,2119,14911,36911,45971,600
1127 transmembrane receptor (rhodopsin family)
112267 transmembrane receptor (Secretin family)
88545350586262427ATPase family associated with various cellular activities (AAA)
49384338474045300ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
14151415141615103Elongation factor Tu GTP binding domain
138101110111174Helix-loop-helix DNA-binding domain
222122112Hsp20/alpha crystallin family
8107117141572Hsp70 protein
878797753KH domain
1113SH2 domain
27122612251411127SH3 domain
9101099101067Actin
172256616893532435Ankyrin repeat
213121111PAN domain
788788753ADP-ribosylation factor family
22221722162221142Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
11Double-stranded RNA binding motif
172193182263EF hand
11134Fe-4S binding domain
212121110Fibronectin type III domain
222232215Globin
2081515191311101Glutathione S-transferase, C-terminal domain
21111129Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
858587546Homeodomain
322222215lactate/malate dehydrogenase, NAD binding domain
444454429Myosin head (motor domain)
2381221181291601551941,116Cytochrome P450
1811151131331251641741,005Protein kinase domain
19131714141618111Pyridine nucleotide-disulphide oxidoreductase
28282527262730191Ras family
1311131012151488Response regulator receiver domain
1252645741RNase H
60515957605249388RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
232323318Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
17252018212521147Subtilase family
59785953696859445Sugar (and other) transporter
1312111213121285Thioredoxin
4215113Trypsin
564454533Tubulin/FtsZ family, GTPase domain
514414von Willebrand factor type A domain
91236325702729328Zinc finger, C2H2 type
5474374585169Zinc finger, C3HC4 type (RING finger)
10311163337Zinc knuckle
222222214Protein-tyrosine phosphatase
2001151471171701591611,069short chain dehydrogenase
99536352717375486Zinc-binding dehydrogenase
665656640Thiolase, N-terminal domain
69342833374157299Beta-ketoacyl synthase, N-terminal domain
7485754402Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
119811881065Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
11ATP synthase A chain
444353326Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
15211819182020131E1-E2 ATPase
1288888860Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
674444534Alpha amylase, catalytic domain
222222214Phorbol esters/diacylglycerol binding domain (C1 domain)
777877851Bacterial transferase hexapeptide (six repeats)
453635531tRNA synthetases class I (I, L, M and V)
1076868853Cyclin, N-terminal domain
27181914181722135Carboxylesterase family
444544429DNA polymerase family B
645455534ATP synthase subunit C
555668641Peroxidase
187101513131894Beta-lactamase
443334425C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
28232624252427177Calcineurin-like phosphoesterase
10151217121817101Cellulase (glycosyl hydrolase family 5)
878787752tRNA synthetases class II (D, K and N)
38373837393839266Mitochondrial carrier protein
11114recA bacterial DNA recombination protein
19181621151821128Aminotransferase class I and II
868574442Phosphoribosyl transferase domain
1010101010101070Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11215Ribosome inactivating protein
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
1111116Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
131112101281076C2 domain
188198189989PH domain
1117101510171797bZIP transcription factor
20201822182023141Aldehyde dehydrogenase family
2321561701501962101901,304Fungal Zn(2)-Cys(6) binuclear cluster domain
25242323242425168Cytochrome b5-like Heme/Steroid binding domain
424333322Oxidoreductase molybdopterin binding domain
17121814181617112Oxidoreductase NAD-binding domain
33272626312931203SNF2 family N-terminal domain
222212213Ribosomal protein S7p/S5e
23212122212122151Ubiquitin-conjugating enzyme
786767748Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
546153327Chitin recognition protein
223233318Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
444344326Cupin
223131113Annexin
11111117Eukaryotic-type carbonic anhydrase
211212211Chalcone and stilbene synthases, N-terminal domain
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
547384536Catalase
11111117Disintegrin
14213314UDP-glucoronosyl and UDP-glucosyl transferase
9117688756Aminotransferase class-III
232232216Ribosomal protein S19
11111117DNA gyrase B
744455433Thiamine pyrophosphate enzyme, central domain
453334325Lyase
222322215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1113Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
21222110Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1212121112111383Kinesin motor domain
31362628303230213DnaJ domain
1413141414141497Proteasome subunit
23422114Major intrinsic protein
11111117ATP synthase
111122210Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
121212211Ribosomal protein L22p/L17e
232222215Ribosomal protein L14p/L23e
11109101011970Ubiquitin family
555555535Cofilin/tropomyosin-type actin-binding protein
23232331814-3-3 protein
525252223Alkaline phosphatase
655656639Zinc carboxypeptidase
39323427364033241Aldo/keto reductase family
157127177671Myb-like DNA-binding domain
844444331Forkhead domain
2211118Glycosyl hydrolases family 32 N-terminal domain
121212211Ribosomal protein L16p/L10e
322222215Ribosomal protein S14p/S29e
433333322FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
3227
857678748Flavodoxin
11111117Calreticulin family
1491298141480Common central domain of tyrosinase
119111210121176Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
41454544424447308DEAD/DEAH box helicase
93757870807580551Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211118Ribosomal protein L5
776767848Pyridoxal-dependent decarboxylase conserved domain
853436635Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
867667646Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
1011111112101176Pyridoxal-phosphate dependent enzyme
24181917201716131NUDIX domain
766868849pfkB family carbohydrate kinase
763738741Glycosyl hydrolases family 28
3227Luciferase-like monooxygenase
222222214Ribosomal protein L3
222122213Ribosomal protein L11, RNA binding domain
18191617181716121Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
4414316Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
554555534Calponin homology (CH) domain
524363225Glutamine amidotransferases class-II
221222213Ribosomal protein S15
21111118Thaumatin family
222222214Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
221222213Ribosomal protein S2
312222214SRF-type transcription factor (DNA-binding and dimerisation domain)
666766643GATA zinc finger
34163312371215159Amino acid permease
665657742Prolyl oligopeptidase family
222122213Ribosomal protein L30p/L7e
6710695548Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
645444532Aconitase family (aconitate hydratase)
323232217Glycosyl hydrolase family 10
424141218Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11125Tetraspanin family
121212211Ribosomal protein S10p/S20e
333423321Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
1033534432Polyprenyl synthetase
445354530Hexokinase
11158129151787Dynamin family
31111119Transcription factor TFIID (or TATA-binding protein, TBP)
776766544Rieske [2Fe-2S] domain
1111116Phytochrome region
314Proton-conducting membrane transporter
989889758Biotin-requiring enzyme
11111117Phosphofructokinase
122221111Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333333220FGGY family of carbohydrate kinases, N-terminal domain
16881110151280Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
8987910960Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
1269576651Chromo (CHRromatin Organisation MOdifier) domain
444444428Phosphatidylinositol-specific phospholipase C, Y domain
555656638Phosphatidylinositol-specific phospholipase C, X domain
8129679960D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
2221221126-phosphogluconate dehydrogenase, C-terminal domain
14148129151385Multicopper oxidase
1111109109969WW domain
121122211Ribosomal RNA adenine dimethylase
1113Yeast PIR protein repeat
122106103106108109108762WD domain, G-beta repeat
454464431Heavy-metal-associated domain
573635635Adenylate kinase
222222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
121223314Ribosomal protein S8
222222214Ribosomal protein S11
444444428LIM domain
112Matrixin
242644527Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
322422318chorismate binding enzyme
33333332160s Acidic ribosomal protein
444444529Prenyltransferase and squalene oxidase repeat
646565537Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
988988858Bromodomain
1296119111371Acyl-CoA dehydrogenase, C-terminal domain
1413141314131394Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
422425524Ribonuclease T2 family
333333220HSF-type DNA-binding
222322316SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
1079889758Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
121212211Transketolase, thiamine diphosphate binding domain
1023324529Glycosyl hydrolases family 11
433434425Inositol monophosphatase family
444444428Glutaredoxin
525242222Isocitrate lyase family
222222214Serine hydroxymethyltransferase
224143319Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
424444325KOW motif
111115Ribosomal protein L34
11114Ribosomal protein L33
333333321RF-1 domain
223242217Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
766666744Protein phosphatase 2C
222222214Nucleotidyl transferase
633336428Carbonic anhydrase
111212210Phosphoribulokinase / Uridine kinase family
785556743Fatty acid desaturase
666666642MutS domain V
11121219Delta-aminolevulinic acid dehydratase
544344428Arginase family
666667643MCM P-loop domain
232323318Squalene/phytoene synthase
91010101010968FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
79474351476359389AMP-binding enzyme
533444427G-protein alpha subunit
19881088970HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1071089121066His Kinase A (phospho-acceptor) domain
333333321Armadillo/beta-catenin-like repeat
32112613261312133Tetratricopeptide repeat
334242321Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
10796116655BRCA1 C Terminus (BRCT) domain
656363433Glycosyl transferases group 1
423242219Glycosyl transferase family 2
131111210SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
751716431Pectate lyase
433234322ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
60372042315866314Phosphopantetheine attachment site
333423321Formyl transferase
9109119111271Metallopeptidase family M24
133153162254Leucine Rich Repeat
57103811511415196alpha/beta hydrolase fold
333334322RNA polymerase Rpb2, domain 6
444434427PB1 domain
222222214Staphylococcal nuclease homologue
9129129121275Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
443533325Zinc finger, ZZ type
222122213HRDC domain
968696650CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
445454430S1 RNA binding domain
11111117HIUase/Transthyretin family
535364329AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
121116UvrD/REP helicase N-terminal domain
587959851Rhodanese-like domain
222222214Universal stress protein family
56284128403433260Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
878888956tRNA synthetase class II core domain (G, H, P, S and T)
11111117SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1113PDZ domain
543435630Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555555535Fes/CIP4, and EFC/F-BAR homology domain
524252222IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
535362226Phospholipase D Active site motif
151414420Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
443444427RasGEF domain
443444427RasGEF N-terminal motif
1099998963RhoGAP domain
666666642RhoGEF domain
333334322SPRY domain
333333321RNA polymerase Rpb1, domain 2
322322317Guanylate kinase
544344428Gelsolin repeat
646464535UBA/TS-N domain
1781715171514103PHD-finger
11111117GGL domain
666666642HECT-domain (ubiquitin-transferase)
212121110Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
534354428Ribonuclease III domain
242324421Region in Clathrin and VPS
322333319RanBP1 domain
222222214PPIC-type PPIASE domain
334232219Zn-finger in Ran binding protein and others
18101781810889Zinc finger C-x8-C-x5-C-x3-H type (and similar)
423233320Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
591266966717236F-box domain
11111117Elongation factor 1 gamma, conserved domain
434444528Calpain family cysteine protease
112221211Copper fist DNA binding domain
865857746CRAL/TRIO domain
1093125111060BTB/POZ domain
222131213Ricin-type beta-trefoil lectin domain
11111128Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
835265433Caspase domain
1871571591283GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
29192220232023156ABC transporter transmembrane region
677577948FAD binding domain
3410913111814109Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
555656638Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
566665640Elongation factor G C-terminus
546545433HMGL-like
444444428DnaJ central domain
11Sulfotransferase domain
322333420Starch binding domain
233323319Ribosomal protein L1p/L10e family
798779855Cation transporting ATPase, C-terminus
9101191010968Cation transporter/ATPase, N-terminus
11121118dUTPase
645444633Aconitase C-terminal domain
444444428Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
66322833394060298Acyl transferase domain
11111117Urease beta subunit
685657643Dihydrodipicolinate synthetase family
35173515381615171haloacid dehalogenase-like hydrolase
866978953Glycosyl hydrolases family 2
24131616171620122Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
112116Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
312121212Adenylosuccinate synthetase
121122110Asparaginase, N-terminal
313233318Peptidase S24-like
11111117Inorganic pyrophosphatase
14191315131516105Glycosyl hydrolases family 16
322323318Glycosyl hydrolases family 15
1079687855NADH:flavin oxidoreductase / NADH oxidase family
111112183-hydroxyacyl-CoA dehydrogenase, C-terminal domain
333323320Glycosyl hydrolase family 20, catalytic domain
564667741HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
34302828342935218GMC oxidoreductase
332222216Asparagine synthase
2266127171787Fungal cellulose binding domain
565656639Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
383244125Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
533334425tRNA synthetases class I (E and Q), catalytic domain
311121110tRNA synthetases class I (R)
444344427XPG N-terminal domain
12676105652Metallo-beta-lactamase superfamily
1111116F5/8 type C domain
432325423Choline/Carnitine o-acyltransferase
212222112Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111211411Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
8117778856Dioxygenase
333333321CNH domain
222222214Diacylglycerol kinase catalytic domain
877777750Dual specificity phosphatase, catalytic domain
322232216P21-Rho-binding domain
1312131311131388PX domain
323232217Ras association (RalGDS/AF-6) domain
545454431UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
222222315DAHP synthetase I family
912119119970Carbon-nitrogen hydrolase
2111128N-acetyltransferase
11111117Prephenate dehydratase
444444428Syntaxin
545454431Pumilio-family RNA binding repeat
676776746Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
322223216tRNA N6-adenosine threonylcarbamoyltransferase
11212119Histidinol dehydrogenase
444444428impB/mucB/samB family
1113
11111117Ribosomal L15
131414418Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
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