PFAM Domains • Dekkera bruxellensis CBS 2499 v2.0
Annotations/GenomesCanar1Canca1Cante1Dekbr2Hanpo2Lipst1_1Nadfu1Picme2Picst3Sacce1Spapa3Wican1TotalAnnotation Description
PFAMs
5,1224,4745,0504,9105,0066,3675,3244,8884,5715,5355,2595,80762,313
333034323235373228333333392ATPase family associated with various cellular activities (AAA)
282524242256263031313136364ABC transporter
44444444444448ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
141213141414141414161414167Elongation factor Tu GTP binding domain
1078108981077810102Helix-loop-helix DNA-binding domain
1212442218Hsp20/alpha crystallin family
9799971091214910114Hsp70 protein
85778998888893KH domain
111111111110SH2 domain
181619171721211822221921231SH3 domain
1089101010119891011115Actin
151013151216151314181616173Ankyrin repeat
67666775777677ADP-ribosylation factor family
9485586897141295Eukaryotic aspartyl protease
34343444433342Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
11121121121115Cytochrome c
31112322123526Double-stranded RNA binding motif
11149111415151013111111145EF hand
11131111111134Fe-4S binding domain
1121128Fibronectin type III domain
2131222228227Globin
52666748266866Glutathione S-transferase, C-terminal domain
11221121431221Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
32335664385452Homeodomain
32333223333333lactate/malate dehydrogenase, NAD binding domain
2323552353134Myosin head (motor domain)
65114521451039588Cytochrome P450
101798994978698969511493971,139Protein kinase domain
7575101097895991Pyridine nucleotide-disulphide oxidoreductase
211920182223241923242021254Ras family
64635795648972Response regulator receiver domain
413211111116RNase H
524040535262584647484659603RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
123Reverse transcriptase (RNA-dependent DNA polymerase)
31322112313224Copper/zinc superoxide dismutase (SODC)
11111111212215Iron/manganese superoxide dismutases, alpha-hairpin domain
464445544412561Subtilase family
3010392832103141460342539428Sugar (and other) transporter
87898897910810101Thioredoxin
1112111210Trypsin
35333543343342Tubulin/FtsZ family, GTPase domain
11von Willebrand factor type A domain
413038333441413349383339450Zinc finger, C2H2 type
263028282634313024223337349Zinc finger, C3HC4 type (RING finger)
83282933567460Zinc knuckle
22422222234330Protein-tyrosine phosphatase
172042152580201731133340353short chain dehydrogenase
162317161940151624171829250Zinc-binding dehydrogenase
33222532424537Thiolase, N-terminal domain
22222522222227Beta-ketoacyl synthase, N-terminal domain
333333333233352Fe-2S iron-sulfur cluster binding domain
11111111151217Enolase, C-terminal TIM barrel domain
33Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
77777888798790Glutamine amidotransferase class-I
109109109101010101011118TCP-1/cpn60 chaperonin family
12111121111114Glutamine synthetase, catalytic domain
11111311111114Triosephosphate isomerase
9810981711911121013127E1-E2 ATPase
105111097131011101110117Core histone H2A/H2B/H3/H4
113621941683458Alpha amylase, catalytic domain
12111213111116Phorbol esters/diacylglycerol binding domain (C1 domain)
54556665548766Bacterial transferase hexapeptide (six repeats)
34324343733342tRNA synthetases class I (I, L, M and V)
106101010710711131211117Cyclin, N-terminal domain
111732419Carboxylesterase family
44444444444448DNA polymerase family B
33333433333337ATP synthase subunit C
21122222212120Peroxidase
131121110Beta-lactamase
11NADH dehydrogenase
211519202129182018211821241Calcineurin-like phosphoesterase
21511331443331Cellulase (glycosyl hydrolase family 5)
66666665666671tRNA synthetases class II (D, K and N)
323333313135383034343335399Mitochondrial carrier protein
131115121111111010111314142Aminotransferase class I and II
8688881088118899Phosphoribosyl transferase domain
84610891268881198Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111111111112Phosphoglycerate kinase
21222232232225Ribosomal protein S4/S9 N-terminal domain
22222232232226Ribosomal protein S12/S23
12216Bacterial regulatory helix-turn-helix proteins, AraC family
21112121111115Chaperonin 10 Kd subunit
9610711896911911106C2 domain
131413121314151215241218175PH domain
63636785585466bZIP transcription factor
101010101111910109915124Aldehyde dehydrogenase family
7043866273125398085535993868Fungal Zn(2)-Cys(6) binuclear cluster domain
13121615141913121471313161Cytochrome b5-like Heme/Steroid binding domain
1214Oxidoreductase molybdopterin binding domain
77699878787992Oxidoreductase NAD-binding domain
181718191619181918171719215SNF2 family N-terminal domain
22232232222226Ribosomal protein S7p/S5e
141513141421151413141316176Ubiquitin-conjugating enzyme
65666666676672Isocitrate/isopropylmalate dehydrogenase
32322233333231Ribosomal Proteins L2, RNA binding domain
11111121121114Hsp90 protein
22222222222224Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111111111112Dihydrofolate reductase
1214Chitin recognition protein
2442232339337Cysteine-rich secretory protein family
11111111111112Ribosomal protein S3, C-terminal domain
11Cupin
112Annexin
112Trypsin and protease inhibitor
232222322222262-oxoacid dehydrogenases acyltransferase (catalytic domain)
12211621121222Catalase
112Disintegrin
112UDP-glucoronosyl and UDP-glucosyl transferase
103758489745878Aminotransferase class-III
22221232222224Ribosomal protein S19
11111111111112DNA gyrase B
65345544373453Thiamine pyrophosphate enzyme, central domain
43333333434339Lyase
22222222232225Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
12111121111114Adenylate and Guanylate cyclase catalytic domain
11111121111113ATP synthase delta (OSCP) subunit
11111111111112Orotidine 5'-phosphate decarboxylase / HUMPS family
11111111111112Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
11111121121114Pyruvate kinase, barrel domain
986486104666881Kinesin motor domain
242121232324252324212325277DnaJ domain
141414141314141414141414167Proteasome subunit
11111211141217Major intrinsic protein
11111111111112ATP synthase
111111111111123'5'-cyclic nucleotide phosphodiesterase
1111111111111Profilin
11212121121116Ribosomal protein L22p/L17e
21222222232224Ribosomal protein L14p/L23e
6877711117697894Ubiquitin family
32444424334542Cofilin/tropomyosin-type actin-binding protein
1211122112111614-3-3 protein
12222311211321Alkaline phosphatase
1111111111111Zinc carboxypeptidase
1561713164181717161824208Aldo/keto reductase family
131110141413141312151214155Myb-like DNA-binding domain
33332333344438Forkhead domain
181212Glycosyl hydrolases family 32 N-terminal domain
111111111110Ribosomal protein L16p/L10e
22222232132225Ribosomal protein S14p/S29e
33223333343335FKBP-type peptidyl-prolyl cis-trans isomerase
11211121232219Glutathione peroxidase
12111211121216
668771078876787Flavodoxin
11111121111113Calreticulin family
56555645334657Aminotransferase class-V
11111111121113Ribonucleotide reductase, small chain
333027323136363337563134416DEAD/DEAH box helicase
565349565970595856795959713Helicase conserved C-terminal domain
11111111111112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222222222224Ribosomal protein L23
11111111111112Pyridoxal-dependent decarboxylase, C-terminal sheet domain
21121122131219Ribosomal protein L5
33333633323338Pyridoxal-dependent decarboxylase conserved domain
12111331131220Citrate synthase, C-terminal domain
45543754465557GHMP kinases N terminal domain
57665656575669Biotin carboxylase, N-terminal domain
11111111111112Tryptophan synthase alpha chain
578568878781188Pyridoxal-phosphate dependent enzyme
798769107878793NUDIX domain
34434343244341pfkB family carbohydrate kinase
11Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
22222222222224Ribosomal protein L3
22222232232226Ribosomal protein L11, RNA binding domain
12101512121113128121512144Histidine phosphatase superfamily (branch 1)
11111111111112Thymidylate synthase
44444444444448ATP synthase alpha/beta chain, C terminal domain
54554454544352Calponin homology (CH) domain
45554664475459Glutamine amidotransferases class-II
22222222222224Ribosomal protein S15
11111111111112Fructose-1-6-bisphosphatase, N-terminal domain
21222112222221Ribonucleotide reductase, all-alpha domain
22222221232224Ribosomal protein S2
22322222241226SRF-type transcription factor (DNA-binding and dimerisation domain)
75888710791081097GATA zinc finger
27143025299233036242943319Amino acid permease
22222222222325Prolyl oligopeptidase family
32313143243231Ribosomal protein L30p/L7e
43344983365658Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444444544449Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
22343335234337Glycosyl hydrolases family 17
21222222222223Ribosomal protein S5, N-terminal domain
11111111111112Nucleoside diphosphate kinase
21122122121219Ribosomal protein S10p/S20e
5531263232436Arrestin (or S-antigen), N-terminal domain
11111111111112Phosphoglucose isomerase
1111111111111Carbohydrate phosphorylase
21221122222221SecY translocase
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
32243232232331Ribosomal protein L6
33333333333336Polyprenyl synthetase
43343243353340Hexokinase
33333343333337Dynamin family
11111111111112Transcription factor TFIID (or TATA-binding protein, TBP)
21224212211323Rieske [2Fe-2S] domain
33Proton-conducting membrane transporter
69777777686784Biotin-requiring enzyme
21222132222223Phosphofructokinase
22222232232226Ribosomal protein S17
11111111121113Hydroxymethylglutaryl-coenzyme A reductase
43344332332438FGGY family of carbohydrate kinases, N-terminal domain
37322442334441Enoyl-CoA hydratase/isomerase
22222232232226Ribosomal protein S9/S16
22222322233227Transcription factor TFIIB repeat
76666467666571Cytidine and deoxycytidylate deaminase zinc-binding region
111111111110Molybdopterin oxidoreductase
21222422122224Chromo (CHRromatin Organisation MOdifier) domain
11111111111112Phosphatidylinositol-specific phospholipase C, Y domain
11121111211114Phosphatidylinositol-specific phospholipase C, X domain
65645844446662D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
11111111111112Malic enzyme, N-terminal domain
111111111211136-phosphogluconate dehydrogenase, C-terminal domain
21332923232537Multicopper oxidase
535468105756670WW domain
12211221222220Ribosomal RNA adenine dimethylase
1012443101540Yeast PIR protein repeat
878485918610010486848889931,077WD domain, G-beta repeat
33443533534444Heavy-metal-associated domain
33334333333337Adenylate kinase
32223222232328Phosphoglucomutase/phosphomannomutase, C-terminal domain
32333123222228Ribosomal protein S8
11111121121114Ribosomal protein S11
33233333342234LIM domain
12111121111114Regulator of chromosome condensation (RCC1) repeat
22222142232226Ribosomal protein S13/S18
22222222222224chorismate binding enzyme
5354535555555560s Acidic ribosomal protein
44444444444347Prenyltransferase and squalene oxidase repeat
75766686486574Protein kinase C terminal domain
11111111111112Single-strand binding protein family
11111121121114S-adenosylmethionine synthetase, N-terminal domain
989997111091089108Bromodomain
7216532228Acyl-CoA dehydrogenase, C-terminal domain
151214151317131416161515175Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
11211111211114Ribonuclease T2 family
43444344452546HSF-type DNA-binding
22222222222224SRP54-type protein, GTPase domain
32523233433336Serine carboxypeptidase
78788877898893Phosphatidylinositol 3- and 4-kinase
31313321221224Transketolase, thiamine diphosphate binding domain
12111211131318Inositol monophosphatase family
52455475477459Glutaredoxin
12213221121220Isocitrate lyase family
22222122222223Serine hydroxymethyltransferase
111115Iron-containing alcohol dehydrogenase
22222232222225Ribosomal protein L10
14243472674448KOW motif
111111111110Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
3223222323428RF-1 domain
32635214613743Sodium:solute symporter family
1112111111112Imidazoleglycerol-phosphate dehydratase
11111111111112DNA polymerase family A
11111111151116IMP dehydrogenase / GMP reductase domain
11111121111113Glucose-6-phosphate dehydrogenase, NAD binding domain
11ROK family
66666586676674Protein phosphatase 2C
23223332223128Nucleotidyl transferase
11211211212217Carbonic anhydrase
11211121222218Phosphoribulokinase / Uridine kinase family
64656657616664Fatty acid desaturase
64454645464658MutS domain V
11111111111112Delta-aminolevulinic acid dehydratase
35355114313337Arginase family
66666666666773MCM P-loop domain
11111211111113Squalene/phytoene synthase
798779876148898FHA domain
7169671211610101012116AMP-binding enzyme
23222222222225G-protein alpha subunit
55556665574463HMG (high mobility group) box
32212573212535His Kinase A (phospho-acceptor) domain
22222332222226Armadillo/beta-catenin-like repeat
121310131620221514211716189Tetratricopeptide repeat
23122122322224Ion transport protein
11111111111112DNA gyrase/topoisomerase IV, subunit A
101189999991089110BRCA1 C Terminus (BRCT) domain
44444644444450Glycosyl transferases group 1
22222322222225Glycosyl transferase family 2
1111111119SAM domain (Sterile alpha motif)
1111111111111linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
23222332222227CoA-ligase
33333323323334Phosphopantetheine attachment site
22222222222224Formyl transferase
79868887668889Metallopeptidase family M24
12111610111216929113111179Leucine Rich Repeat
171318161820111419152023204alpha/beta hydrolase fold
33333343333337RNA polymerase Rpb2, domain 6
23222221211323PB1 domain
22222222212223Staphylococcal nuclease homologue
6766710107887991Rab-GTPase-TBC domain
111111111110Tudor domain
1111111111111WH1 domain
22222412222225Zinc finger, ZZ type
11111111121113HRDC domain
7986791177108998CBS domain
21222222232224Ribosomal protein L13
22112231131221Ribosomal protein L4/L1 family
1113Clp protease
34233443244339S1 RNA binding domain
111111111110HIUase/Transthyretin family
44444554644452AhpC/TSA family
44444444444448tRNA synthetases class I (W and Y)
1123122232322UvrD/REP helicase N-terminal domain
55355453494557Rhodanese-like domain
223122211319Universal stress protein family
11111391025181113131611161Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
11111112111113C-terminal regulatory domain of Threonine dehydratase
24222222222226AIR synthase related protein, N-terminal domain
88888888898998tRNA synthetase class II core domain (G, H, P, S and T)
21221122222221SpoU rRNA Methylase family
22