PFAM Domains • Piedraia hortae v1.1
Annotations/GenomesAltbr1CocheC5_3Dotse1Hyspu1Mycgr3Pieho1_1Sepmu1TotalAnnotation Description
PFAMs
5,9039,2958,1109,0166,4205,4907,52751,761
117 transmembrane receptor (rhodopsin family)
32414562423641299ATPase family associated with various cellular activities (AAA)
37423247432532258ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
1314141314161498Elongation factor Tu GTP binding domain
111314101081379Helix-loop-helix DNA-binding domain
132323216Hsp20/alpha crystallin family
687777749Hsp70 protein
888998959KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
21222123232223155SH3 domain
9101010710965Actin
358837100411631348Ankyrin repeat
4862141136PAN domain
777677748ADP-ribosylation factor family
822101219171199Eukaryotic aspartyl protease
244444426Cyclic nucleotide-binding domain
22Cytochrome b(C-terminal)/b6/petD
22Cytochrome b/b6/petB
11111117Cytochrome c
211121311Double-stranded RNA binding motif
18181718201919129EF hand
211211194Fe-4S binding domain
243232420Fibronectin type III domain
111115Globin
10921171641491Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
5861034541Homeodomain
442222319lactate/malate dehydrogenase, NAD binding domain
655555435Myosin head (motor domain)
6315678158732074622Cytochrome P450
8411510514711395118777Protein kinase domain
917162215913101Pyridine nucleotide-disulphide oxidoreductase
22262427242323169Ras family
21272518221022145Response regulator receiver domain
2104532228RNase H
49586561575659405RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
314Reverse transcriptase (RNA-dependent DNA polymerase)
123221213Copper/zinc superoxide dismutase (SODC)
222221213Iron/manganese superoxide dismutases, alpha-hairpin domain
71241192651Subtilase family
74705578931951440Sugar (and other) transporter
101312121081075Thioredoxin
522111113Trypsin
444443326Tubulin/FtsZ family, GTPase domain
154412320von Willebrand factor type A domain
56686154624046387Zinc finger, C2H2 type
35545273393548336Zinc finger, C3HC4 type (RING finger)
161238510357Zinc knuckle
222222214Protein-tyrosine phosphatase
981321331721243698793short chain dehydrogenase
52696075681449387Zinc-binding dehydrogenase
976675646Thiolase, N-terminal domain
1028102914413108Beta-ketoacyl synthase, N-terminal domain
4646436332Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11121118Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
7810888857Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
332422218Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
1319101313101290E1-E2 ATPase
511776102874Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
661191361263Alpha amylase, catalytic domain
213222214Phorbol esters/diacylglycerol binding domain (C1 domain)
687597951Bacterial transferase hexapeptide (six repeats)
734463532tRNA synthetases class I (I, L, M and V)
596679648Cyclin, N-terminal domain
2429172817216133Carboxylesterase family
444444428DNA polymerase family B
344454428ATP synthase subunit C
11Legume lectin domain
784543334Peroxidase
87101910660Beta-lactamase
223212315C-5 cytosine-specific DNA methylase
23282731271920175Calcineurin-like phosphoesterase
10981644556Cellulase (glycosyl hydrolase family 5)
7771077752tRNA synthetases class II (D, K and N)
36413837403638266Mitochondrial carrier protein
11recA bacterial DNA recombination protein
717151513121594Aminotransferase class I and II
6898971057Phosphoribosyl transferase domain
1113121112111282Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
221212111Ribosomal protein S4/S9 N-terminal domain
222122213Ribosomal protein S12/S23
2114Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
1112141113111385C2 domain
16221817171817125PH domain
699884852bZIP transcription factor
2027222018915131Aldehyde dehydrogenase family
791921529110437123778Fungal Zn(2)-Cys(6) binuclear cluster domain
18242620241723152Cytochrome b5-like Heme/Steroid binding domain
34735527Oxidoreductase molybdopterin binding domain
91819121281492Oxidoreductase NAD-binding domain
21252327262222166SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
21222625242123162Ubiquitin-conjugating enzyme
778695850Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
122222213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
910241127Chitin recognition protein
313344523Cysteine-rich secretory protein family
21111118Ribosomal protein S3, C-terminal domain
34376326Cupin
122221212Annexin
111227Eukaryotic-type carbonic anhydrase
11114Chalcone and stilbene synthases, N-terminal domain
2433333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
446631428Catalase
11111117Disintegrin
6109795854Aminotransferase class-III
122223214Ribosomal protein S19
11111117DNA gyrase B
468945541Thiamine pyrophosphate enzyme, central domain
444453327Lyase
122222213Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1113Sodium:neurotransmitter symporter family
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111218Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
11114Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1011101311101075Kinesin motor domain
30292638282528204DnaJ domain
1214141414141496Proteasome subunit
7711510949Major intrinsic protein
11111117ATP synthase
2323212Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1211117Profilin
21111118Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
101116161091082Ubiquitin family
254424425Cofilin/tropomyosin-type actin-binding protein
32222221514-3-3 protein
563532428Alkaline phosphatase
1083331331Zinc carboxypeptidase
22252835221121164Aldo/keto reductase family
1115151712101696Myb-like DNA-binding domain
245564430Forkhead domain
232142317Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
13212211Ribosomal protein S14p/S29e
554443429FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
112322213
698786650Flavodoxin
112Protamine P1
1111116Calreticulin family
812813731162Common central domain of tyrosinase
389945947Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
44393938463740283DEAD/DEAH box helicase
65777376726373499Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222221213Ribosomal protein L23
1112117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
222122213Ribosomal protein L5
665775541Pyridoxal-dependent decarboxylase conserved domain
233232217Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
777664744Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
81410111181173Pyridoxal-phosphate dependent enzyme
1116141815101397NUDIX domain
554455634pfkB family carbohydrate kinase
65472529Glycosyl hydrolases family 28
111227Luciferase-like monooxygenase
322222215Ribosomal protein L3
122212212Ribosomal protein L11, RNA binding domain
101515151181488Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
111115Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
555455534Calponin homology (CH) domain
676446437Glutamine amidotransferases class-II
132222214Ribosomal protein S15
11111117Thaumatin family
221211110Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
232222215Ribosomal protein S2
222232316SRF-type transcription factor (DNA-binding and dimerisation domain)
577385843GATA zinc finger
22393554331838239Amino acid permease
283322525Prolyl oligopeptidase family
231211111Ribosomal protein L30p/L7e
612101175960Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
445454430Aconitase family (aconitate hydratase)
5513216Glycosyl hydrolase family 10
126514625Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
112Tetraspanin family
21112119Ribosomal protein S10p/S20e
34242217Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222221213Ribosomal protein L6
583353431Polyprenyl synthetase
544532326Hexokinase
475766641Dynamin family
111127114Transcription factor TFIID (or TATA-binding protein, TBP)
457452532Rieske [2Fe-2S] domain
11Phytochrome region
77Proton-conducting membrane transporter
6119887958Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
334343424FGGY family of carbohydrate kinases, N-terminal domain
1113Sodium:dicarboxylate symporter family
81222111651387Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222224216Transcription factor TFIIB repeat
567885847Cytidine and deoxycytidylate deaminase zinc-binding region
21111118Molybdopterin oxidoreductase
455622529Chromo (CHRromatin Organisation MOdifier) domain
233232318Phosphatidylinositol-specific phospholipase C, Y domain
335254527Phosphatidylinositol-specific phospholipase C, X domain
9910963854D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
122221212Malic enzyme, N-terminal domain
1222211116-phosphogluconate dehydrogenase, C-terminal domain
512132089875Multicopper oxidase
91181096861WW domain
11111117Ribosomal RNA adenine dimethylase
12631518Yeast PIR protein repeat
97127106107104142102785WD domain, G-beta repeat
643433427Heavy-metal-associated domain
444323323Adenylate kinase
322222114Phosphoglucomutase/phosphomannomutase, C-terminal domain
222112111Ribosomal protein S8
11121219Ribosomal protein S11
344344527LIM domain
112Matrixin
11112219Regulator of chromosome condensation (RCC1) repeat
322122214Ribosomal protein S13/S18
22NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222222214chorismate binding enzyme
44443332560s Acidic ribosomal protein
444444428Prenyltransferase and squalene oxidase repeat
567645740Protein kinase C terminal domain
1111116Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
678867749Bromodomain
141516151551191Acyl-CoA dehydrogenase, C-terminal domain
15141515151317104Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
23222213Ribonuclease T2 family
243333321HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
91314161381184Serine carboxypeptidase
788887854Phosphatidylinositol 3- and 4-kinase
222321214Transketolase, thiamine diphosphate binding domain
45241117Glycosyl hydrolases family 11
554441427Inositol monophosphatase family
144425424Glutaredoxin
233522320Isocitrate lyase family
222222214Serine hydroxymethyltransferase
363542225Iron-containing alcohol dehydrogenase
122222213Ribosomal protein L10
533363225KOW motif
111115Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
123222315RF-1 domain
13472320Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
686664541Protein phosphatase 2C
232322216Nucleotidyl transferase
123521216Carbonic anhydrase
2112118Phosphoribulokinase / Uridine kinase family
11Transcriptional regulatory protein, C terminal
674565639Fatty acid desaturase
666666642MutS domain V
11111117Delta-aminolevulinic acid dehydratase
454542428Arginase family
676666643MCM P-loop domain
223222215Squalene/phytoene synthase
788657849FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
34576449511748320AMP-binding enzyme
343444325G-protein alpha subunit
7771077752HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1622221618618118His Kinase A (phospho-acceptor) domain
132332216Armadillo/beta-catenin-like repeat
23312131232223174Tetratricopeptide repeat
11Retroviral envelope protein
223342319Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
101110111010870BRCA1 C Terminus (BRCT) domain
3671045742Glycosyl transferases group 1
455444733Glycosyl transferase family 2
631141117SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
12111118Ribosomal protein L7/L12 C-terminal domain
75112218Pectate lyase
1212118ribonuclease
111115Urease, gamma subunit
354444428CoA-ligase
829182515722124Phosphopantetheine attachment site
335342424Formyl transferase
5991188858Metallopeptidase family M24
13181217161514105Leucine Rich Repeat
22424653231533234alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
333335323PB1 domain
222123214Staphylococcal nuclease homologue
1212111111121180Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
335332322Zinc finger, ZZ type
331211112HRDC domain
8810109111167CBS domain
222221213Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
243334423S1 RNA binding domain
11114HIUase/Transthyretin family
665563435AhpC/TSA family
444453428tRNA synthetases class I (W and Y)
11121118UvrD/REP helicase N-terminal domain
446556535Rhodanese-like domain
122122212Universal stress protein family
21453152242030223Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
232222215AIR synthase related protein, N-terminal domain
897777752tRNA synthetase class II core domain (G, H, P, S and T)
222222214SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
11212119PDZ domain
587752539Class II Aldolase and Adducin N-terminal domain
443423323Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555545534Fes/CIP4, and EFC/F-BAR homology domain
665644435IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
565544534Phospholipase D Active site motif
11111117Regulator of G protein signaling domain
233332319GTPase-activator protein for Ras-like GTPase
344444427RasGEF domain
244424424RasGEF N-terminal motif
798869855RhoGAP domain
666746641RhoGEF domain
224423219SPRY domain
333333321RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
333343423Gelsolin repeat
88129681162UBA/TS-N domain
17172416131520122PHD-finger
111115GGL domain
456547637HECT-domain (ubiquitin-transferase)
22232213Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
3105445536Ribonuclease III domain
121212211Region in Clathrin and VPS
222211212RanBP1 domain
222222214PPIC-type PPIASE domain
11211219Zn-finger in Ran binding protein and others
18171720131117113Zinc finger C-x8-C-x5-C-x3-H type (and similar)
123111211Poly(ADP-ribose) polymerase catalytic domain
211116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
506956114772643435F-box domain
11111117Elongation factor 1 gamma, conserved domain
231321113Calpain family cysteine protease
212211211Copper fist DNA binding domain
555544533CRAL/TRIO domain
2191732471192BTB/POZ domain
11215Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
334443425Voltage gated chloride channel
132211212Caspase domain
11981335655GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
11114POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
1920162419915122ABC transporter transmembrane region
112Integrase core domain
497655541FAD binding domain
51189821154Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
222222214ribosomal L5P family C-terminus
556556436Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
466657640Elongation factor G C-terminus
447464635HMGL-like
244344425DnaJ central domain
224144421Starch binding domain
232222316Ribosomal protein L1p/L10e family
8105686750Cation transporting ATPase, C-terminus
9115886754Cation transporter/ATPase, N-terminus
1222119dUTPase
344454428Aconitase C-terminal domain
123433319Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
92683213412104Acyl transferase domain
1111116Urease beta subunit
573631227Dihydrodipicolinate synthetase family
29382632302130206haloacid dehalogenase-like hydrolase
784471334Glycosyl hydrolases family 2
7169992557Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
1111116Acylphosphatase
11111117Adenylosuccinate synthetase
3112119Asparaginase, N-terminal
113322315Peptidase S24-like
11111117Inorganic pyrophosphatase
109810871062Glycosyl hydrolases family 16
222311314Glycosyl hydrolases family 15
7597101645NADH:flavin oxidoreductase / NADH oxidase family
2332412173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
341511217Glycosyl hydrolase family 20, catalytic domain
344443325HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
1929222918118136GMC oxidoreductase
243213217Asparagine synthase
911110132Fungal cellulose binding domain
565655537Septin
21111118EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
13116Flavin-binding monooxygenase-like
133433320tRNA synthetases class I (E and Q), catalytic domain
221311111tRNA synthetases class I (R)
444334426XPG N-terminal domain
8131713841578Metallo-beta-lactamase superfamily
111115F5/8 type C domain
122222213Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
12111118Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333323320RNB domain
574632835Dioxygenase
233323218CNH domain
112212211Diacylglycerol kinase catalytic domain
4891065850Dual specificity phosphatase, catalytic domain
6511
232312215P21-Rho-binding domain
1113111211131283PX domain
232223216Ras association (RalGDS/AF-6) domain
575645537UBX domain
444344427VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
813111396969Carbon-nitrogen hydrolase
11322211N-acetyltransferase
11111117Prephenate dehydratase
554532428Syntaxin
11Pentapeptide repeats (8 copies)
355554532Pumilio-family RNA binding repeat
576756541Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
222222214Glycoprotease family
12111118Histidinol dehydrogenase
344454428impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
1111116Ribosomal L39 protein
12111118Ribosomal S17
12111118Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
5614117Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
583551431POT family
11111117PWWP domain
8171624101913107SET domain
612101691063Isochorismatase family
35143420Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
556354533XPG I-region
11111117Acetokinase family
11AcrB/AcrD/AcrF family
434241422DNA photolyase
11NlpC/P60 family
112Cation-independent mannose-6-phosphate receptor repeat
11Nitroreductase family
226545327Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
122211211Acyl CoA binding protein