PFAM Domains • Fusarium oxysporum v1.0
Please note that this organism is for archival use only. Please see the current Fusarium oxysporum f. sp. lycopersici 4287 v2 site for the latest data and information.
Annotations/GenomesAspni5Aspnid1Fusgr1Fusox1Mycfi2Mycgr3Necha2Neucr1Stano2Verda1TotalAnnotation Description
PFAMs
7,8769,0749,47311,7378,2796,42010,1427,1858,2918,09386,570
11137 transmembrane receptor (rhodopsin family)
38424850494253424841453ATPase family associated with various cellular activities (AAA)
62496275404376354347532ABC transporter
454434444440ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
14131414141414151514141Elongation factor Tu GTP binding domain
9131661131012151213174Helix-loop-helix DNA-binding domain
3531422333240Hsp20/alpha crystallin family
7889777871078Hsp70 protein
789899899985KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
111111111110SH2 domain
24232219212323212121218SH3 domain
7101011107710101092Actin
7659981434141131496874780Ankyrin repeat
20175141714179PAN domain
777877887874ADP-ribosylation factor family
11101619131918171215150Eukaryotic aspartyl protease
545744444344Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
1111111119Cytochrome c
3222221115Double-stranded RNA binding motif
21181616182021181716181EF hand
2122111322174Fe-4S binding domain
332233333328Fibronectin type III domain
22241221218Globin
121217211816186115136Glutathione S-transferase, C-terminal domain
22111111111Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
67121243126101183Homeodomain
4431332344343lactate/malate dehydrogenase, NAD binding domain
2114Low-density lipoprotein receptor repeat class B
455555555549Myosin head (motor domain)
132114107150917314241117651,032Cytochrome P450
1221041041431061131491031151131,172Protein kinase domain
15191730191524121515181Pyridine nucleotide-disulphide oxidoreductase
22232725242425252324242Ras family
13191823202215142216182Response regulator receiver domain
310165362642RNase H
63655959625758665554598RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
204125Reverse transcriptase (RNA-dependent DNA polymerase)
322312323223Copper/zinc superoxide dismutase (SODC)
222222221320Iron/manganese superoxide dismutases, alpha-hairpin domain
432625892961018138Subtilase family
15210610619391932473881931,200Sugar (and other) transporter
1191617101014111311122Thioredoxin
124221314323Trypsin
475534754549Tubulin/FtsZ family, GTPase domain
1261141353339von Willebrand factor type A domain
656263744762124524752648Zinc finger, C2H2 type
31393743513938384740403Zinc finger, C3HC4 type (RING finger)
1989656125667Zinc knuckle
322222222221Protein-tyrosine phosphatase
141141136222138124259581211021,442short chain dehydrogenase
11873691296068155296156818Zinc-binding dehydrogenase
775967856767Thiolase, N-terminal domain
5037181710141592211203Beta-ketoacyl synthase, N-terminal domain
5596646664572Fe-2S iron-sulfur cluster binding domain
111111231113Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
989108812108890Glutamine amidotransferase class-I
9101010101091091097TCP-1/cpn60 chaperonin family
434532453538Glutamine synthetase, catalytic domain
221122222218Triosephosphate isomerase
17182331111328131618188E1-E2 ATPase
778866886872Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
1512711131381067102Alpha amylase, catalytic domain
123222222220Phorbol esters/diacylglycerol binding domain (C1 domain)
1010101110999815101Bacterial transferase hexapeptide (six repeats)
733346735344tRNA synthetases class I (I, L, M and V)
107610671256877Cyclin, N-terminal domain
4224284822174593119285Carboxylesterase family
444444444440DNA polymerase family B
466555544549ATP synthase subunit C
3361034446750Peroxidase
10817191110356117134Beta-lactamase
222221222320C-5 cytosine-specific DNA methylase
29283034262731272427283Calcineurin-like phosphoesterase
712121274145131197Cellulase (glycosyl hydrolase family 5)
777977778773tRNA synthetases class II (D, K and N)
39384243384047374139404Mitochondrial carrier protein
112recA bacterial DNA recombination protein
22222128151325131419192Aminotransferase class I and II
8888891289785Phosphoribosyl transferase domain
12111010121210111010108Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111110Phosphoglycerate kinase
122221222218Ribosomal protein S4/S9 N-terminal domain
222222232221Ribosomal protein S12/S23
21111118Bacterial regulatory helix-turn-helix proteins, AraC family
111111111110Chaperonin 10 Kd subunit
10111523131316121014137C2 domain
15201816171717182014172PH domain
910122788117614112bZIP transcription factor
29283155201865141922301Aldehyde dehydrogenase family
24230524928212110447899811672,128Fungal Zn(2)-Cys(6) binuclear cluster domain
29282527242435212324260Cytochrome b5-like Heme/Steroid binding domain
533635535442Oxidoreductase molybdopterin binding domain
25172532141225151418197Oxidoreductase NAD-binding domain
25242627242633252623259SNF2 family N-terminal domain
222222222220Ribosomal protein S7p/S5e
21211920252420202320213Ubiquitin-conjugating enzyme
9881099957781Isocitrate/isopropylmalate dehydrogenase
222122222219Ribosomal Proteins L2, RNA binding domain
111111111110Hsp90 protein
122222222219Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
47581226347Chitin recognition protein
225644434438Cysteine-rich secretory protein family
111111111110Ribosomal protein S3, C-terminal domain
335746615646Cupin
232322322324Annexin
1342212217Eukaryotic-type carbonic anhydrase
111121119Chalcone and stilbene synthases, N-terminal domain
66Bacterial regulatory proteins, luxR family
4344334333342-oxoacid dehydrogenases acyltransferase (catalytic domain)
946733834552Catalase
122111311114Disintegrin
113111210UDP-glucoronosyl and UDP-glucosyl transferase
8816186919799109Aminotransferase class-III
212222221218Ribosomal protein S19
111111111110DNA gyrase B
867181041055679Thiamine pyrophosphate enzyme, central domain
543845534546Lyase
222222222220Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1361132421Sodium:neurotransmitter symporter family
213Ferritin-like domain
111111111110Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
211111111111Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
3212112214Aromatic amino acid lyase
111111121111Pyruvate kinase, barrel domain
11111111111111101311111Kinesin motor domain
27272628282828282826274DnaJ domain
13151414141414151413140Proteasome subunit
55581110517360Major intrinsic protein
111111111110ATP synthase
333642512332Glycosyl hydrolase family 1
1111111111103'5'-cyclic nucleotide phosphodiesterase
111111121111Profilin
111111111110Ribosomal protein L22p/L17e
222222222220Ribosomal protein L14p/L23e
711121317101112109112Ubiquitin family
445742364544Cofilin/tropomyosin-type actin-binding protein
22222222222014-3-3 protein
244543556543Alkaline phosphatase
1289237281557Zinc carboxypeptidase
37403141332254182433333Aldo/keto reductase family
14171218171212171214145Myb-like DNA-binding domain
444546434442Forkhead domain
4351454625351Glycosyl hydrolases family 32 N-terminal domain
111111111110Ribosomal protein L16p/L10e
122231123219Ribosomal protein S14p/S29e
453344345338FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
112222221217
117812981366686Flavodoxin
112Protamine P1
111111111110Calreticulin family
5914111175810686Common central domain of tyrosinase
36111084586768Aminotransferase class-V
111111111110Ribonucleotide reductase, small chain
45393840424656403839423DEAD/DEAH box helicase
72707278757287757670747Helicase conserved C-terminal domain
111111111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222222220Ribosomal protein L23
111422111115Pyridoxal-dependent decarboxylase, C-terminal sheet domain
112222222117Ribosomal protein L5
861110671067677Pyridoxal-dependent decarboxylase conserved domain
433323342229Citrate synthase, C-terminal domain
555555564550GHMP kinases N terminal domain
786776956667Biotin carboxylase, N-terminal domain
311111111112Tryptophan synthase alpha chain
14141518111123111213142Pyridoxal-phosphate dependent enzyme
16141720141518171314158NUDIX domain
468675466658pfkB family carbohydrate kinase
2211612529241184Glycosyl hydrolases family 28
1211211110Luciferase-like monooxygenase
222222222220Ribosomal protein L3
122221222218Ribosomal protein L11, RNA binding domain
891218161113101415126Histidine phosphatase superfamily (branch 1)
111111111110Thymidylate synthase
1211218Lipoxygenase
453444443439ATP synthase alpha/beta chain, C terminal domain
555555553548Calponin homology (CH) domain
555444443543Glutamine amidotransferases class-II
222222222220Ribosomal protein S15
112'Cold-shock' DNA-binding domain
111111118Thaumatin family
112211221215Fructose-1-6-bisphosphatase, N-terminal domain
111111111110Ribonucleotide reductase, all-alpha domain
222122222219Ribosomal protein S2
422443222732SRF-type transcription factor (DNA-binding and dimerisation domain)
677898865670GATA zinc finger
62525382483387203331501Amino acid permease
166532627341Prolyl oligopeptidase family
22211122215Ribosomal protein L30p/L7e
11911141078612896Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
865665844456Aconitase family (aconitate hydratase)
235512348437Glycosyl hydrolase family 10
245461243637Glycosyl hydrolases family 17
222122222219Ribosomal protein S5, N-terminal domain
111111111110Nucleoside diphosphate kinase
221112212216Ribosomal protein S10p/S20e
363322545538Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
111111111110Carbohydrate phosphorylase
111111111110SecY translocase
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222122222219Ribosomal protein L6
1185345333348Polyprenyl synthetase
656433455546Hexokinase
977856975669Dynamin family
111112111111Transcription factor TFIID (or TATA-binding protein, TBP)
99511551446573Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
1113Phytochrome region
8991088976882Biotin-requiring enzyme
111111111110Phosphofructokinase
112222221217Ribosomal protein S17
421611111119Hydroxymethylglutaryl-coenzyme A reductase
344344433436FGGY family of carbohydrate kinases, N-terminal domain
11Hemocyanin, copper containing domain
111111129Sodium:dicarboxylate symporter family
915172220162371112152Enoyl-CoA hydratase/isomerase
222222222220Ribosomal protein S9/S16
222222232221Transcription factor TFIIB repeat
578888875872Cytidine and deoxycytidylate deaminase zinc-binding region
121211111213Molybdopterin oxidoreductase
11972052496679Chromo (CHRromatin Organisation MOdifier) domain
2261233743446Phosphatidylinositol-specific phospholipase C, Y domain
3271455953659Phosphatidylinositol-specific phospholipase C, X domain
811121686146109100D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222112222218Malic enzyme, N-terminal domain
111113PEP-utilising enzyme, mobile domain
2213221221186-phosphogluconate dehydrogenase, C-terminal domain
15814181481210106115Multicopper oxidase
11Granulin
8101099911911995WW domain
111111111110Ribosomal RNA adenine dimethylase
11511110Yeast PIR protein repeat
1161121151231011041261031001031,103WD domain, G-beta repeat
446833854550Heavy-metal-associated domain
333332443331Adenylate kinase
322122212219Phosphoglucomutase/phosphomannomutase, C-terminal domain
212111222115Ribosomal protein S8
111111211111Ribosomal protein S11
444544544341LIM domain
1113Matrixin
232412222121Regulator of chromosome condensation (RCC1) repeat
122222222219Ribosomal protein S13/S18
11
522322232326chorismate binding enzyme
33433334433360s Acidic ribosomal protein
664544544547Prenyltransferase and squalene oxidase repeat
366664467654Protein kinase C terminal domain
11111121110Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
667986878772Bromodomain
1015111914151481410130Acyl-CoA dehydrogenase, C-terminal domain
15141414171515141714149Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
223322212221Ribonuclease T2 family
433533332332HSF-type DNA-binding
222222222220SRP54-type protein, GTPase domain
12211111111Urease alpha-subunit, N-terminal domain
1259131613174118108Serine carboxypeptidase
867688888875Phosphatidylinositol 3- and 4-kinase
342422512227Transketolase, thiamine diphosphate binding domain
32331327529Glycosyl hydrolases family 11
535544555445Inositol monophosphatase family
345442344437Glutaredoxin
253642433133Isocitrate lyase family
223322322223Serine hydroxymethyltransferase
533534614236Iron-containing alcohol dehydrogenase
222212232220Ribosomal protein L10
732236644340KOW motif
111115Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
223332232123RF-1 domain
442422622331Sodium:solute symporter family
211111111111Imidazoleglycerol-phosphate dehydratase
111111111110DNA polymerase family A
121111111111IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
766666757561Protein phosphatase 2C
222332222222Nucleotidyl transferase
334722433334Carbonic anhydrase
211112111112Phosphoribulokinase / Uridine kinase family
867756857766Fatty acid desaturase
545666666656MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
644744545346Arginase family
666666666660MCM P-loop domain
312222222220Squalene/phytoene synthase
112Bacterial extracellular solute-binding proteins, family 5 Middle
688785988875FHA domain
74676275555150274839548AMP-binding enzyme
433434434335G-protein alpha subunit
6799676126977HMG (high mobility group) box
10141520141811111713143His Kinase A (phospho-acceptor) domain
432223333227Armadillo/beta-catenin-like repeat
30322730252325232318256Tetratricopeptide repeat
222234332528Ion transport protein
111111111110DNA gyrase/topoisomerase IV, subunit A
81013128101091212104BRCA1 C Terminus (BRCT) domain
9861074796773Glycosyl transferases group 1
846674943657Glycosyl transferase family 2
312214414224SAM domain (Sterile alpha motif)
111111121111linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
769102212131466Pectate lyase
222311121217ribonuclease
12211111111Urease, gamma subunit
346744444343CoA-ligase
4438272121151982315231Phosphopantetheine attachment site
335334333434Formyl transferase
10129111081189795Metallopeptidase family M24
14111414161614141314140Leucine Rich Repeat
24305372412341234233382alpha/beta hydrolase fold
333333333330RNA polymerase Rpb2, domain 6
333443444436PB1 domain
222222222220Staphylococcal nuclease homologue
11119911111010910101Rab-GTPase-TBC domain
111111111110Tudor domain
111111111110WH1 domain
244523636338Zinc finger, ZZ type
111111112212HRDC domain
810101299899791CBS domain
222222222220Ribosomal protein L13
222222222220Ribosomal protein L4/L1 family
111111111110Clp protease
345443353438S1 RNA binding domain
111111111110HIUase/Transthyretin family
633336526239AhpC/TSA family
445655444445tRNA synthetases class I (W and Y)
12121111111UvrD/REP helicase N-terminal domain
5671155644457Rhodanese-like domain
222222221219Universal stress protein family
29354971402461273629401Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
111111121111C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
978967988980tRNA synthetase class II core domain (G, H, P, S and T)
111122112113SpoU rRNA Methylase family
11Phage integrase family
222222222321Tetrapyrrole (Corrin/Porphyrin) Methylases
111111111110Glycosyl transferase family, a/b domain
22112221114PDZ domain
5535651226251Class II Aldolase and Adducin N-terminal domain
3451142444445Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
444454344541Fes/CIP4, and EFC/F-BAR homology domain
656354455548IQ calmodulin-binding motif
222222222220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
564454567652Phospholipase D Active site motif
212811211120Regulator of G protein signaling domain
334433443334GTPase-activator protein for Ras-like GTPase
554444444341RasGEF domain
354432244334RasGEF N-terminal motif
7788769108777RhoGAP domain
556564566654RhoGEF domain
224432334330SPRY domain
323233333328RNA polymerase Rpb1, domain 2
214311321321Guanylate kinase
455444442541Gelsolin repeat
69881066971079UBA/TS-N domain
17171414171316171513153PHD-finger
11111117GGL domain
666664665657HECT-domain (ubiquitin-transferase)
22122222116Helix-hairpin-helix motif
111111111110MSP (Major sperm protein) domain
643464348345Ribonuclease III domain
123231132321Region in Clathrin and VPS
233221232222RanBP1 domain
221222222219PPIC-type PPIASE domain
123211231319Zn-finger in Ran binding protein and others
9141616151319111313139Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1224211122