PFAM Domains • Gloeophyllum trabeum v1.0
Annotations/GenomesCopci1Glotr1_1Phchr1Pospl1Pucgr1Schco1SerlaS7_3_2Serla_S7_9Ustma1TotalAnnotation Description
PFAMs
7,6787,9065,9273,2606,7846,9177,3986,9365,65858,464
117 transmembrane receptor (rhodopsin family)
435038133538423930328ATPase family associated with various cellular activities (AAA)
463550172545383838332ABC transporter
4445444433ATP synthase alpha/beta family, nucleotide-binding domain
11114EGF-like domain
15141561715141313122Elongation factor Tu GTP binding domain
1011118711881286Helix-loop-helix DNA-binding domain
71464854149Hsp20/alpha crystallin family
8979788763Hsp70 protein
88838887866KH domain
11111117SH2 domain
312522142827241522208SH3 domain
11TNFR/NGFR cysteine-rich region
121269910101078Actin
932922221629372915292Ankyrin repeat
87618766857ADP-ribosylation factor family
13315317162828249219Eukaryotic aspartyl protease
33313333325Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
11121122112Cytochrome c
67311977243Double-stranded RNA binding motif
19182492125151517163EF hand
21221212134Fe-4S binding domain
111111118Fibronectin type III domain
112Globin
14181498621214115Glutathione S-transferase, C-terminal domain
3111111110Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
10107681079673Homeodomain
2114Laminin EGF domain
2222222216lactate/malate dehydrogenase, NAD binding domain
5655566442Myosin head (motor domain)
134119113651610615515219879Cytochrome P450
13614812079112147143133881,106Protein kinase domain
1718165812171613122Pyridine nucleotide-disulphide oxidoreductase
32262852527222224211Ras family
89915913991192Response regulator receiver domain
214419631655RNase H
646859228568604956531RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
2727Retroviral aspartyl protease
11112226Reverse transcriptase (RNA-dependent DNA polymerase)
111151120Copper/zinc superoxide dismutase (SODC)
22311222217Iron/manganese superoxide dismutases, alpha-hairpin domain
123414211441Subtilase family
20424791666353521291Sugar (and other) transporter
991018111091077Thioredoxin
55525555441Tubulin/FtsZ family, GTPase domain
3241222117von Willebrand factor type A domain
60485217652125362828605Zinc finger, C2H2 type
4851261511052414035418Zinc finger, C3HC4 type (RING finger)
2130711461426018617711844Zinc knuckle
22222231218Protein-tyrosine phosphatase
4994755529104737042591short chain dehydrogenase
295857311145393923332Zinc-binding dehydrogenase
44634544640Thiolase, N-terminal domain
2132223119549Beta-ketoacyl synthase, N-terminal domain
33323334242Fe-2S iron-sulfur cluster binding domain
112111119Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
8777788658Glutamine amidotransferase class-I
10119112910101082TCP-1/cpn60 chaperonin family
11ATP synthase A chain
43423333227Glutamine synthetase, catalytic domain
111111129Triosephosphate isomerase
111111710911111394E1-E2 ATPase
1614163242116187135Core histone H2A/H2B/H3/H4
112Copper binding proteins, plastocyanin/azurin family
888341266358Alpha amylase, catalytic domain
66535343439Phorbol esters/diacylglycerol binding domain (C1 domain)
5448332433Bacterial transferase hexapeptide (six repeats)
33615633333tRNA synthetases class I (I, L, M and V)
1214145101812168109Cyclin, N-terminal domain
191792062327289158Carboxylesterase family
4446444434DNA polymerase family B
33333333125ATP synthase subunit C
411712211332Peroxidase
2536344330Beta-lactamase
4453244329C-5 cytosine-specific DNA methylase
312419141721242421195Calcineurin-like phosphoesterase
1111812941414588Cellulase (glycosyl hydrolase family 5)
57614665646tRNA synthetases class II (D, K and N)
36373483433373636291Mitochondrial carrier protein
16181351511141413119Aminotransferase class I and II
6658555747Phosphoribosyl transferase domain
1413147141411119107Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111119Phosphoglycerate kinase
22222222218Ribosomal protein S4/S9 N-terminal domain
22223211217Ribosomal protein S12/S23
111111118Chaperonin 10 Kd subunit
1714161071414129113C2 domain
19171841816161416138PH domain
66855777455bZIP transcription factor
12131931216151616122Aldehyde dehydrogenase family
425535282479403183417Fungal Zn(2)-Cys(6) binuclear cluster domain
242823111922252518195Cytochrome b5-like Heme/Steroid binding domain
2541144223Oxidoreductase molybdopterin binding domain
101013261088774Oxidoreductase NAD-binding domain
262512105821222217213SNF2 family N-terminal domain
22222222218Ribosomal protein S7p/S5e
23222051721161816158Ubiquitin-conjugating enzyme
56512555741Isocitrate/isopropylmalate dehydrogenase
22212222116Ribosomal Proteins L2, RNA binding domain
223122113Hsp90 protein
2222222115Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
22117522224Cysteine-rich secretory protein family
11222111112Ribosomal protein S3, C-terminal domain
149252225Cupin
314Annexin
33Chalcone and stilbene synthases, N-terminal domain
332133333242-oxoacid dehydrogenases acyltransferase (catalytic domain)
4457624436Catalase
1112117Disintegrin
11UDP-glucoronosyl and UDP-glucosyl transferase
565211554548Aminotransferase class-III
2223222217Ribosomal protein S19
111211119DNA gyrase B
4431333223Thiamine pyrophosphate enzyme, central domain
33313333325Lyase
2221211213Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111111119Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
2211111110Indole-3-glycerol phosphate synthase
2112233216Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
81010913109101089Kinesin motor domain
323022133227292726238DnaJ domain
14141451514141414118Proteasome subunit
268110223640Major intrinsic protein
111111118ATP synthase
252233320Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
11231122215Ribosomal protein L22p/L17e
22222222218Ribosomal protein L14p/L23e
1714125913151311109Ubiquitin family
55423455336Cofilin/tropomyosin-type actin-binding protein
212211211214-3-3 protein
22233416Alkaline phosphatase
11121118Zinc carboxypeptidase
226253361256444413342Aldo/keto reductase family
131313471112111296Myb-like DNA-binding domain
55532853541Forkhead domain
12126Glycosyl hydrolases family 32 N-terminal domain
11121111110Ribosomal protein L16p/L10e
2212122113Ribosomal protein S14p/S29e
33343532329FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
22221211215
671335755455Flavodoxin
11Tropomyosin
11111117Calreticulin family
19243129Common central domain of tyrosinase
7736387748Aminotransferase class-V
2241311115Ribonucleotide reductase, small chain
515044156969454240425DEAD/DEAH box helicase
9286593115891907867752Helicase conserved C-terminal domain
2114Fructose-bisphosphate aldolase class-I
11311119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22231222117Ribosomal protein L23
111111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11121111110Ribosomal protein L5
5532755537Pyridoxal-dependent decarboxylase conserved domain
53322333125Citrate synthase, C-terminal domain
45416455539GHMP kinases N terminal domain
6665566545Biotin carboxylase, N-terminal domain
111211119Tryptophan synthase alpha chain
7910488991074Pyridoxal-phosphate dependent enzyme
17151181013151512116NUDIX domain
4525534432pfkB family carbohydrate kinase
310371377142Glycosyl hydrolases family 28
22222222218Ribosomal protein L3
22231222117Ribosomal protein L11, RNA binding domain
7762138661065Histidine phosphatase superfamily (branch 1)
1111111119Thymidylate synthase
44415444434ATP synthase alpha/beta chain, C terminal domain
44415455537Calponin homology (CH) domain
4547466541Glutamine amidotransferases class-II
22122222217Ribosomal protein S15
33'Cold-shock' DNA-binding domain
583766540Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
22223222320Ribosomal protein S2
13222421219SRF-type transcription factor (DNA-binding and dimerisation domain)
1110747121081079GATA zinc finger
13251692019242216164Amino acid permease
11Bacterial regulatory proteins, crp family
562242910343Prolyl oligopeptidase family
11121111211Ribosomal protein L30p/L7e
51284561112972Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4444444432Aconitase family (aconitate hydratase)
63645511233Glycosyl hydrolase family 10
3111211212Glycosyl hydrolases family 17
22232211217Ribosomal protein S5, N-terminal domain
2221211314Nucleoside diphosphate kinase
31112210Tetraspanin family
22Galactoside-binding lectin
22231211115Ribosomal protein S10p/S20e
323123216Arrestin (or S-antigen), N-terminal domain
211111119Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111111119SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22223222219Ribosomal protein L6
45334655338Polyprenyl synthetase
2224222218Hexokinase
46516998250Dynamin family
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
4533243428Rieske [2Fe-2S] domain
11Phytochrome region
11Proton-conducting membrane transporter
98817988967Biotin-requiring enzyme
111111118Phosphofructokinase
22222221217Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
33323333225FGGY family of carbohydrate kinases, N-terminal domain
788389881170Enoyl-CoA hydratase/isomerase
22122222217Ribosomal protein S9/S16
3223222218Transcription factor TFIIB repeat
56545565748Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
77618451153156Chromo (CHRromatin Organisation MOdifier) domain
3211322115Phosphatidylinositol-specific phospholipase C, Y domain
3212522118Phosphatidylinositol-specific phospholipase C, X domain
66641666647D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2232333119Malic enzyme, N-terminal domain
12212111116-phosphogluconate dehydrogenase, C-terminal domain
1755612666669Multicopper oxidase
129646886867WW domain
23111222115Ribosomal RNA adenine dimethylase
124123116581061271281261001,008WD domain, G-beta repeat
23442433126Heavy-metal-associated domain
3334333325Adenylate kinase
2122222114Phosphoglucomutase/phosphomannomutase, C-terminal domain
21252111217Ribosomal protein S8
22122121215Ribosomal protein S11
56556444544LIM domain
33311322220Regulator of chromosome condensation (RCC1) repeat
22222211216Ribosomal protein S13/S18
2224222218chorismate binding enzyme
3333231232360s Acidic ribosomal protein
44419444438Prenyltransferase and squalene oxidase repeat
76418667449Protein kinase C terminal domain
11111117Single-strand binding protein family
111211119S-adenosylmethionine synthetase, N-terminal domain
1110106811991084Bromodomain
910951010991182Acyl-CoA dehydrogenase, C-terminal domain
15141481415141313120Ubiquitin carboxyl-terminal hydrolase
1113Ribosomal protein L36
321122213Ribonuclease T2 family
35426432433HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
11122211112Urease alpha-subunit, N-terminal domain
51621212101212696Serine carboxypeptidase
8878877659Phosphatidylinositol 3- and 4-kinase
22211322116Transketolase, thiamine diphosphate binding domain
61119Glycosyl hydrolases family 11
121116WHEP-TRS domain
22212521219Inositol monophosphatase family
4434444431Glutaredoxin
3422233322Isocitrate lyase family
111211119Serine hydroxymethyltransferase
2431422220Iron-containing alcohol dehydrogenase
12322222319Ribosomal protein L10
45663742340KOW motif
11111117Ribosomal protein L34
11Ribosomal protein L33
32221333221RF-1 domain
1431133420Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
121111119DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111121119Glucose-6-phosphate dehydrogenase, NAD binding domain
86546111010565Protein phosphatase 2C
1313132115Nucleotidyl transferase
7342244127Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
813658131111479Fatty acid desaturase
66695667657MutS domain V
11121111110Delta-aminolevulinic acid dehydratase
2531433223Arginase family
66637666652MCM P-loop domain
1112111210Squalene/phytoene synthase
89844887561FHA domain
30333081225434429254AMP-binding enzyme
161491841514144108G-protein alpha subunit
26141520113014158153HMG (high mobility group) box
112Haemagglutinin
466941054654His Kinase A (phospho-acceptor) domain
2422423322Armadillo/beta-catenin-like repeat
292923172725323423239Tetratricopeptide repeat
33122222320Ion transport protein
2112111110DNA gyrase/topoisomerase IV, subunit A
1013666997470BRCA1 C Terminus (BRCT) domain
67416466545Glycosyl transferases group 1
43623545335Glycosyl transferase family 2
313411SAM domain (Sterile alpha motif)
442332119linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
12418Pectate lyase
1111223112ribonuclease
11122211112Urease, gamma subunit
33314333528CoA-ligase
614641119221193Phosphopantetheine attachment site
22132222420Formyl transferase
910947101010675Metallopeptidase family M24
15201451516121315125Leucine Rich Repeat
343323102024343622236alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
56314533232PB1 domain
2222222216Staphylococcal nuclease homologue
99761089866Rab-GTPase-TBC domain
111111118Tudor domain
13222121115WH1 domain
4544333228Zinc finger, ZZ type
1111116HRDC domain
1110817799769CBS domain
22222222218Ribosomal protein L13
22222222218Ribosomal protein L4/L1 family
1111111119Clp protease
65235333434S1 RNA binding domain
111115HIUase/Transthyretin family
4462544332AhpC/TSA family
4444444432tRNA synthetases class I (W and Y)
111111129UvrD/REP helicase N-terminal domain
4464455335Rhodanese-like domain
22131222318Universal stress protein family
283424151126262718209Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
1111111119C-terminal regulatory domain of Threonine dehydratase
22222222218AIR synthase related protein, N-terminal domain
76618666955tRNA synthetase class II core domain (G, H, P, S and T)
113117Phage integrase family
22211222216Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
222211212Class II Aldolase and Adducin N-terminal domain
22Adenoviral fibre protein (repeat/shaft region)
23213433122Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5527554336Fes/CIP4, and EFC/F-BAR homology domain
4342432325IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
34414344330Phospholipase D Active site motif
111111118Regulator of G protein signaling domain
44415444434GTPase-activator protein for Ras-like GTPase
109614566552RasGEF domain
99114377546RasGEF N-terminal motif
12131181312111010100RhoGAP domain
14148514101091094RhoGEF domain
44433444232SPRY domain
3333332323RNA polymerase Rpb1, domain 2
111111118Guanylate kinase
4443355331Gelsolin repeat
1110728786766UBA/TS-N domain
181611101215191515131PHD-finger
21115GGL domain
5547654541HECT-domain (ubiquitin-transferase)
21421411218Helix-hairpin-helix motif
11BRCA2 repeat
3111211111MSP (Major sperm protein) domain
66236576243Ribonuclease III domain
2221221214Region in Clathrin and VPS
33313322323RanBP1 domain
22222222117PPIC-type PPIASE domain
431311215Zn-finger in Ran binding protein and others
2223189924161315149Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111115B-box zinc finger
53112181545Poly(ADP-ribose) polymerase catalytic domain
21111121111Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
1979010013026290444317937F-box domain
111111118Elongation factor 1 gamma, conserved domain
93111116Calpain family cysteine protease
2235132220Copper fist DNA binding domain
75629555852CRAL/TRIO domain
19187212619174113BTB/POZ domain
1724131152256Ricin-type beta-trefoil lectin domain
111211119Inhibitor of Apoptosis domain
3324322221Voltage gated chloride channel
156271955151Caspase domain
10663365544GDSL-like Lipase/Acylhydrolase
11112118Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
23162071123171718152ABC transporter transmembrane region
6131651656Integrase core domain
34823333332FAD binding domain
2237910437Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
21122111112HAMP domain
22121112113ribosomal L5P family C-terminus
5564566542Insulinase (Peptidase family M16)
4443434329Dehydrogenase E1 component
1111111119Lumazine binding domain
76736766553Elongation factor G C-terminus
44425444435HMGL-like
4453444432DnaJ central domain
322212214Starch binding domain
22231311217Ribosomal protein L1p/L10e family
64414455740Cation transporting ATPase, C-terminus
86438566854Cation transporter/ATPase, N-terminus
1167111173dUTPase
4444444432Aconitase C-terminal domain
43314333327Amino acid kinase family
2211111110N-(5'phosphoribosyl)anthranilate (PRA) isomerase
39142488544Acyl transferase domain
11122211112Urease beta subunit
224222115Dihydrodipicolinate synthetase family
24292582328303025222haloacid dehalogenase-like hydrolase
1213532118Glycosyl hydrolases family 2
991014171488291Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
1113Acylphosphatase
111111118Adenylosuccinate synthetase
1111111119Asparaginase, N-terminal
13223233221Peptidase S24-like
1111111119Inorganic pyrophosphatase
65371522940Glycosyl hydrolases family 16
42223322121Glycosyl hydrolases family 15
620593201110286NADH:flavin oxidoreductase / NADH oxidase family
111121112113-hydroxyacyl-CoA dehydrogenase, C-terminal domain
24342322224Glycosyl hydrolase family 20, catalytic domain
46454564543HhH-GPD superfamily base excision DNA repair protein
1111111119AIR carboxylase
3422311792114149171GMC oxidoreductase
2212133216Asparagine synthase
4412848893Fungal cellulose binding domain
7651