PFAM Domains • Lineolata rhizophorae ATCC 16933 v1.0
Annotations/GenomesAurpu_var_pul1Disac1Linrh1Mycfi2Mycgr3Myrdu1Polci1Zymar1TotalAnnotation Description
PFAMs
8,5677,0698,4588,2796,4207,7947,8107,86762,264
117 transmembrane receptor (Secretin family)
4341494942403843345ATPase family associated with various cellular activities (AAA)
4938354043384635324ABC transporter
4443444431ATP synthase alpha/beta family, nucleotide-binding domain
1414151414141414113Elongation factor Tu GTP binding domain
1310101310891083Helix-loop-helix DNA-binding domain
3222222318Hsp20/alpha crystallin family
77117778761Hsp70 protein
9989998970KH domain
11111117SH2 domain
2021122123212220160SH3 domain
1010101071091076Actin
467894141396547366Ankyrin repeat
72514821452PAN domain
7777777655ADP-ribosylation factor family
146101319171122112Eukaryotic aspartyl protease
4444444432Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
111111118Cytochrome c
2412212216Double-stranded RNA binding motif
191831820181817131EF hand
111112294Fe-4S binding domain
2213321317Fibronectin type III domain
111115Globin
181271816181120120Glutathione S-transferase, C-terminal domain
2111112110Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
6554385541Homeodomain
4323232221lactate/malate dehydrogenase, NAD binding domain
11Lectin C-type domain
4445545536Myosin head (motor domain)
5873589173555566529Cytochrome P450
109117171106113105104139964Protein kinase domain
1413141915161712120Pyridine nucleotide-disulphide oxidoreductase
2321272424232324189Ras family
4620102022252123187Response regulator receiver domain
2155312524RNase H
6258576257605757470RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
231222113Copper/zinc superoxide dismutase (SODC)
2212222215Iron/manganese superoxide dismutases, alpha-hairpin domain
657899989151Subtilase family
9423499193685862538Sugar (and other) transporter
9131110109101082Thioredoxin
122131212Trypsin
3443433428Tubulin/FtsZ family, GTPase domain
5114143322von Willebrand factor type A domain
6455174762485441388Zinc finger, C2H2 type
444185139404050313Zinc finger, C3HC4 type (RING finger)
5446544840Zinc knuckle
4222222218Protein-tyrosine phosphatase
1189174138124105120123893short chain dehydrogenase
6437306068525052413Zinc-binding dehydrogenase
5466755543Thiolase, N-terminal domain
8123101413111081Beta-ketoacyl synthase, N-terminal domain
54364455362Fe-2S iron-sulfur cluster binding domain
2211111110Enolase, C-terminal TIM barrel domain
8888888864Glutamine amidotransferase class-I
101010101010101080TCP-1/cpn60 chaperonin family
11ATP synthase A chain
3433234224Glutamine synthetase, catalytic domain
2112222113Triosephosphate isomerase
121117111312111299E1-E2 ATPase
10786698660Core histone H2A/H2B/H3/H4
146613135121281Alpha amylase, catalytic domain
1322222418Phorbol esters/diacylglycerol binding domain (C1 domain)
99410988865Bacterial transferase hexapeptide (six repeats)
3354634432tRNA synthetases class I (I, L, M and V)
7786777655Cyclin, N-terminal domain
301682217251317148Carboxylesterase family
4444444432DNA polymerase family B
4435544534ATP synthase subunit C
6333443430Peroxidase
8761110691067Beta-lactamase
3332144323C-5 cytosine-specific DNA methylase
2733232627252624211Calcineurin-like phosphoesterase
1851074114665Cellulase (glycosyl hydrolase family 5)
7877778758tRNA synthetases class II (D, K and N)
4238363840403839311Mitochondrial carrier protein
112recA bacterial DNA recombination protein
2214141513181813127Aminotransferase class I and II
8858979963Phosphoribosyl transferase domain
12129121211121292Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2212121112Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
2111117Bacterial regulatory helix-turn-helix proteins, AraC family
111111118Chaperonin 10 Kd subunit
11108131311131392C2 domain
2019101717181918138PH domain
66138868762bZIP transcription factor
1811182018181618137Aldehyde dehydrogenase family
2131091001211041381801031,068Fungal Zn(2)-Cys(6) binuclear cluster domain
2419182424222324178Cytochrome b5-like Heme/Steroid binding domain
5223533528Oxidoreductase molybdopterin binding domain
171191412181612109Oxidoreductase NAD-binding domain
2725242426242426200SNF2 family N-terminal domain
3222222116Ribosomal protein S7p/S5e
2221232524202121177Ubiquitin-conjugating enzyme
86699781063Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
111111118Hsp90 protein
2222222216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
42114113Chitin recognition protein
2214442322Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
2334626430Cupin
3232222218Annexin
111227Eukaryotic-type carbonic anhydrase
112Chalcone and stilbene synthases, N-terminal domain
33333333242-oxoacid dehydrogenases acyltransferase (catalytic domain)
6343334329Catalase
111111118Disintegrin
112UDP-glucoronosyl and UDP-glucosyl transferase
9456999859Aminotransferase class-III
2222222216Ribosomal protein S19
111111118DNA gyrase B
53610456645Thiamine pyrophosphate enzyme, central domain
3444545534Lyase
2222222216Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Sodium:neurotransmitter symporter family
111111118Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
2215Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
91010111110101384Kinesin motor domain
2526242828242832215DnaJ domain
1414141414141414112Proteasome subunit
11411110991065Major intrinsic protein
11111117ATP synthase
6124222221Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
2121111110Ribosomal protein L22p/L17e
2222232217Ribosomal protein L14p/L23e
1111817108101792Ubiquitin family
5444243430Cofilin/tropomyosin-type actin-binding protein
233222221814-3-3 protein
5434334430Alkaline phosphatase
1122311516Zinc carboxypeptidase
3718233322223322210Aldo/keto reductase family
131151712131518104Myb-like DNA-binding domain
4334644533Forkhead domain
5115457432Glycosyl hydrolases family 32 N-terminal domain
112111119Ribosomal protein L16p/L10e
2223122216Ribosomal protein S14p/S29e
4444444432FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
212212212
7669879759Flavodoxin
111111118Calreticulin family
476117451256Common central domain of tyrosinase
11988498966Aminotransferase class-V
111111118Ribonucleotide reductase, small chain
4142404246373843329DEAD/DEAH box helicase
7576697572667178582Helicase conserved C-terminal domain
111111219EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
1112211211Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2112222214Ribosomal protein L5
5656775748Pyridoxal-dependent decarboxylase conserved domain
3232332321Citrate synthase, C-terminal domain
5555555540GHMP kinases N terminal domain
7657667650Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
1399111110111084Pyridoxal-phosphate dependent enzyme
1412131415151614113NUDIX domain
7547555644pfkB family carbohydrate kinase
135261128Glycosyl hydrolases family 28
112127Luciferase-like monooxygenase
2222222216Ribosomal protein L3
2212122113Ribosomal protein L11, RNA binding domain
1615111611141516114Histidine phosphatase superfamily (branch 1)
111111118Thymidylate synthase
111126Lipoxygenase
4444444432ATP synthase alpha/beta chain, C terminal domain
5545554538Calponin homology (CH) domain
5624458640Glutamine amidotransferases class-II
2222222216Ribosomal protein S15
111111118Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
2222222216Ribosomal protein S2
2224322219SRF-type transcription factor (DNA-binding and dimerisation domain)
7769858959GATA zinc finger
492464833375832287Amino acid permease
2343234425Prolyl oligopeptidase family
1221122112Ribosomal protein L30p/L7e
11971071210975Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4446544637Aconitase family (aconitate hydratase)
44121214Glycosyl hydrolase family 10
5426144430Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
111111118Nucleoside diphosphate kinase
11Tetraspanin family
2121211111Ribosomal protein S10p/S20e
5332253326Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
111111118SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
3434533328Polyprenyl synthetase
4343343226Hexokinase
6885648752Dynamin family
1111211210Transcription factor TFIID (or TATA-binding protein, TBP)
8325585642Rieske [2Fe-2S] domain
11Phytochrome region
11Proton-conducting membrane transporter
9878888864Biotin-requiring enzyme
111111118Phosphofructokinase
2122212214Ribosomal protein S17
2111131111Hydroxymethylglutaryl-coenzyme A reductase
4334434429FGGY family of carbohydrate kinases, N-terminal domain
111115Sodium:dicarboxylate symporter family
9158201612917106Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
2232222217Transcription factor TFIIB repeat
8768887961Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
4535255534Chromo (CHRromatin Organisation MOdifier) domain
2233333322Phosphatidylinositol-specific phospholipase C, Y domain
4245534532Phosphatidylinositol-specific phospholipase C, X domain
6778679858D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2211221213Malic enzyme, N-terminal domain
22222222166-phosphogluconate dehydrogenase, C-terminal domain
111061481213882Multicopper oxidase
9789997967WW domain
111111118Ribosomal RNA adenine dimethylase
421514724Yeast PIR protein repeat
111115108101104127109103878WD domain, G-beta repeat
5363354332Heavy-metal-associated domain
3343253326Adenylate kinase
2132222115Phosphoglucomutase/phosphomannomutase, C-terminal domain
2121121111Ribosomal protein S8
112111119Ribosomal protein S11
4444444432LIM domain
11Matrixin
3231222116Regulator of chromosome condensation (RCC1) repeat
2222222216Ribosomal protein S13/S18
2222222216chorismate binding enzyme
333333332460s Acidic ribosomal protein
4444444432Prenyltransferase and squalene oxidase repeat
6636467543Protein kinase C terminal domain
11111117Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
9668688657Bromodomain
9111014151381393Acyl-CoA dehydrogenase, C-terminal domain
1514131715141715120Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
332242218Ribonuclease T2 family
3333333324HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
111111118Urease alpha-subunit, N-terminal domain
11106161311121392Serine carboxypeptidase
8888888864Phosphatidylinositol 3- and 4-kinase
3112232216Transketolase, thiamine diphosphate binding domain
31121210Glycosyl hydrolases family 11
4254434430Inositol monophosphatase family
4444244430Glutaredoxin
3324233424Isocitrate lyase family
2222222216Serine hydroxymethyltransferase
3243454429Iron-containing alcohol dehydrogenase
2221221214Ribosomal protein L10
2333644429KOW motif
11114Ribosomal protein L34
2333222219RF-1 domain
4132212217Sodium:solute symporter family
111111118Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
6656666647Protein phosphatase 2C
3243222321Nucleotidyl transferase
1332222116Carbonic anhydrase
111121119Phosphoribulokinase / Uridine kinase family
8645654644Fatty acid desaturase
6666666648MutS domain V
111111219Delta-aminolevulinic acid dehydratase
5144454431Arginase family
6666666648MCM P-loop domain
2232222217Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 3
991085108867FHA domain
4651265551484253372AMP-binding enzyme
3333423324G-protein alpha subunit
7676778856HMG (high mobility group) box
421791418221621159His Kinase A (phospho-acceptor) domain
3212332319Armadillo/beta-catenin-like repeat
2329122523202324179Tetratricopeptide repeat
4333433326Ion transport protein
211111119DNA gyrase/topoisomerase IV, subunit A
98681013131178BRCA1 C Terminus (BRCT) domain
10567456952Glycosyl transferases group 1
7427454437Glycosyl transferase family 2
2131411114SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
51222214Pectate lyase
121113110ribonuclease
111111118Urease, gamma subunit
4444444432CoA-ligase
111842115222318132Phosphopantetheine attachment site
5323433427Formyl transferase
969108791068Metallopeptidase family M24
161521616131517110Leucine Rich Repeat
413164123563740275alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
3334333325PB1 domain
2222222216Staphylococcal nuclease homologue
121112111110111189Rab-GTPase-TBC domain
111111118Tudor domain
111111118WH1 domain
4522333325Zinc finger, ZZ type
2111111210HRDC domain
910699911972CBS domain
2222222216Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
111111118Clp protease
3444334429S1 RNA binding domain
111111118HIUase/Transthyretin family
5343645333AhpC/TSA family
5455544436tRNA synthetases class I (W and Y)
1112111210UvrD/REP helicase N-terminal domain
5685546544Rhodanese-like domain
2222222216Universal stress protein family
4124234024464027265Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
7876777756tRNA synthetase class II core domain (G, H, P, S and T)
2222222216SpoU rRNA Methylase family
2222222216Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
11221119PDZ domain
5256577542Class II Aldolase and Adducin N-terminal domain
3444223426Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
4555455538Fes/CIP4, and EFC/F-BAR homology domain
5435434533IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
6335485438Phospholipase D Active site motif
1151111112Regulator of G protein signaling domain
3333333324GTPase-activator protein for Ras-like GTPase
4444444432RasGEF domain
4443233427RasGEF N-terminal motif
11Caspase recruitment domain
8887688861RhoGAP domain
6666455644RhoGEF domain
2223224118SPRY domain
3333333324RNA polymerase Rpb1, domain 2
111111118Guanylate kinase
4334434429Gelsolin repeat
910510610111172UBA/TS-N domain
1918111713171721133PHD-finger
11111117GGL domain
6666466747HECT-domain (ubiquitin-transferase)
2212213114Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
4536445738Ribonuclease III domain
1253122117Region in Clathrin and VPS
3222122317RanBP1 domain
2222222216PPIC-type PPIASE domain
1221112212Zn-finger in Ran binding protein and others
1514101513141815114Zinc finger C-x8-C-x5-C-x3-H type (and similar)
2222111213Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
775987377495056449F-box domain
111111118Elongation factor 1 gamma, conserved domain
2234222219Calpain family cysteine protease
2221112213Copper fist DNA binding domain
5555454538CRAL/TRIO domain
381313214101021130BTB/POZ domain
1113Ricin-type beta-trefoil lectin domain
112111119Inhibitor of Apoptosis domain
4344434531Voltage gated chloride channel
2212113113Caspase domain
96410373749GDSL-like Lipase/Acylhydrolase
211111119Poly-adenylate binding protein, unique domain
1113POLO box duplicated region
2720151719202515158ABC transporter transmembrane region
11Integrase core domain
6467567647FAD binding domain
6101981211764Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111111118HAMP domain
2222222216ribosomal L5P family C-terminus
5666566545Insulinase (Peptidase family M16)
3333333324Dehydrogenase E1 component
111111118Lumazine binding domain
6666567648Elongation factor G C-terminus
5446644639HMGL-like
4444444432DnaJ central domain
324416424Starch binding domain
3232222218Ribosomal protein L1p/L10e family
6567865851Cation transporting ATPase, C-terminus
7587866754Cation transporter/ATPase, N-terminus
2212212214dUTPase
4446544637Aconitase C-terminal domain
3333333324Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
8103913118971Acyl transferase domain
111111118Urease beta subunit
10132373332Dihydrodipicolinate synthetase family
3029143230323230229haloacid dehalogenase-like hydrolase
2117722628Glycosyl hydrolases family 2
716311913111282Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
111111118Acylphosphatase
111111118Adenylosuccinate synthetase
2111213213Asparaginase, N-terminal
3333243324Peptidase S24-like
111111118Inorganic pyrophosphatase
176129887875Glycosyl hydrolases family 16
312123113Glycosyl hydrolases family 15
95371055953NADH:flavin oxidoreductase / NADH oxidase family
62234233253-hydroxyacyl-CoA dehydrogenase, C-terminal domain
111211119Glycosyl hydrolase family 20, catalytic domain
5554434434HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
23817211814919129GMC oxidoreductase
3422134322Asparagine synthase
639Fungal cellulose binding domain
4565555540Septin
111111118EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
223119Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
3333343325tRNA synthetases class I (E and Q), catalytic domain
111111118tRNA synthetases class I (R)
5444345433XPG N-terminal domain
7139128812978Metallo-beta-lactamase superfamily
314F5/8 type C domain
2222222216Choline/Carnitine o-acyltransferase
1113111110Putative esterase
11Glycosyl hydrolase family 9
111111118Ferrochelatase
2222222216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11