PFAM Domains • Micromonas pusilla CCMP1545
Annotations/GenomesChlre4MicpuC3MicpuC3v2MicpuN3v2Ost9901_3OstRCC809_2Ostta4TotalAnnotation Description
PFAMs
7,5657,7598,0298,4095,4773,1164,87045,225
52585857462944344ATPase family associated with various cellular activities (AAA)
64545253472341334ABC transporter
445553531ATP synthase alpha/beta family, nucleotide-binding domain
9111214EGF-like domain
17212121211418133Elongation factor Tu GTP binding domain
822112117Helix-loop-helix DNA-binding domain
633431424Hsp20/alpha crystallin family
8121110104762Hsp70 protein
13323333211421167KH domain
112Kunitz/Bovine pancreatic trypsin inhibitor domain
22221110Ribulose bisphosphate carboxylase large chain, catalytic domain
11SH2 domain
33TNFR/NGFR cysteine-rich region
544464633Actin
1079691111571853533Ankyrin repeat
1214421PAN domain
1610101175564ADP-ribosylation factor family
312242317Eukaryotic aspartyl protease
1827293211511133Cyclic nucleotide-binding domain
11Cystatin domain
1111116Cytochrome b(C-terminal)/b6/petD
422211214Cytochrome c
2112219Double-stranded RNA binding motif
101959893351836476EF hand
6233422224Fe-4S binding domain
422321317Fibronectin type III domain
2248Globin
911121133150Glutathione S-transferase, C-terminal domain
355533327Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
111174437Homeodomain
7119Kazal-type serine protease inhibitor domain
11132311Kringle domain
1113Laminin B (Domain IV)
112Laminin EGF domain
555555535lactate/malate dehydrogenase, NAD binding domain
1515Lectin C-type domain
11Ligand-gated ion channel
322211112Myosin head (motor domain)
351212121061097Cytochrome P450
42312012213410250931,044Protein kinase domain
161212141181083Pyridine nucleotide-disulphide oxidoreductase
141313151251284Ras family
1211131184766Response regulator receiver domain
222129RNase H
85788379592650460RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Reverse transcriptase (RNA-dependent DNA polymerase)
1113Serpin (serine protease inhibitor)
33331316Copper/zinc superoxide dismutase (SODC)
4111119Iron/manganese superoxide dismutases, alpha-hairpin domain
1078622136Subtilase family
169761541370Sugar (and other) transporter
213Sushi repeat (SCR repeat)
26424344251623219Thioredoxin
914141034559Trypsin
331119Thrombospondin type 1 domain
1088884753Tubulin/FtsZ family, GTPase domain
5112110von Willebrand factor type A domain
8121317101667Zinc finger, C2H2 type
79687477481635397Zinc finger, C3HC4 type (RING finger)
121417171021284Zinc knuckle
223232317Ribulose bisphosphate carboxylase, small chain
311117Protein-tyrosine phosphatase
36313835191018187short chain dehydrogenase
13910101211166Zinc-binding dehydrogenase
21111118Thiolase, N-terminal domain
420106821868Beta-ketoacyl synthase, N-terminal domain
139910856602Fe-2S iron-sulfur cluster binding domain
15981095965Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
11Cytochrome C oxidase subunit II, periplasmic domain
577764642Glutamine amidotransferase class-I
121212111481180TCP-1/cpn60 chaperonin family
11ATP synthase A chain
533311117Glutamine synthetase, catalytic domain
133242217Triosephosphate isomerase
201313151581195E1-E2 ATPase
12416161612513202Core histone H2A/H2B/H3/H4
122211110Copper binding proteins, plastocyanin/azurin family
814151698878Alpha amylase, catalytic domain
1211161086770Bacterial transferase hexapeptide (six repeats)
555591838tRNA synthetases class I (I, L, M and V)
14878105759Cyclin, N-terminal domain
12216Carboxylesterase family
444432324DNA polymerase family B
422341319ATP synthase subunit C
222118Legume lectin domain
1111116Sigma-70 factor, region 1.2
633531425Peroxidase
231118Beta-lactamase
51312853551C-5 cytosine-specific DNA methylase
25293030201518167Calcineurin-like phosphoesterase
112Cellulase (glycosyl hydrolase family 5)
566674640tRNA synthetases class II (D, K and N)
44434347421639274Mitochondrial carrier protein
1111116recA bacterial DNA recombination protein
11141414127981Aminotransferase class I and II
988892852Phosphoribosyl transferase domain
11Sigma-54 interaction domain
2426272823722157Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
22222212Phosphoglycerate kinase
122211110Ribosomal protein S4/S9 N-terminal domain
21111118Ribosomal protein S12/S23
433341321Chaperonin 10 Kd subunit
281516191149102C2 domain
567752234PH domain
689953545bZIP transcription factor
855762639Aldehyde dehydrogenase family
14202222191318128Cytochrome b5-like Heme/Steroid binding domain
233321115Oxidoreductase molybdopterin binding domain
8999115859Oxidoreductase NAD-binding domain
1727273021920151SNF2 family N-terminal domain
21111118Ribosomal protein S7p/S5e
2119192013614112Ubiquitin-conjugating enzyme
42213214Isocitrate/isopropylmalate dehydrogenase
222221213Ribosomal Proteins L2, RNA binding domain
344443426Hsp90 protein
222221213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
22Chitin recognition protein
131115Cysteine-rich secretory protein family
2111117Ribosomal protein S3, C-terminal domain
11Cupin
11114Annexin
31116Eukaryotic-type carbonic anhydrase
6444534302-oxoacid dehydrogenases acyltransferase (catalytic domain)
11Catalase
4138Disintegrin
11UDP-glucoronosyl and UDP-glucosyl transferase
744652432Aminotransferase class-III
11111117Ribosomal protein S19
222222214DNA gyrase B
2111117Thiamine pyrophosphate enzyme, central domain
144442423Lyase
11Alpha-2-macroglobulin family
22Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1113Sodium:neurotransmitter symporter family
2111218Ferritin-like domain
65211170Adenylate and Guanylate cyclase catalytic domain
22222212ATP synthase delta (OSCP) subunit
1111217Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Bacterial DNA-binding protein
11111117Indole-3-glycerol phosphate synthase
788821236Pyruvate kinase, barrel domain
3533323915416174Kinesin motor domain
59738082571951421DnaJ domain
1515151618816103Proteasome subunit
11TNF(Tumour Necrosis Factor) family
3115Major intrinsic protein
222222214ATP synthase
21115Glycosyl hydrolase family 1
2644622443'5'-cyclic nucleotide phosphodiesterase
33219Protease inhibitor/seed storage/LTP family
1111116Profilin
333332219Ribosomal protein L22p/L17e
2111117Ribosomal protein L14p/L23e
2014181964586Ubiquitin family
1111116Cofilin/tropomyosin-type actin-binding protein
22223221514-3-3 protein
11114Alkaline phosphatase
866622131Zinc carboxypeptidase
171616171071093Aldo/keto reductase family
33374039341630229Myb-like DNA-binding domain
33Glycosyl hydrolases family 32 N-terminal domain
112Ribosomal protein L16p/L10e
11114Ribosomal protein S14p/S29e
2330333026821171FKBP-type peptidyl-prolyl cis-trans isomerase
565553332Glutathione peroxidase
22223213
1066654441Flavodoxin
11
11Protamine P1
222211111Calreticulin family
122221212Thymidine kinase
6991343448Aminotransferase class-V
222222214Ribonucleotide reductase, small chain
55646568802672430DEAD/DEAH box helicase
831121101161034297663Helicase conserved C-terminal domain
422333320Fructose-bisphosphate aldolase class-I
1221118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
1222119Ribosomal protein L23
43322216Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
222132214Pyridoxal-dependent decarboxylase conserved domain
133321215Citrate synthase, C-terminal domain
677865544GHMP kinases N terminal domain
443444427Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
91111141081073Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
2714141818813112NUDIX domain
710111383557pfkB family carbohydrate kinase
233332319Ribosomal protein L3
333332320Ribosomal protein L11, RNA binding domain
131515181051187Histidine phosphatase superfamily (branch 1)
466832332Rubredoxin
11111117Thymidylate synthase
112Lipoxygenase
444443326ATP synthase alpha/beta chain, C terminal domain
233222216Calponin homology (CH) domain
277754537Glutamine amidotransferases class-II
111115Phosphoenolpyruvate carboxylase
333321217Ribosomal protein S15
14433419'Cold-shock' DNA-binding domain
355553531Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
11111117Ribosomal protein S2
21111118SRF-type transcription factor (DNA-binding and dimerisation domain)
71011994454GATA zinc finger
21121119Amino acid permease
555511123Prolyl oligopeptidase family
222111110Ribosomal protein L30p/L7e
222118Histidine phosphatase superfamily (branch 2)
11Respiratory-chain NADH dehydrogenase, 30 Kd subunit
233332218Aconitase family (aconitate hydratase)
233343321Ribosomal protein S5, N-terminal domain
444431323Nucleoside diphosphate kinase
112Tetraspanin family
32222213Ribosomal protein S10p/S20e
1124Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
233331419Carbohydrate phosphorylase
333332320SecY translocase
11Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222221213Ribosomal protein L6
445443428Polyprenyl synthetase
11Hexokinase
655532228Dynamin family
11Biopterin-dependent aromatic amino acid hydroxylase
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
169912105869Rieske [2Fe-2S] domain
112Phytochrome region
1089885755Biotin-requiring enzyme
23332215Phosphofructokinase
34333319Ribosomal protein S17
355433225FGGY family of carbohydrate kinases, N-terminal domain
112FERM central domain
11114Sodium:dicarboxylate symporter family
655555637Enoyl-CoA hydratase/isomerase
222221213Ribosomal protein S9/S16
233331217Transcription factor TFIIB repeat
68877642Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
366532227Chromo (CHRromatin Organisation MOdifier) domain
1111116Phosphatidylinositol-specific phospholipase C, Y domain
1111116Phosphatidylinositol-specific phospholipase C, X domain
444433123D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
644453531Malic enzyme, N-terminal domain
222222214PEP-utilising enzyme, mobile domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
22Multicopper oxidase
22Granulin
1725262312614123WW domain
23322214Ribosomal RNA adenine dimethylase
17016616716611657104946WD domain, G-beta repeat
112ATP synthase, Delta/Epsilon chain, long alpha-helix domain
777751640Heavy-metal-associated domain
877954545Adenylate kinase
211141212Phosphoglucomutase/phosphomannomutase, C-terminal domain
111115Ribosomal protein S8
1111116Ribosomal protein S11
33423318LIM domain
91111181171077Regulator of chromosome condensation (RCC1) repeat
322221214Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
233331318chorismate binding enzyme
34433122060s Acidic ribosomal protein
1111116ATP synthase B/B' CF(0)
11CUB domain
333332320Prenyltransferase and squalene oxidase repeat
2332111Protein kinase C terminal domain
1111116Single-strand binding protein family
11112118S-adenosylmethionine synthetase, N-terminal domain
10111191261170Bromodomain
644452429Acyl-CoA dehydrogenase, C-terminal domain
161212131151180Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
111115Ribonuclease T2 family
244611119HSF-type DNA-binding
444452427SRP54-type protein, GTPase domain
1113Urease alpha-subunit, N-terminal domain
722222219Serine carboxypeptidase
11111117Ribosomal protein L20
999895756Phosphatidylinositol 3- and 4-kinase
11111117Transketolase, thiamine diphosphate binding domain
1233110WHEP-TRS domain
688971645Inositol monophosphatase family
711121523252Glutaredoxin
1113Isocitrate lyase family
333333321Serine hydroxymethyltransferase
32211110Iron-containing alcohol dehydrogenase
33332216Ribosomal protein L10
744582838KOW motif
22222212Ribosomal protein L34
22222111Ribosomal protein L33
35543323RF-1 domain
622243221Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
233333320DNA polymerase family A
11112118IMP dehydrogenase / GMP reductase domain
13331112Glucose-6-phosphate dehydrogenase, NAD binding domain
111115ROK family
2314151514713101Protein phosphatase 2C
655533532Nucleotidyl transferase
4111119Carbonic anhydrase
433343323Phosphoribulokinase / Uridine kinase family
101515141291388Fatty acid desaturase
510101084956MutS domain V
11111117Delta-aminolevulinic acid dehydratase
1124Arginase family
899894956MCM P-loop domain
233332319Squalene/phytoene synthase
1114151193770FHA domain
111615161161085AMP-binding enzyme
36242428211516164Chlorophyll A-B binding protein
911121193560HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
767611230His Kinase A (phospho-acceptor) domain
168111122353Armadillo/beta-catenin-like repeat
57576267532348367Tetratricopeptide repeat
3222222913513136Ion transport protein
222222315DNA gyrase/topoisomerase IV, subunit A
22Binding-protein-dependent transport system inner membrane component
2525Scavenger receptor cysteine-rich domain
413141255760BRCA1 C Terminus (BRCT) domain
141616191361195Glycosyl transferases group 1
577963441Glycosyl transferase family 2
645711226SAM domain (Sterile alpha motif)
32229linker histone H1 and H5 family
222221213Ribosomal protein L7/L12 C-terminal domain
11114Nitrogen regulatory protein P-II
1113Urease, gamma subunit
222221213CoA-ligase
378963339Phosphopantetheine attachment site
422221316Formyl transferase
799985754Metallopeptidase family M24
9055549825824354Leucine Rich Repeat
1826272715713133alpha/beta hydrolase fold
333442322RNA polymerase Rpb2, domain 6
56424425PB1 domain
222231113Staphylococcal nuclease homologue
944764539Rab-GTPase-TBC domain
11112118Tudor domain
4991073547Zinc finger, ZZ type
3115HRDC domain
1322222116412110CBS domain
33333318Ribosomal protein L13
333331319Ribosomal protein L4/L1 family
888884953Clp protease
510101299863S1 RNA binding domain
112HIUase/Transthyretin family
733552328AhpC/TSA family
444452427tRNA synthetases class I (W and Y)
2111117UvrD/REP helicase N-terminal domain
1268852647Rhodanese-like domain
39862331Universal stress protein family
32343438221126197Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
21111118AIR synthase related protein, N-terminal domain
899996959tRNA synthetase class II core domain (G, H, P, S and T)
8131212102865SpoU rRNA Methylase family
3115Phage integrase family
355543429Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
10791093553PDZ domain
1111116Class II Aldolase and Adducin N-terminal domain
2215
234421218Diacylglycerol kinase accessory domain
11111117Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
32374446956179IQ calmodulin-binding motif
21111118Phosphoinositide 3-kinase family, accessory domain (PIK domain)
1124Phospholipase D Active site motif
12216RhoGAP domain
52233217SPRY domain
333331319RNA polymerase Rpb1, domain 2
433311116Guanylate kinase
344733327Gelsolin repeat
1517221914712106UBA/TS-N domain
28262928211015157PHD-finger
25561221Filamin/ABP280 repeat
810101081451HECT-domain (ubiquitin-transferase)
155242423Helix-hairpin-helix motif
1111116BRCA2 repeat
122211110MSP (Major sperm protein) domain
31116Ribonuclease III domain
1111116Region in Clathrin and VPS
122221111RanBP1 domain
233332218PPIC-type PPIASE domain
312141512451Zn-finger in Ran binding protein and others
2226353422619164Zinc finger C-x8-C-x5-C-x3-H type (and similar)
144433423B-box zinc finger
222118Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
6332424010410201F-box domain
455531225Calpain family cysteine protease
15661085858CRAL/TRIO domain
3133321144BTB/POZ domain
11Ricin-type beta-trefoil lectin domain
565641330Voltage gated chloride channel
21115Caspase domain
211412213GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
1610101275666ABC transporter transmembrane region
213Integrase core domain
433352323FAD binding domain
1113Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116ribosomal L5P family C-terminus
777772542Insulinase (Peptidase family M16)
444441425Dehydrogenase E1 component
11111117Lumazine binding domain
7999106959Elongation factor G C-terminus
333321217HMGL-like
322221214DnaJ central domain
42232114Sulfotransferase domain
10691011441Starch binding domain
334432423Ribosomal protein L1p/L10e family
934553332Cation transporting ATPase, C-terminus
1144554336Cation transporter/ATPase, N-terminus
11OmpA family
11111117dUTPase
22221110Aconitase C-terminal domain
777774746Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
122221212Acyl transferase domain
1113Urease beta subunit
1112117Dihydrodipicolinate synthetase family
43333340321731229haloacid dehalogenase-like hydrolase
1112117Glycosyl hydrolases family 2
711111113Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
211222212Translation initiation factor IF-3, C-terminal domain
11Acylphosphatase
11111117Adenylosuccinate synthetase
11112118Asparaginase, N-terminal
433432322Peptidase S24-like
3111118Inorganic pyrophosphatase
1113Glycosyl hydrolases family 16
4116NADH:flavin oxidoreductase / NADH oxidase family
21111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
477642333HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
112GMC oxidoreductase
244442222Asparagine synthase
111115Fungal cellulose binding domain
11Septin
222222214Homoserine dehydrogenase
123Flavin-binding monooxygenase-like
11111117Glutamyl-tRNAGlu reductase, dimerisation domain
333431320tRNA synthetases class I (E and Q), catalytic domain
122222112tRNA synthetases class I (R)
43335220XPG N-terminal domain
7101113104863Metallo-beta-lactamase superfamily
22221110F5/8 type C domain
22212110Putative esterase
33Glycosyl hydrolase family 9
1111116Ferrochelatase
33333217Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11Electron transfer flavoprotein FAD-binding domain
244442424RNB domain
11Dioxygenase
11Glycosyltransferase family 29 (sialyltransferase)
15663223Diacylglycerol kinase catalytic domain
99101032245Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
3227
344565734PX domain
477652435UBX domain
111115VHS domain
111115Phosphoinositide 3-kinase C2
11DAHP synthetase I family
544821428Carbon-nitrogen hydrolase
11Photosystem I reaction centre subunit VIII
11111117Prephenate dehydratase
433432322Syntaxin
466651533Pentapeptide repeats (8 copies)
422221215Pumilio-family RNA binding repeat
666752537Histone-like transcription factor (CBF/NF-Y) and archaeal histone
222221213Pterin binding enzyme
111231211ER lumen protein retaining receptor
3322212Glycoprotease family
11111117Histidinol dehydrogenase
433541323impB/mucB/samB family
111115Ribonuclease P
11111117
11111117Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
222221213Ribosomal prokaryotic L21 protein
122221111Ribosomal L28 family
22222212Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
233333320Ribulose-phosphate 3 epimerase family
31116Cysteine rich repeat
1513141394876AP2 domain
819201817416102RNA pseudouridylate synthase
13999105762Histone deacetylase domain
11114POT family
424431321PWWP domain
23384040211113186SET domain
52251217Isochorismatase family
516Permease family
233332218Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
1113ATP P2X receptor
24436423XPG I-region
22Acetokinase family
578863542DNA photolyase
1113NlpC/P60 family
1113Nitroreductase family
22222212Cytosol aminopeptidase family, catalytic domain
1616Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
222211212Ribosomal protein S16
466412225Acyl CoA binding protein
344432323Cullin family
222221213Elongation factor TS
3661055439FAD binding domain
22O-methyltransferase domain
714141486871EamA-like transporter family
81111993657ThiF family
11111117Ribosomal family S4e
11