PFAM Domains • Lobaria pulmonaria Scotland reference genome v1.0
Annotations/GenomesAstpho2Clagr3Dicre1EndpusZ1Lobpul1Tryvi1Usnflo1Xanpa2TotalAnnotation Description
PFAMs
7,9527,5279,7508,88910,9008,54010,4247,13671,118
117 transmembrane receptor (rhodopsin family)
1127 transmembrane receptor (Secretin family)
6050564555656550446ATPase family associated with various cellular activities (AAA)
5731763834293037332ABC transporter
4454444433ATP synthase alpha/beta family, nucleotide-binding domain
33EGF-like domain
2114201416141514128Elongation factor Tu GTP binding domain
3939886551Helix-loop-helix DNA-binding domain
13372322234Hsp20/alpha crystallin family
12791116712781Hsp70 protein
1210127788973KH domain
11114SH2 domain
1241314221320107SH3 domain
6116111010101074Actin
5319515561011294277668Ankyrin repeat
113112110PAN domain
11786777760ADP-ribosylation factor family
21510927152414116Eukaryotic aspartyl protease
224164444462Cyclic nucleotide-binding domain
112Cystatin domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
211111119Cytochrome c
321222113Double-stranded RNA binding motif
43202316317104EF hand
321174Fe-4S binding domain
23121211Fibronectin type III domain
112Globin
12128910209989Glutathione S-transferase, C-terminal domain
3131111112Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
3513393532Homeodomain
22Kazal-type serine protease inhibitor domain
11Laminin EGF domain
5242223222lactate/malate dehydrogenase, NAD binding domain
22Ligand-gated ion channel
3525554534Myosin head (motor domain)
22913210420512715898837Cytochrome P450
1821142001581721191391141,198Protein kinase domain
1513151012201213110Pyridine nucleotide-disulphide oxidoreductase
1826132225232622175Ras family
11117161213131295Response regulator receiver domain
143254423RNase H
9260785150625367513RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
369Reverse transcriptase (RNA-dependent DNA polymerase)
33333116Copper/zinc superoxide dismutase (SODC)
6131221117Iron/manganese superoxide dismutases, alpha-hairpin domain
118114192413393Subtilase family
1235212533504132249Sugar (and other) transporter
308308810107111Thioredoxin
11Trefoil (P-type) domain
1049111127Trypsin
22Thrombospondin type 1 domain
9373343335Tubulin/FtsZ family, GTPase domain
3311442321von Willebrand factor type A domain
77011330502349243Zinc finger, C2H2 type
554153242343194Zinc finger, C3HC4 type (RING finger)
159891182769Zinc knuckle
112Ribulose bisphosphate carboxylase, small chain
2212322216Protein-tyrosine phosphatase
579054699414311586708short chain dehydrogenase
2350194053737143372Zinc-binding dehydrogenase
2525555433Thiolase, N-terminal domain
333112244416429247Beta-ketoacyl synthase, N-terminal domain
94712423322Fe-2S iron-sulfur cluster binding domain
9817Papain family cysteine protease
111111118Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
7888888863Glutamine amidotransferase class-I
13101291010101084TCP-1/cpn60 chaperonin family
11ATP synthase A chain
3335453228Glutamine synthetase, catalytic domain
2222222216Triosephosphate isomerase
1311161717122012118E1-E2 ATPase
2992068810797Core histone H2A/H2B/H3/H4
112Bacterial regulatory helix-turn-helix protein, lysR family
112Copper binding proteins, plastocyanin/azurin family
114812377759Alpha amylase, catalytic domain
22221211Phorbol esters/diacylglycerol binding domain (C1 domain)
10796587658Bacterial transferase hexapeptide (six repeats)
4375544436tRNA synthetases class I (I, L, M and V)
861178610460Cyclin, N-terminal domain
177162613878Carboxylesterase family
6474444437DNA polymerase family B
3322354426ATP synthase subunit C
5154323225Peroxidase
175873839Beta-lactamase
4253534430C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
3324342327292325218Calcineurin-like phosphoesterase
262279147875Cellulase (glycosyl hydrolase family 5)
6667888655tRNA synthetases class II (D, K and N)
3737373338383636292Mitochondrial carrier protein
111115recA bacterial DNA recombination protein
1713171417201413125Aminotransferase class I and II
9844484647Phosphoribosyl transferase domain
11Sigma-54 interaction domain
17821111011101199Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
2121111110Phosphoglycerate kinase
3221122215Ribosomal protein S4/S9 N-terminal domain
1212222214Ribosomal protein S12/S23
211116Bacterial regulatory helix-turn-helix proteins, AraC family
4141111114Chaperonin 10 Kd subunit
17101391010101291C2 domain
91661091781590PH domain
109231111713892bZIP transcription factor
1011141313221712112Aldehyde dehydrogenase family
106509316211074595Fungal Zn(2)-Cys(6) binuclear cluster domain
141871818211719132Cytochrome b5-like Heme/Steroid binding domain
2421353222Oxidoreductase molybdopterin binding domain
1010139710111181Oxidoreductase NAD-binding domain
2434263035283324234SNF2 family N-terminal domain
1212222214Ribosomal protein S7p/S5e
2022232124232222177Ubiquitin-conjugating enzyme
4643787645Isocitrate/isopropylmalate dehydrogenase
3222222217Ribosomal Proteins L2, RNA binding domain
3141111113Hsp90 protein
2222222216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
112111119Dihydrofolate reductase
41626625Chitin recognition protein
2113344624Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
3253434327Cupin
21222211Annexin
11215Eukaryotic-type carbonic anhydrase
3111219Chalcone and stilbene synthases, N-terminal domain
53533333282-oxoacid dehydrogenases acyltransferase (catalytic domain)
2624547232Catalase
1111116Disintegrin
1192424133UDP-glucoronosyl and UDP-glucosyl transferase
7784558448Aminotransferase class-III
111222211Ribosomal protein S19
2121111110DNA gyrase B
46344107442Thiamine pyrophosphate enzyme, central domain
3334343326Lyase
5232322221Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
426Ferritin-like domain
121181111136Adenylate and Guanylate cyclase catalytic domain
2121111110ATP synthase delta (OSCP) subunit
111121119Orotidine 5'-phosphate decarboxylase / HUMPS family
11Bacterial DNA-binding protein
1121211110Indole-3-glycerol phosphate synthase
32923322Aromatic amino acid lyase
6151111117Pyruvate kinase, barrel domain
371123101010119121Kinesin motor domain
4927472430263128262DnaJ domain
2114161415141414122Proteasome subunit
10785687455Major intrinsic protein
2121111110ATP synthase
63110Glycosyl hydrolase family 1
1111711111343'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
3132211114Ribosomal protein L22p/L17e
2221422217Ribosomal protein L14p/L23e
206181211131112103Ubiquitin family
1413444425Cofilin/tropomyosin-type actin-binding protein
121332331814-3-3 protein
22231515Alkaline phosphatase
7141221220Zinc carboxypeptidase
2421231828292618187Aldo/keto reductase family
32132681317915133Myb-like DNA-binding domain
44454526Forkhead domain
3152211116Glycosyl hydrolases family 32 N-terminal domain
1221219Ribosomal protein L16p/L10e
111222211Ribosomal protein S14p/S29e
204163343356FKBP-type peptidyl-prolyl cis-trans isomerase
3131111112Glutathione peroxidase
431210
7774578752Flavodoxin
111111118Calreticulin family
551462335Common central domain of tyrosinase
224Thymidine kinase
119126879769Aminotransferase class-V
3121111111Ribonucleotide reductase, small chain
5545644358374541388DEAD/DEAH box helicase
9788897689778074670Helicase conserved C-terminal domain
527Fructose-bisphosphate aldolase class-I
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
2131212214Pyridoxal-dependent decarboxylase, C-terminal sheet domain
112Potato inhibitor I family
1211222213Ribosomal protein L5
7665777752Pyridoxal-dependent decarboxylase conserved domain
3445639438Citrate synthase, C-terminal domain
5554555539GHMP kinases N terminal domain
5675676648Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
910147999976Pyridoxal-phosphate dependent enzyme
2014171513151612122NUDIX domain
114105846755pfkB family carbohydrate kinase
211316Glycosyl hydrolases family 28
12115Luciferase-like monooxygenase
3232222218Ribosomal protein L3
3232222218Ribosomal protein L11, RNA binding domain
1811121013151313105Histidine phosphatase superfamily (branch 1)
3126Rubredoxin
11311119Thymidylate synthase
12411110Lipoxygenase
3424444429ATP synthase alpha/beta chain, C terminal domain
3524555534Calponin homology (CH) domain
4523362631Glutamine amidotransferases class-II
224Phosphoenolpyruvate carboxylase
3232222218Ribosomal protein S15
225211'Cold-shock' DNA-binding domain
1111116Thaumatin family
5131111114Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
1212222214Ribosomal protein S2
1212232215SRF-type transcription factor (DNA-binding and dimerisation domain)
127126678866GATA zinc finger
3331011331137138Amino acid permease
8376549345Prolyl oligopeptidase family
3222211215Ribosomal protein L30p/L7e
27468106649Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
2426444430Aconitase family (aconitate hydratase)
44Glycosyl hydrolase family 10
33353623Glycosyl hydrolases family 17
3232222218Ribosomal protein S5, N-terminal domain
514111114Nucleoside diphosphate kinase
11215Tetraspanin family
1221222214Ribosomal protein S10p/S20e
44465225Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
2121111110Carbohydrate phosphorylase
3131111112SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2232222217Ribosomal protein L6
5643845742Polyprenyl synthetase
2324343425Hexokinase
7771113712872Dynamin family
112Biopterin-dependent aromatic amino acid hydroxylase
2121111110Transcription factor TFIID (or TATA-binding protein, TBP)
134184232450Rieske [2Fe-2S] domain
1113Phytochrome region
44Proton-conducting membrane transporter
107147798870Biotin-requiring enzyme
3121211112Phosphofructokinase
3131221215Ribosomal protein S17
1111217Hydroxymethylglutaryl-coenzyme A reductase
4333333325FGGY family of carbohydrate kinases, N-terminal domain
11FERM central domain
213Sodium:dicarboxylate symporter family
686810911866Enoyl-CoA hydratase/isomerase
3222222217Ribosomal protein S9/S16
2222224218Transcription factor TFIIB repeat
5566887752Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
7488876452Chromo (CHRromatin Organisation MOdifier) domain
22222212Phosphatidylinositol-specific phospholipase C, Y domain
23323316Phosphatidylinositol-specific phospholipase C, X domain
8574685548D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
5222211116Malic enzyme, N-terminal domain
12121212126-phosphogluconate dehydrogenase, C-terminal domain
121591912260Multicopper oxidase
1113Granulin
148107111011980WW domain
2121212112Ribosomal RNA adenine dimethylase
414817Yeast PIR protein repeat
140106130109129107107108936WD domain, G-beta repeat
4464455537Heavy-metal-associated domain
7353435434Adenylate kinase
2332323321Phosphoglucomutase/phosphomannomutase, C-terminal domain
1212222113Ribosomal protein S8
1111222212Ribosomal protein S11
1515444428LIM domain
213Matrixin
10135333239Regulator of chromosome condensation (RCC1) repeat
2122222215Ribosomal protein S13/S18
4233222220chorismate binding enzyme
334324332560s Acidic ribosomal protein
112ATP synthase B/B' CF(0)
3834343533Prenyltransferase and squalene oxidase repeat
3624464736Protein kinase C terminal domain
111111118Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
107158797669Bromodomain
510897119968Acyl-CoA dehydrogenase, C-terminal domain
1914171615151514125Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
2111132112Ribonuclease T2 family
2333333323HSF-type DNA-binding
4252222221SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
51066141611876Serine carboxypeptidase
11Apoptosis regulator proteins, Bcl-2 family
112Ribosomal protein L20
127117787766Phosphatidylinositol 3- and 4-kinase
2111121110Transketolase, thiamine diphosphate binding domain
55Glycosyl hydrolases family 11
112WHEP-TRS domain
4242331221Inositol monophosphatase family
13493444445Glutaredoxin
4312242321Isocitrate lyase family
2423322220Serine hydroxymethyltransferase
34242217Iron-containing alcohol dehydrogenase
4132222218Ribosomal protein L10
3253141221KOW motif
211116Ribosomal protein L34
21115Ribosomal protein L33
4242413323RF-1 domain
3271323223Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
2131111111DNA polymerase family A
112111119IMP dehydrogenase / GMP reductase domain
3221212215Glucose-6-phosphate dehydrogenase, NAD binding domain
196225655775Protein phosphatase 2C
5364333330Nucleotidyl transferase
4242234324Carbonic anhydrase
5161212119Phosphoribulokinase / Uridine kinase family
12574866654Fatty acid desaturase
9696666654MutS domain V
111111118Delta-aminolevulinic acid dehydratase
45453425Arginase family
8687666653MCM P-loop domain
4243323223Squalene/phytoene synthase
22Bacterial extracellular solute-binding proteins, family 3
148151110910986FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
1545173252486146316AMP-binding enzyme
85685537G-protein alpha subunit
222648Chlorophyll A-B binding protein
58108898965HMG (high mobility group) box
11Cytochrome c oxidase subunit III
6731291110866His Kinase A (phospho-acceptor) domain
18363423342Armadillo/beta-catenin-like repeat
5730151616301323200Tetratricopeptide repeat
12381333336Ion transport protein
2121111110DNA gyrase/topoisomerase IV, subunit A
11Binding-protein-dependent transport system inner membrane component
810568112959BRCA1 C Terminus (BRCT) domain
176208375571Glycosyl transferases group 1
10742232939Glycosyl transferase family 2
2422322421SAM domain (Sterile alpha motif)
12111118linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
112Nitrogen regulatory protein P-II
11Pectate lyase
1224110ribonuclease
1111116Urease, gamma subunit
2434344428CoA-ligase
22582459348227261Phosphopantetheine attachment site
3233222219Formyl transferase
11Cellulose binding domain
10788788864Metallopeptidase family M24
6911211415312136Leucine Rich Repeat
3529111847934174alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
2224344223PB1 domain
2222222216Staphylococcal nuclease homologue
111110101210121288Rab-GTPase-TBC domain
111111118Tudor domain
1111116WH1 domain
2644555334Zinc finger, ZZ type
3212222216HRDC domain
138137897873CBS domain
3231222217Ribosomal protein L13
4232222219Ribosomal protein L4/L1 family
9182111124Clp protease
114123444345S1 RNA binding domain
111111118HIUase/Transthyretin family
11352244334AhpC/TSA family
4454655437tRNA synthetases class I (W and Y)
2122212214UvrD/REP helicase N-terminal domain
64157746453Rhodanese-like domain
11362222230Universal stress protein family
2727251616342332200Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2231222216AIR synthase related protein, N-terminal domain
9866787859tRNA synthetase class II core domain (G, H, P, S and T)
6161121119SpoU rRNA Methylase family
4232222219Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
42711116PDZ domain
2344375230Class II Aldolase and Adducin N-terminal domain
11Influenza non-structural protein (NS1)
336Diacylglycerol kinase accessory domain
1414444426Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
244555530Fes/CIP4, and EFC/F-BAR homology domain
19562361547IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
2612252424Phospholipase D Active site motif
15715120Regulator of G protein signaling domain
33333318GTPase-activator protein for Ras-like GTPase
44444424RasGEF domain
44444424RasGEF N-terminal motif
31028989857RhoGAP domain
66656635RhoGEF domain
5645737542SPRY domain
4342333325RNA polymerase Rpb1, domain 2
4111111111Guanylate kinase
2334333324Gelsolin repeat
1310124394964UBA/TS-N domain
1717181414161318127PHD-finger
235Filamin/ABP280 repeat
111115GGL domain
96106666655HECT-domain (ubiquitin-transferase)
222121212Helix-hairpin-helix motif
112111119MSP (Major sperm protein) domain
4733453837Ribonuclease III domain
1243415323Region in Clathrin and VPS
2323323321RanBP1 domain
4211222216PPIC-type PPIASE domain
5442213324Zn-finger in Ran binding protein and others
221697715817101Zinc finger C-x8-C-x5-C-x3-H type (and similar)
112B-box zinc finger
1314115218Poly(ADP-ribose) polymerase catalytic domain
111111118Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
2259151418541756255F-box domain
111111118Elongation factor 1 gamma, conserved domain
22223314Calpain family cysteine protease
21232212Copper fist DNA binding domain
86124457551CRAL/TRIO domain
1311103228113417156BTB/POZ domain
1124Ricin-type beta-trefoil lectin domain
2111229Inhibitor of Apoptosis domain
6464444436Voltage gated chloride channel
2443432325Caspase domain
3653113738GDSL-like Lipase/Acylhydrolase
211111119Poly-adenylate binding protein, unique domain
112POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
1413161512141316113ABC transporter transmembrane region
81514Integrase core domain
4444456536FAD binding domain
625155181263Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
1212212213ribosomal L5P family C-terminus
8595666550Insulinase (Peptidase family M16)
6363333330Dehydrogenase E1 component
111111118Lumazine binding domain
9684666651Elongation factor G C-terminus
3435554433HMGL-like
2424444428DnaJ central domain
112Sulfotransferase domain
5151111116Starch binding domain
3243323222Ribosomal protein L1p/L10e family
5547555642Cation transporting ATPase, C-terminus
65687610755Cation transporter/ATPase, N-terminus
11111218dUTPase
3425444430Aconitase C-terminal domain
9393434439Amino acid kinase family
1121211110N-(5'phosphoribosyl)anthranilate (PRA) isomerase
2942143396427227Acyl transferase domain
1111116Urease beta subunit
2122162319Dihydrodipicolinate synthetase family
3230141314281428173haloacid dehalogenase-like hydrolase
235131318Glycosyl hydrolases family 2
182711810653Glycosyl hydrolases family 18
211111119Proliferating cell nuclear antigen, N-terminal domain
221218Translation initiation factor IF-3, C-terminal domain
12112119Acylphosphatase
111111118Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
4232333222Peptidase S24-like
4131111113Inorganic pyrophosphatase
81869111154Glycosyl hydrolases family 16
13121