PFAM Domains • Laccaria amethystina LaAM-08-1 v2.0
Annotations/GenomesAmamu1Corgl3Hebcy2Lacam1Lacam2Lacbi2Trima3TotalAnnotation Description
PFAMs
7,8558,1797,6757,9307,7938,6567,49955,587
117 transmembrane receptor (rhodopsin family)
43434539393944292ATPase family associated with various cellular activities (AAA)
35514445434946313ABC transporter
444554531ATP synthase alpha/beta family, nucleotide-binding domain
1214EGF-like domain
17161817171615116Elongation factor Tu GTP binding domain
1411121314201296Helix-loop-helix DNA-binding domain
141078810562Hsp20/alpha crystallin family
9912131315980Hsp70 protein
9127998761KH domain
11111117SH2 domain
26322832324027217SH3 domain
1113111616151294Actin
45463148279560352Ankyrin repeat
788999858ADP-ribosylation factor family
31231525252415158Eukaryotic aspartyl protease
333333321Cyclic nucleotide-binding domain
1113Cytochrome b(C-terminal)/b6/petD
224Cytochrome b/b6/petB
11111117Cytochrome c
1488141411877Double-stranded RNA binding motif
22171919191815129EF hand
111112184Fe-4S binding domain
1111116Fibronectin type III domain
1915599131888Glutathione S-transferase, C-terminal domain
21210125133Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
246Hemopexin
8891111101572Homeodomain
112Laminin EGF domain
222222214lactate/malate dehydrogenase, NAD binding domain
555667539Myosin head (motor domain)
12517189868786103747Cytochrome P450
1621652061911932171501,284Protein kinase domain
20151712121411101Pyridine nucleotide-disulphide oxidoreductase
43252937375328252Ras family
987777853Response regulator receiver domain
6195115854RNase H
70696579837171508RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
22711Reverse transcriptase (RNA-dependent DNA polymerase)
1211117Copper/zinc superoxide dismutase (SODC)
322333218Iron/manganese superoxide dismutases, alpha-hairpin domain
12612555348Subtilase family
27262223232126168Sugar (and other) transporter
91110111110971Thioredoxin
659556541Tubulin/FtsZ family, GTPase domain
1365446644von Willebrand factor type A domain
80715875666349462Zinc finger, C2H2 type
60595668676655431Zinc finger, C3HC4 type (RING finger)
513220291134177Zinc knuckle
232222215Protein-tyrosine phosphatase
48594851514954360short chain dehydrogenase
28292525263130194Zinc-binding dehydrogenase
455444430Thiolase, N-terminal domain
494555234Beta-ketoacyl synthase, N-terminal domain
3334473272Fe-2S iron-sulfur cluster binding domain
33Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
11215Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
71078813861Glutamine amidotransferase class-I
111011121213978TCP-1/cpn60 chaperonin family
111115ATP synthase A chain
344337327Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
11161413132017104E1-E2 ATPase
19151627252423149Core histone H2A/H2B/H3/H4
112239Copper binding proteins, plastocyanin/azurin family
558779647Alpha amylase, catalytic domain
554666638Phorbol esters/diacylglycerol binding domain (C1 domain)
455444632Bacterial transferase hexapeptide (six repeats)
333333321tRNA synthetases class I (I, L, M and V)
1010111414141184Cyclin, N-terminal domain
121516141415793Carboxylesterase family
44444424DNA polymerase family B
343334323ATP synthase subunit C
2168333237Peroxidase
47442122Beta-lactamase
344444326C-5 cytosine-specific DNA methylase
1113NADH dehydrogenase
27273132333330213Calcineurin-like phosphoesterase
81010999863Cellulase (glycosyl hydrolase family 5)
856555539tRNA synthetases class II (D, K and N)
38403737374137267Mitochondrial carrier protein
1712141415121397Aminotransferase class I and II
676778748Phosphoribosyl transferase domain
1312121212131286Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222223215Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
11211118Chaperonin 10 Kd subunit
14241714141817118C2 domain
16201623222420141PH domain
686667645bZIP transcription factor
13211215151520111Aldehyde dehydrogenase family
58616677797373487Fungal Zn(2)-Cys(6) binuclear cluster domain
20222422222324157Cytochrome b5-like Heme/Steroid binding domain
24333116Oxidoreductase molybdopterin binding domain
788888653Oxidoreductase NAD-binding domain
23232725242223167SNF2 family N-terminal domain
222223215Ribosomal protein S7p/S5e
21242322222321156Ubiquitin-conjugating enzyme
585666642Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
222222214Hsp90 protein
222232215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
112Chitin recognition protein
11512109139Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
151221113Cupin
1111217Annexin
22812Eukaryotic-type carbonic anhydrase
4333333222-oxoacid dehydrogenases acyltransferase (catalytic domain)
242111213Catalase
11111117Disintegrin
226414UDP-glucoronosyl and UDP-glucosyl transferase
555666538Aminotransferase class-III
322224217Ribosomal protein S19
11111117DNA gyrase B
243223319Thiamine pyrophosphate enzyme, central domain
343444325Lyase
112333215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112221110Adenylate and Guanylate cyclase catalytic domain
21111118ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
311222213Indole-3-glycerol phosphate synthase
234222217Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
9991010101067Kinesin motor domain
31383232323630231DnaJ domain
1414141414141599Proteasome subunit
576667744Major intrinsic protein
11111117ATP synthase
2327Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
212111412Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
18181626282122149Ubiquitin family
455555534Cofilin/tropomyosin-type actin-binding protein
21111131014-3-3 protein
22222212Alkaline phosphatase
1111116Zinc carboxypeptidase
25362525262433194Aldo/keto reductase family
1513121414141597Myb-like DNA-binding domain
544555533Forkhead domain
11111117Ribosomal protein L16p/L10e
222222214Ribosomal protein S14p/S29e
333556530FKBP-type peptidyl-prolyl cis-trans isomerase
11122119Glutathione peroxidase
121222111
975445438Flavodoxin
11111117Calreticulin family
28322320Common central domain of tyrosinase
677666947Aminotransferase class-V
222871224Ribonucleotide reductase, small chain
76705259668062465DEAD/DEAH box helicase
106106919293115103706Helicase conserved C-terminal domain
11114Fructose-bisphosphate aldolase class-I
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222332216Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211118Ribosomal protein L5
585554335Pyridoxal-dependent decarboxylase conserved domain
333333321Citrate synthase, C-terminal domain
556556537GHMP kinases N terminal domain
566556639Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
877877751Pyridoxal-phosphate dependent enzyme
15161814141415106NUDIX domain
556445433pfkB family carbohydrate kinase
32336219Glycosyl hydrolases family 28
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
19119777868Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
12216Lipoxygenase
444444529ATP synthase alpha/beta chain, C terminal domain
564445432Calponin homology (CH) domain
565555839Glutamine amidotransferases class-II
222222214Ribosomal protein S15
313223115Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
12111118Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
252343524SRF-type transcription factor (DNA-binding and dimerisation domain)
101391212121078GATA zinc finger
21211824242319150Amino acid permease
11Bacterial regulatory proteins, crp family
466558640Prolyl oligopeptidase family
11111117Ribosomal protein L30p/L7e
767998652Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444558434Aconitase family (aconitate hydratase)
213Glycosyl hydrolase family 10
233323319Glycosyl hydrolases family 17
322222215Ribosomal protein S5, N-terminal domain
212222213Nucleoside diphosphate kinase
312333318Tetraspanin family
1552114Galactoside-binding lectin
322222114Ribosomal protein S10p/S20e
236448229Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111128Carbohydrate phosphorylase
11111117SecY translocase
111225113Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
775668544Polyprenyl synthetase
224222216Hexokinase
677888751Dynamin family
122112110Transcription factor TFIID (or TATA-binding protein, TBP)
454445430Rieske [2Fe-2S] domain
333110Proton-conducting membrane transporter
9998881061Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
111222110Hydroxymethylglutaryl-coenzyme A reductase
333332320FGGY family of carbohydrate kinases, N-terminal domain
788888956Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
323223217Transcription factor TFIIB repeat
867777648Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
15157982169144Chromo (CHRromatin Organisation MOdifier) domain
473554230Phosphatidylinositol-specific phospholipase C, Y domain
473554230Phosphatidylinositol-specific phospholipase C, X domain
366444734D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
334456227Malic enzyme, N-terminal domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
198399131778Multicopper oxidase
7910888959WW domain
222222214Ribosomal RNA adenine dimethylase
3351811422212312211381,469WD domain, G-beta repeat
543443528Heavy-metal-associated domain
333333321Adenylate kinase
221222213Phosphoglucomutase/phosphomannomutase, C-terminal domain
11111117Ribosomal protein S8
222222214Ribosomal protein S11
667667644LIM domain
366419Matrixin
433333322Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
123NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222222214chorismate binding enzyme
34344432560s Acidic ribosomal protein
446446432Prenyltransferase and squalene oxidase repeat
765666743Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
1010101111101072Bromodomain
8898881160Acyl-CoA dehydrogenase, C-terminal domain
15141419201614112Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
44333320Ribonuclease T2 family
1096554443HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111128Urease alpha-subunit, N-terminal domain
129106771061Serine carboxypeptidase
889888857Phosphatidylinositol 3- and 4-kinase
123222214Transketolase, thiamine diphosphate binding domain
11111117WHEP-TRS domain
622442222Inositol monophosphatase family
555555737Glutaredoxin
354222422Isocitrate lyase family
31111119Serine hydroxymethyltransferase
222222214Iron-containing alcohol dehydrogenase
222222113Ribosomal protein L10
5559108547KOW motif
11111117Ribosomal protein L34
232112213RF-1 domain
221222314Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
12111118Glucose-6-phosphate dehydrogenase, NAD binding domain
10131012129975Protein phosphatase 2C
313333319Nucleotidyl transferase
237447330Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
910119981268Fatty acid desaturase
666666844MutS domain V
11111117Delta-aminolevulinic acid dehydratase
335222421Arginase family
696666847MCM P-loop domain
11111229Squalene/phytoene synthase
898111111967FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
27312518202930180AMP-binding enzyme
12141717184915142G-protein alpha subunit
18171318191616117HMG (high mobility group) box
1113NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11114Cytochrome c oxidase subunit III
374444531His Kinase A (phospho-acceptor) domain
343222420Armadillo/beta-catenin-like repeat
293038109517332362Tetratricopeptide repeat
333222318Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
112VPR/VPX protein
1110111111121278BRCA1 C Terminus (BRCT) domain
686667746Glycosyl transferases group 1
436333325Glycosyl transferase family 2
134111213SAM domain (Sterile alpha motif)
244444426linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
12238ribonuclease
11111128Urease, gamma subunit
433333322CoA-ligase
488665643Phosphopantetheine attachment site
222332216Formyl transferase
99910109864Metallopeptidase family M24
14141317171613104Leucine Rich Repeat
33443124252030207alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
565557538PB1 domain
222222214Staphylococcal nuclease homologue
211110101011982Rab-GTPase-TBC domain
11111117Tudor domain
121112210WH1 domain
333444526Zinc finger, ZZ type
1111116HRDC domain
91010999965CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
455334327S1 RNA binding domain
11111117HIUase/Transthyretin family
454444429AhpC/TSA family
444774535tRNA synthetases class I (W and Y)
11111117UvrD/REP helicase N-terminal domain
444444327Rhodanese-like domain
222342217Universal stress protein family
22293120202825175Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
232222215AIR synthase related protein, N-terminal domain
696666746tRNA synthetase class II core domain (G, H, P, S and T)
42219Phage integrase family
222225318Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
112111310Class II Aldolase and Adducin N-terminal domain
444443629Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
568778647Fes/CIP4, and EFC/F-BAR homology domain
244445225IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
353444427Phospholipase D Active site motif
11111117Regulator of G protein signaling domain
474444431GTPase-activator protein for Ras-like GTPase
579887650RasGEF domain
678998754RasGEF N-terminal motif
1314151313131293RhoGAP domain
15141316161614104RhoGEF domain
444444428SPRY domain
333353323RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
344444326Gelsolin repeat
1013998101069UBA/TS-N domain
15252519191827148PHD-finger
12115GGL domain
5765551144HECT-domain (ubiquitin-transferase)
111222110Helix-hairpin-helix motif
111222110MSP (Major sperm protein) domain
7119997658Ribonuclease III domain
222222214Region in Clathrin and VPS
334443425RanBP1 domain
222222315PPIC-type PPIASE domain
343225423Zn-finger in Ran binding protein and others
26232529293025187Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111117B-box zinc finger
3107554438Poly(ADP-ribose) polymerase catalytic domain
321222214Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
14713020614815015660997F-box domain
421112213Elongation factor 1 gamma, conserved domain
1215668350Calpain family cysteine protease
223222215Copper fist DNA binding domain
1176666749CRAL/TRIO domain
1419201515175105BTB/POZ domain
510118811659Ricin-type beta-trefoil lectin domain
12111118Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
32516171717398Caspase domain
255222523GDSL-like Lipase/Acylhydrolase
222222113Poly-adenylate binding protein, unique domain
111223111POLO box duplicated region
112NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
18261917161818132ABC transporter transmembrane region
512614Integrase core domain
333333321FAD binding domain
142441218Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
2161111123HAMP domain
222222214ribosomal L5P family C-terminus
555555535Insulinase (Peptidase family M16)
644445532Dehydrogenase E1 component
11111117Lumazine binding domain
1189111110767Elongation factor G C-terminus
444444529HMGL-like
444444428DnaJ central domain
144111113Starch binding domain
243222217Ribosomal protein L1p/L10e family
378555841Cation transporting ATPase, C-terminus
510108814964Cation transporter/ATPase, N-terminus
111222110dUTPase
444555431Aconitase C-terminal domain
343885334Amino acid kinase family
111222211N-(5'phosphoribosyl)anthranilate (PRA) isomerase
385444230Acyl transferase domain
11111128Urease beta subunit
122111210Dihydrodipicolinate synthetase family
26312927262831198haloacid dehalogenase-like hydrolase
1111116Glycosyl hydrolases family 2
139111010111175Glycosyl hydrolases family 18
21111118Proliferating cell nuclear antigen, N-terminal domain
111222110Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
334334222Peptidase S24-like
11111117Inorganic pyrophosphatase
456554433Glycosyl hydrolases family 16
244222218Glycosyl hydrolases family 15
965889752NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
312111211Glycosyl hydrolase family 20, catalytic domain
554555534HhH-GPD superfamily base excision DNA repair protein
13111119AIR carboxylase
10321817171217123GMC oxidoreductase
232222518Asparagine synthase
2211118Fungal cellulose binding domain
887777751Septin
11111117EF-1 guanine nucleotide exchange domain
22111119Homoserine dehydrogenase
412223317Flavin-binding monooxygenase-like
433333423tRNA synthetases class I (E and Q), catalytic domain
11111218tRNA synthetases class I (R)
6651111171066XPG N-terminal domain
89810109862Metallo-beta-lactamase superfamily
11114F5/8 type C domain
464444632Choline/Carnitine o-acyltransferase
11111117Putative esterase
11Furin-like cysteine rich region
11111117Glycosyl hydrolase family 9
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111218Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
222222214Dioxygenase
554555534CNH domain
222222214Diacylglycerol kinase catalytic domain
1411131313161898Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
465666538P21-Rho-binding domain
1215161212141596PX domain
445443428Ras association (RalGDS/AF-6) domain
444446430UBX domain
565666539VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
333333321Carbon-nitrogen hydrolase
44N-acetyltransferase
1113Geminivirus Rep catalytic domain
11111117Prephenate dehydratase
444554531Syntaxin
555555535Pumilio-family RNA binding repeat
567676643Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111218Pterin binding enzyme
21111118ER lumen protein retaining receptor
222222214Glycoprotease family
11111117Histidinol dehydrogenase
333333321impB/mucB/samB family
11111128
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
1111116Ribosomal L39 protein
11111117Ribosomal S17
11211118Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
134Glycosyl hydrolase family 7
222222214RNA pseudouridylate synthase
577667644Histone deacetylase domain
122224215POT family
222226218PWWP domain
15201820202921143SET domain
266222424Isochorismatase family
322222518Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
991015153822118XPG I-region
112Acetokinase family
11114DNA photolyase
1111217Cation-independent mannose-6-phosphate receptor repeat
121224113Cytosol aminopeptidase family, catalytic domain
11111117Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
333233320Acyl CoA binding protein
677779548Cullin family
1111