PFAM Domains • Wickerhamiella domercqiae NRRL Y-6692 v1.0
Annotations/GenomesArxad1Sugame1Symat1Tripe1Wicdo1Zyghe1_2TotalAnnotation Description
PFAMs
5,9126,9515,7405,5095,5015,35734,970
333234333333198ATPase family associated with various cellular activities (AAA)
262529332523161ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
13131313141379Elongation factor Tu GTP binding domain
88884844Helix-loop-helix DNA-binding domain
5122111Hsp20/alpha crystallin family
77777742Hsp70 protein
85783940KH domain
11114SH2 domain
21920211319103SH3 domain
10111011101062Actin
17117161263Ankyrin repeat
112PAN domain
76779743ADP-ribosylation factor family
242028221519128Eukaryotic aspartyl protease
43442421Cyclic nucleotide-binding domain
1111116Cytochrome c
21221210Double-stranded RNA binding motif
16117161464EF hand
211154Fe-4S binding domain
32221212Fibronectin type III domain
32221313Globin
105234327Glutathione S-transferase, C-terminal domain
1211128Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
55773431Homeodomain
22222212lactate/malate dehydrogenase, NAD binding domain
55435527Myosin head (motor domain)
131310124658Cytochrome P450
878682837481493Protein kinase domain
98897748Pyridine nucleotide-disulphide oxidoreductase
252527271723144Ras family
87886744Response regulator receiver domain
1541112RNase H
585760612557318RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
213Reverse transcriptase (RNA-dependent DNA polymerase)
2111117Copper/zinc superoxide dismutase (SODC)
2122119Iron/manganese superoxide dismutases, alpha-hairpin domain
55554529Subtilase family
614166391828253Sugar (and other) transporter
99878849Thioredoxin
11215Trypsin
44444424Tubulin/FtsZ family, GTPase domain
12115von Willebrand factor type A domain
381834341238174Zinc finger, C2H2 type
3523436431142Zinc finger, C3HC4 type (RING finger)
82541525Zinc knuckle
22222212Protein-tyrosine phosphatase
515039332238233short chain dehydrogenase
252726141118121Zinc-binding dehydrogenase
54332320Thiolase, N-terminal domain
22222212Beta-ketoacyl synthase, N-terminal domain
424423192Fe-2S iron-sulfur cluster binding domain
1111329Enolase, C-terminal TIM barrel domain
88888848Glutamine amidotransferase class-I
109109101058TCP-1/cpn60 chaperonin family
22221211Glutamine synthetase, catalytic domain
2221119Triosephosphate isomerase
11151111141173E1-E2 ATPase
87986543Core histone H2A/H2B/H3/H4
11Bacterial regulatory helix-turn-helix protein, lysR family
31421112Alpha amylase, catalytic domain
111115Phorbol esters/diacylglycerol binding domain (C1 domain)
55543527Bacterial transferase hexapeptide (six repeats)
35335322tRNA synthetases class I (I, L, M and V)
1010899955Cyclin, N-terminal domain
77821429Carboxylesterase family
44444424DNA polymerase family B
33433319ATP synthase subunit C
22222212Peroxidase
2125Beta-lactamase
222520221819126Calcineurin-like phosphoesterase
46423524Cellulase (glycosyl hydrolase family 5)
65666635tRNA synthetases class II (D, K and N)
383838363533218Mitochondrial carrier protein
11recA bacterial DNA recombination protein
13141113111375Aminotransferase class I and II
73994840Phosphoribosyl transferase domain
1211131241062Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
22311110Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
99785846C2 domain
1814181781893PH domain
91010107753bZIP transcription factor
15131110121071Aldehyde dehydrogenase family
946876672779411Fungal Zn(2)-Cys(6) binuclear cluster domain
15141515171490Cytochrome b5-like Heme/Steroid binding domain
112Oxidoreductase molybdopterin binding domain
86977744Oxidoreductase NAD-binding domain
181818181818108SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
14161616121387Ubiquitin-conjugating enzyme
56655532Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22212211Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111115Dihydrofolate reductase
1111116Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
124310Cupin
112Eukaryotic-type carbonic anhydrase
333323172-oxoacid dehydrogenases acyltransferase (catalytic domain)
3121119Catalase
111115Disintegrin
11UDP-glucoronosyl and UDP-glucosyl transferase
44334422Aminotransferase class-III
22222212Ribosomal protein S19
1311118DNA gyrase B
54445426Thiamine pyrophosphate enzyme, central domain
33333318Lyase
22222212Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Adenylate and Guanylate cyclase catalytic domain
111115ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
1111116Pyruvate kinase, barrel domain
9910107853Kinesin motor domain
242423212123136DnaJ domain
14141414141383Proteasome subunit
1111217Major intrinsic protein
1111116ATP synthase
815519Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
1211229Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
10119981057Ubiquitin family
44433422Cofilin/tropomyosin-type actin-binding protein
2222221214-3-3 protein
1111127Alkaline phosphatase
111115Zinc carboxypeptidase
20222018913102Aldo/keto reductase family
148151671676Myb-like DNA-binding domain
33333318Forkhead domain
21115Glycosyl hydrolases family 32 N-terminal domain
1211218Ribosomal protein L16p/L10e
22222212Ribosomal protein S14p/S29e
32333317FKBP-type peptidyl-prolyl cis-trans isomerase
1111217Glutathione peroxidase
11114
65574633Flavodoxin
1111116Calreticulin family
67656535Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
363832343734211DEAD/DEAH box helicase
625955575856347Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22221211Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2111229Ribosomal protein L5
34335422Pyridoxal-dependent decarboxylase conserved domain
23223214Citrate synthase, C-terminal domain
55555530GHMP kinases N terminal domain
66666636Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
88889950Pyridoxal-phosphate dependent enzyme
101010910958NUDIX domain
44444424pfkB family carbohydrate kinase
1113Glycosyl hydrolases family 28
22Luciferase-like monooxygenase
22222212Ribosomal protein L3
22222111Ribosomal protein L11, RNA binding domain
12121010121066Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
44444424ATP synthase alpha/beta chain, C terminal domain
55554529Calponin homology (CH) domain
53553526Glutamine amidotransferases class-II
22222212Ribosomal protein S15
1111116Fructose-1-6-bisphosphatase, N-terminal domain
22222212Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22222212SRF-type transcription factor (DNA-binding and dimerisation domain)
99697848GATA zinc finger
23142016923105Amino acid permease
1121117Prolyl oligopeptidase family
23222213Ribosomal protein L30p/L7e
85874537Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
45444425Aconitase family (aconitate hydratase)
44Glycosyl hydrolase family 10
23231314Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
22222212Ribosomal protein S10p/S20e
48438330Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
22222212SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
33222315Ribosomal protein L6
33333318Polyprenyl synthetase
33332317Hexokinase
45445426Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
21411110Rieske [2Fe-2S] domain
88887847Biotin-requiring enzyme
1111116Phosphofructokinase
22222212Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
33333318FGGY family of carbohydrate kinases, N-terminal domain
77665738Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
76867539Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
22222212Chromo (CHRromatin Organisation MOdifier) domain
1111116Phosphatidylinositol-specific phospholipase C, Y domain
1311118Phosphatidylinositol-specific phospholipase C, X domain
57545632D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
11215Malic enzyme, N-terminal domain
11111166-phosphogluconate dehydrogenase, C-terminal domain
42333318Multicopper oxidase
57644632WW domain
22222212Ribosomal RNA adenine dimethylase
999910510278100583WD domain, G-beta repeat
44344423Heavy-metal-associated domain
43442320Adenylate kinase
33323317Phosphoglucomutase/phosphomannomutase, C-terminal domain
1211218Ribosomal protein S8
1211218Ribosomal protein S11
34442320LIM domain
13212110Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
22222212chorismate binding enzyme
4444442460s Acidic ribosomal protein
44444424Prenyltransferase and squalene oxidase repeat
63543627Protein kinase C terminal domain
11Spectrin repeat
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
98998952Bromodomain
710766541Acyl-CoA dehydrogenase, C-terminal domain
14151414121483Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
1122118Ribonuclease T2 family
33443320HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
58976742Serine carboxypeptidase
88887847Phosphatidylinositol 3- and 4-kinase
32211110Transketolase, thiamine diphosphate binding domain
22222212Inositol monophosphatase family
66665635Glutaredoxin
22332315Isocitrate lyase family
22223213Serine hydroxymethyltransferase
211116Iron-containing alcohol dehydrogenase
23223214Ribosomal protein L10
63353424KOW motif
1111116Ribosomal protein L34
23323316RF-1 domain
22222515Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
66666636Protein phosphatase 2C
34334320Nucleotidyl transferase
1111116Carbonic anhydrase
33222214Phosphoribulokinase / Uridine kinase family
44443423Fatty acid desaturase
44464426MutS domain V
1111116Delta-aminolevulinic acid dehydratase
42222416Arginase family
66666636MCM P-loop domain
1211218Squalene/phytoene synthase
686105540FHA domain
1413131271271AMP-binding enzyme
22221211G-protein alpha subunit
54874533HMG (high mobility group) box
11Cytochrome c oxidase subunit III
54554528His Kinase A (phospho-acceptor) domain
22442216Armadillo/beta-catenin-like repeat
2315181861696Tetratricopeptide repeat
51531419Ion transport protein
1311118DNA gyrase/topoisomerase IV, subunit A
961098951BRCA1 C Terminus (BRCT) domain
43443422Glycosyl transferases group 1
32222213Glycosyl transferase family 2
111126SAM domain (Sterile alpha motif)
111115linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
33333318CoA-ligase
33333318Phosphopantetheine attachment site
22222212Formyl transferase
88989749Metallopeptidase family M24
103101021146Leucine Rich Repeat
245141741579alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
2322211PB1 domain
22222212Staphylococcal nuclease homologue
101110991059Rab-GTPase-TBC domain
1111116Tudor domain
1111116WH1 domain
33321416Zinc finger, ZZ type
1111116HRDC domain
1179107953CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
43343421S1 RNA binding domain
1111116HIUase/Transthyretin family
44334321AhpC/TSA family
44544425tRNA synthetases class I (W and Y)
2211129UvrD/REP helicase N-terminal domain
57546532Rhodanese-like domain
2222210Universal stress protein family
222120171321114Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
87887846tRNA synthetase class II core domain (G, H, P, S and T)
22222212SpoU rRNA Methylase family
22211210Tetrapyrrole (Corrin/Porphyrin) Methylases
1111217Glycosyl transferase family, a/b domain
21216PDZ domain
22222212Class II Aldolase and Adducin N-terminal domain
25433421Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
65565532Fes/CIP4, and EFC/F-BAR homology domain
32211312IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
21221210Phospholipase D Active site motif
231118Regulator of G protein signaling domain
34443422GTPase-activator protein for Ras-like GTPase
45444425RasGEF domain
43443422RasGEF N-terminal motif
1110111081060RhoGAP domain
44345424RhoGEF domain
33442420SPRY domain
34333319RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
44342320Gelsolin repeat
84874536UBA/TS-N domain
1511141581578PHD-finger
11GGL domain
66655634HECT-domain (ubiquitin-transferase)
111115Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
2132311Ribonuclease III domain
25223216Region in Clathrin and VPS
32333317RanBP1 domain
1111116PPIC-type PPIASE domain
111115Zn-finger in Ran binding protein and others
128121281062Zinc finger C-x8-C-x5-C-x3-H type (and similar)
112B-box zinc finger
3920627616213F-box domain
1111116Elongation factor 1 gamma, conserved domain
111115Calpain family cysteine protease
22222212Copper fist DNA binding domain
46444426CRAL/TRIO domain
424414BTB/POZ domain
112Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
33332317Voltage gated chloride channel
1111116Caspase domain
14229GDSL-like Lipase/Acylhydrolase
22222212Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
8111316141072ABC transporter transmembrane region
11Integrase core domain
33334319FAD binding domain
1113Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222212ribosomal L5P family C-terminus
66555633Insulinase (Peptidase family M16)
43332318Dehydrogenase E1 component
1111116Lumazine binding domain
76766638Elongation factor G C-terminus
44444424HMGL-like
44444424DnaJ central domain
24224216Ribosomal protein L1p/L10e family
54553527Cation transporting ATPase, C-terminus
76675738Cation transporter/ATPase, N-terminus
11114dUTPase
45444425Aconitase C-terminal domain
33333318Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
22122110Acyl transferase domain
2211129Dihydrodipicolinate synthetase family
261225251021119haloacid dehalogenase-like hydrolase
3333214Glycosyl hydrolases family 2
444102428Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
1111116Adenylosuccinate synthetase
33333217Peptidase S24-like
22221211Inorganic pyrophosphatase
34342319Glycosyl hydrolases family 16
2111117Glycosyl hydrolases family 15
831041430NADH:flavin oxidoreductase / NADH oxidase family
11113183-hydroxyacyl-CoA dehydrogenase, C-terminal domain
2145113Glycosyl hydrolase family 20, catalytic domain
33333318HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
21213110GMC oxidoreductase
22222212Asparagine synthase
78778744Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
2423213Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
34334320XPG N-terminal domain
53444323Metallo-beta-lactamase superfamily
112F5/8 type C domain
22321212Choline/Carnitine o-acyltransferase
1111116Putative esterase
1111116Ferrochelatase
33333318Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
44443423RNB domain
426Dioxygenase
33322215CNH domain
12222110Diacylglycerol kinase catalytic domain
77775639Dual specificity phosphatase, catalytic domain
22322314P21-Rho-binding domain
13121214111375PX domain
3123211Ras association (RalGDS/AF-6) domain
65644530UBX domain
44444424VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
44445627Carbon-nitrogen hydrolase
1111116Prephenate dehydratase
33333318Syntaxin
44554628Pumilio-family RNA binding repeat
76766537Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
1111116ER lumen protein retaining receptor
22222212Glycoprotease family
1111116Histidinol dehydrogenase
33333318impB/mucB/samB family
11114
1111116Ribosomal L15
13113110Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
112Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
111115Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
23321213RNA pseudouridylate synthase
55654429Histone deacetylase domain
2243112POT family
111216PWWP domain
12128114754SET domain
33222214Isochorismatase family
1111217Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
44445425XPG I-region
1113DNA photolyase
11Cation-independent mannose-6-phosphate receptor repeat
11Nitroreductase family
112Zinc dependent phospholipase C
41511113Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
22222111Acyl CoA binding protein
44443423Cullin family
52111111FAD binding domain
22O-methyltransferase domain
12324416EamA-like transporter family
22228
88888848ThiF family
1111116Ribosomal family S4e
22232314Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
24214316Ammonium Transporter Family
33333318Sulfate permease family
1146113MATH domain
31221110Dehydratase family
21321110Transaldolase/Fructose-6-phosphate aldolase
1111116Mechanosensitive ion channel
12221210GTP cyclohydrolase II
11111273,4-dihydroxy-2-butanone 4-phosphate synthase
55555530Adaptor complexes medium subunit family
56656533Exonuclease
1111116Dipeptidyl peptidase IV (DPP IV) N-terminal region
22NB-ARC domain
86107738Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
112Sodium:sulfate symporter transmembrane region
22222111DNA-dependent RNA polymerase
111115FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
44444424Synaptobrevin
1111116GMP synthase C terminal domain
11LAGLIDADG endonuclease
22212211Adenosine/AMP deaminase
54555529Oxidoreductase FAD-binding domain
22222212Histidine biosynthesis protein
33333318Glycosyltransferase family 20
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
2114PAS fold
2211219Probable molybdopterin binding domain
46444426Sec1 family
22222212GDP dissociation inhibitor
44443322Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
44444424Initiation factor 2 subunit family
22222212Electron transfer flavoprotein domain
111115Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
22222212Gamma-glutamyltranspeptidase
11114Ribosomal L40e family
111115GrpE
22222212TatD related DNase
1111116Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
34333319Dynamin central region
1221176-O-methylguanine DNA methyltransferase, DNA binding domain
111216Bacteriorhodopsin-like protein
22221211Carboxyl transferase domain
22222212UbiA prenyltransferase family
53333623Endoribonuclease L-PSP
224Phosphorylase superfamily
56655633Cys/Met metabolism PLP-dependent enzyme
41631318Glycosyl hydrolases family 31
1111116NADH ubiquinone oxidoreductase, 20 Kd subunit
85682433ABC-2 type transporter
23233215Amino-transferase class IV
55555530CDP-alcohol phosphatidyltransferase
11Calpain large subunit, domain III
22322213ATP dependent DNA ligase domain
44435323FMN-dependent dehydrogenase
1111116Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
12112183-beta hydroxysteroid dehydrogenase/isomerase family
22231212Glycosyl hydrolases family 38 N-terminal domain
2111218Nitrite and sulphite reductase 4Fe-4S domain
33Cutinase
1111116Ribosomal protein S18
1111116Clathrin light chain
1111116Galactose-1-phosphate uridyl transferase, N-terminal domain
21222211Ubiquitin carboxyl-terminal hydrolase, family 1
1111116Ribosomal protein S19e
1111116Ribosomal protein S6e
44444424Transcription factor S-II (TFIIS)
22122211Surface antigen
44444424emp24/gp25L/p24 family/GOLD
1111