PFAM Domains • Tothia fuscella CBS 130266 v1.0
Annotations/GenomesAplpr1Aulhe2Botdo1Leppa1Macph1Neopa1Patat1Sacpr1Totfu1Tryvi1Zoprh1TotalAnnotation Description
PFAMs
8,1987,78610,7799,0789,4228,5057,1837,3238,5218,54011,89297,227
22157 transmembrane receptor (rhodopsin family)
5244635450464539546594606ATPase family associated with various cellular activities (AAA)
4237574654443533472962486ABC transporter
4444544444546ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
1414141514141314141413153Elongation factor Tu GTP binding domain
109121316791010816120Helix-loop-helix DNA-binding domain
2233432262433Hsp20/alpha crystallin family
7777777797880Hsp70 protein
89999989108896KH domain
1111111111111SH2 domain
2323222121182122242226243SH3 domain
10101010119910101012111Actin
1025013417962313521511293801,174Ankyrin repeat
1162532142238PAN domain
77710677787881ADP-ribosylation factor family
121017122018816211519168Eukaryotic aspartyl protease
4444334444442Cyclic nucleotide-binding domain
1113Cytochrome b(C-terminal)/b6/petD
1113Cytochrome b/b6/petB
1111111111111Cytochrome c
1212323222222Double-stranded RNA binding motif
2017212019202019211619212EF hand
11212211111144Fe-4S binding domain
1221122222219Fibronectin type III domain
111111118Globin
141421121716611102018159Glutathione S-transferase, C-terminal domain
1111121111112Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
65139957789886Homeodomain
2222222232425lactate/malate dehydrogenase, NAD binding domain
1111116Low-density lipoprotein receptor repeat class B
11Lectin C-type domain
4354554455448Myosin head (motor domain)
90602531452271995665641272221,508Cytochrome P450
106110138145106921311051291192271,408Protein kinase domain
1314181817211412192025191Pyridine nucleotide-disulphide oxidoreductase
2323243322202222312335278Ras family
1823262122111519311316215Response regulator receiver domain
4382204826562RNase H
6663626158545959616259664RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
57113Reverse transcriptase (RNA-dependent DNA polymerase)
2222222233224Copper/zinc superoxide dismutase (SODC)
2222212222221Iron/manganese superoxide dismutases, alpha-hairpin domain
5141610111147152421138Subtilase family
563811050919935504250102723Sugar (and other) transporter
910911991010131014114Thioredoxin
1222111111114Trypsin
4454554444447Tubulin/FtsZ family, GTPase domain
4355323254844von Willebrand factor type A domain
58516873534151536250111671Zinc finger, C2H2 type
5345535240304542594252513Zinc finger, C3HC4 type (RING finger)
67931611535873Zinc knuckle
2222212222221Protein-tyrosine phosphatase
12212920016416715888971371431891,594short chain dehydrogenase
565711074948936486773102806Zinc-binding dehydrogenase
5565665565660Thiolase, N-terminal domain
207362444298894147273Beta-ketoacyl synthase, N-terminal domain
65666455447582Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
1112111111112Enolase, C-terminal TIM barrel domain
314Cytochrome C and Quinol oxidase polypeptide I
213Cytochrome C oxidase subunit II, periplasmic domain
8899978988891Glutamine amidotransferase class-I
10101010101091010109108TCP-1/cpn60 chaperonin family
213ATP synthase A chain
2243323225432Glutamine synthetase, catalytic domain
2122222212220Triosephosphate isomerase
1413181519161312151224171E1-E2 ATPase
8879887811820102Core histone H2A/H2B/H3/H4
1113Copper binding proteins, plastocyanin/azurin family
488109854471683Alpha amylase, catalytic domain
2223222122222Phorbol esters/diacylglycerol binding domain (C1 domain)
7613710108778891Bacterial transferase hexapeptide (six repeats)
3433333344437tRNA synthetases class I (I, L, M and V)
7767657666871Cyclin, N-terminal domain
2435501947441023302650358Carboxylesterase family
444444444440DNA polymerase family B
5444443465447ATP synthase subunit C
76969944122775Peroxidase
104161213152421725129Beta-lactamase
343332343432C-5 cytosine-specific DNA methylase
11114NADH dehydrogenase
2330233124202121292928279Calcineurin-like phosphoesterase
111014711121511121419136Cellulase (glycosyl hydrolase family 5)
7777777778879tRNA synthetases class II (D, K and N)
3540384135383737403842421Mitochondrial carrier protein
111115recA bacterial DNA recombination protein
2014251518171515142022195Aminotransferase class I and II
9888888898991Phosphoribosyl transferase domain
1011101210101010121111117Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111211111112Phosphoglycerate kinase
2222222222323Ribosomal protein S4/S9 N-terminal domain
2222222222222Ribosomal protein S12/S23
11125Bacterial regulatory helix-turn-helix proteins, AraC family
1111111111111Chaperonin 10 Kd subunit
99111011101211111011115C2 domain
1818181920181918171719201PH domain
106179148878712106bZIP transcription factor
1917272723271513212227238Aldehyde dehydrogenase family
159137206165116102104951241622711,641Fungal Zn(2)-Cys(6) binuclear cluster domain
2021272921242023202123249Cytochrome b5-like Heme/Steroid binding domain
3462563435546Oxidoreductase molybdopterin binding domain
1513221317161315141018166Oxidoreductase NAD-binding domain
2627302727202225272834293SNF2 family N-terminal domain
2222222222222Ribosomal protein S7p/S5e
2225202320212323242325249Ubiquitin-conjugating enzyme
7677876668876Isocitrate/isopropylmalate dehydrogenase
2222222222222Ribosomal Proteins L2, RNA binding domain
111211111111Hsp90 protein
2222222222222Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111111212Dihydrofolate reductase
6587541362855Chitin recognition protein
3255562234441Cysteine-rich secretory protein family
1111111111111Ribosomal protein S3, C-terminal domain
1551441363740Cupin
2223222222324Annexin
2213222216Eukaryotic-type carbonic anhydrase
112Chalcone and stilbene synthases, N-terminal domain
33434433333362-oxoacid dehydrogenases acyltransferase (catalytic domain)
4746533464551Catalase
111111111110Disintegrin
113218UDP-glucoronosyl and UDP-glucosyl transferase
7596794575771Aminotransferase class-III
2222222222222Ribosomal protein S19
1111111111111DNA gyrase B
75887845610775Thiamine pyrophosphate enzyme, central domain
4353444334542Lyase
2222222222222Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1113Sodium:neurotransmitter symporter family
11Ferritin-like domain
1111111111111Adenylate and Guanylate cyclase catalytic domain
1111111111111ATP synthase delta (OSCP) subunit
2121221111115Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111111111Indole-3-glycerol phosphate synthase
111112112213Aromatic amino acid lyase
1111111111111Pyruvate kinase, barrel domain
101011121010109111011114Kinesin motor domain
2926263021242731362634310DnaJ domain
1514141414141414141414155Proteasome subunit
1091369949138797Major intrinsic protein
1111111111111ATP synthase
5163651321538Glycosyl hydrolase family 1
11111111111113'5'-cyclic nucleotide phosphodiesterase
1111111111111Profilin
1111212211114Ribosomal protein L22p/L17e
2212222222221Ribosomal protein L14p/L23e
91112151191111141316132Ubiquitin family
3434444454544Cofilin/tropomyosin-type actin-binding protein
222242222232514-3-3 protein
3553454353545Alkaline phosphatase
2243543132433Zinc carboxypeptidase
2127363139362120302945335Aldo/keto reductase family
1612171514111613101738179Myb-like DNA-binding domain
4444434455950Forkhead domain
414541111224Glycosyl hydrolases family 32 N-terminal domain
1111111111111Ribosomal protein L16p/L10e
3233112322527Ribosomal protein S14p/S29e
4544344464446FKBP-type peptidyl-prolyl cis-trans isomerase
1111111111111Glutathione peroxidase
2232221111118
77121271158671092Flavodoxin
1111111111111Calreticulin family
731261011123961594Common central domain of tyrosinase
77118887797887Aminotransferase class-V
1111111111111Ribonucleotide reductase, small chain
4141403938304139403742428DEAD/DEAH box helicase
7583837574657173827790848Helicase conserved C-terminal domain
1121211111113EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222222222Ribosomal protein L23
1131331211118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1121222112116Ribosomal protein L5
7675686657871Pyridoxal-dependent decarboxylase conserved domain
3234332323331Citrate synthase, C-terminal domain
5575455565557GHMP kinases N terminal domain
6696884777674Biotin carboxylase, N-terminal domain
1121221111114Tryptophan synthase alpha chain
12111410131010109910118Pyridoxal-phosphate dependent enzyme
141516151391512181515157NUDIX domain
4545435464852pfkB family carbohydrate kinase
969581015911780Glycosyl hydrolases family 28
1111116Luciferase-like monooxygenase
2222222222121Ribosomal protein L3
2222222222222Ribosomal protein L11, RNA binding domain
1213121311111112141520144Histidine phosphatase superfamily (branch 1)
1111111111111Thymidylate synthase
112Lipoxygenase
4444444444545ATP synthase alpha/beta chain, C terminal domain
4545545555552Calponin homology (CH) domain
5464565656456Glutamine amidotransferases class-II
2222222222222Ribosomal protein S15
1111111121112Thaumatin family
1111111111111Fructose-1-6-bisphosphatase, N-terminal domain
1111111111212Ribonucleotide reductase, all-alpha domain
2222222222222Ribosomal protein S2
2232222223325SRF-type transcription factor (DNA-binding and dimerisation domain)
9697726657872GATA zinc finger
3732575142472931403365464Amino acid permease
3552433364846Prolyl oligopeptidase family
2121122121217Ribosomal protein L30p/L7e
10111110101071191011110Histidine phosphatase superfamily (branch 2)
2111111111112Respiratory-chain NADH dehydrogenase, 30 Kd subunit
5464855444756Aconitase family (aconitate hydratase)
2161553224536Glycosyl hydrolase family 10
5466773545355Glycosyl hydrolases family 17
2222222222222Ribosomal protein S5, N-terminal domain
111111111110Nucleoside diphosphate kinase
111115Tetraspanin family
1211112122216Ribosomal protein S10p/S20e
5484654276556Arrestin (or S-antigen), N-terminal domain
1111111111111Phosphoglucose isomerase
1111111111111Carbohydrate phosphorylase
1111111111111SecY translocase
1111211111112Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222222222Ribosomal protein L6
43931074334353Polyprenyl synthetase
4454645434649Hexokinase
1049138675971997Dynamin family
1311113221117Transcription factor TFIID (or TATA-binding protein, TBP)
4364534463850Rieske [2Fe-2S] domain
1111111119Phytochrome region
4149Proton-conducting membrane transporter
88108887899891Biotin-requiring enzyme
1111111111111Phosphofructokinase
1212112112216Ribosomal protein S17
1121121111113Hydroxymethylglutaryl-coenzyme A reductase
3443443343338FGGY family of carbohydrate kinases, N-terminal domain
8111715121210815918135Enoyl-CoA hydratase/isomerase
2222212222221Ribosomal protein S9/S16
3222222222223Transcription factor TFIIB repeat
7897766898782Cytidine and deoxycytidylate deaminase zinc-binding region
1111111111111Molybdopterin oxidoreductase
64659354571367Chromo (CHRromatin Organisation MOdifier) domain
2223223232326Phosphatidylinositol-specific phospholipase C, Y domain
3233333342332Phosphatidylinositol-specific phospholipase C, X domain
881791113986814111D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2222222221221Malic enzyme, N-terminal domain
22444224223316-phosphogluconate dehydrogenase, C-terminal domain
91520152221913131918174Multicopper oxidase
11Granulin
1010111399911121011115WW domain
1111112111112Ribosomal RNA adenine dimethylase
113123134221Yeast PIR protein repeat
107111106176105841101021091072341,351WD domain, G-beta repeat
4575764465760Heavy-metal-associated domain
4365333333440Adenylate kinase
3222222222223Phosphoglucomutase/phosphomannomutase, C-terminal domain
4112111212218Ribosomal protein S8
1122221122218Ribosomal protein S11
4445334444544LIM domain
11111117Matrixin
212212233119Regulator of chromosome condensation (RCC1) repeat
2222221222221Ribosomal protein S13/S18
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2223212222323chorismate binding enzyme
333333333433460s Acidic ribosomal protein
4445445444446Prenyltransferase and squalene oxidase repeat
5566666556662Protein kinase C terminal domain
1111111111212Single-strand binding protein family
11Type II/IV secretion system protein
1111111111111S-adenosylmethionine synthetase, N-terminal domain
7778877799884Bromodomain
712161914131113131116145Acyl-CoA dehydrogenase, C-terminal domain
1514161516151315171514165Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
2232332343128Ribonuclease T2 family
4333333333334HSF-type DNA-binding
2222222222222SRP54-type protein, GTPase domain
1111111111111Urease alpha-subunit, N-terminal domain
91217101413912131613138Serine carboxypeptidase
8888888888888Phosphatidylinositol 3- and 4-kinase
2221221212623Transketolase, thiamine diphosphate binding domain
111135517Glycosyl hydrolases family 11
4455542453748Inositol monophosphatase family
4444444454445Glutaredoxin
6373772324448Isocitrate lyase family
2222222122221Serine hydroxymethyltransferase
4543443324440Iron-containing alcohol dehydrogenase
2122222212220Ribosomal protein L10
3642433214335KOW motif
11111117Ribosomal protein L34
2222123321222RF-1 domain
3564252352441Sodium:solute symporter family
1111111111111Imidazoleglycerol-phosphate dehydratase
111111111110DNA polymerase family A
1111111111111IMP dehydrogenase / GMP reductase domain
1111111111111Glucose-6-phosphate dehydrogenase, NAD binding domain
5666665665663Protein phosphatase 2C
3333333333333Nucleotidyl transferase
1334223173231Carbonic anhydrase
1111111111111Phosphoribulokinase / Uridine kinase family
54981184656672Fatty acid desaturase
6666566666766MutS domain V
1111111111111Delta-aminolevulinic acid dehydratase
5485644445453Arginase family
66613676666674MCM P-loop domain
2222222222222Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 3
8911785961191295FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
4129775575623542494875588AMP-binding enzyme
4334333348644G-protein alpha subunit
71081046881091090HMG (high mobility group) box
213NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1113Cytochrome c oxidase subunit III
141821161761116271114171His Kinase A (phospho-acceptor) domain
3333333322331Armadillo/beta-catenin-like repeat
2022233725202421253091338Tetratricopeptide repeat
4443443533441Ion transport protein
1111111111111DNA gyrase/topoisomerase IV, subunit A
1011111112101212141112126BRCA1 C Terminus (BRCT) domain
67799666771585Glycosyl transferases group 1
4744743693455Glycosyl transferase family 2
1432213352430SAM domain (Sterile alpha motif)
1111111111111linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
616662321437Pectate lyase
4251641212230ribonuclease
1111111111111Urease, gamma subunit
4444444444444CoA-ligase
256392445301315163439286Phosphopantetheine attachment site
3222122242325Formyl transferase
78811997888992Metallopeptidase family M24
1413131513111514161511150Leucine Rich Repeat
3342703653492335434754485alpha/beta hydrolase fold
3333432333333RNA polymerase Rpb2, domain 6
3333334334335PB1 domain
2222222222222Staphylococcal nuclease homologue
9101191291111101011113Rab-GTPase-TBC domain
1111111111111Tudor domain
1111111111111WH1 domain
3544443435645Zinc finger, ZZ type
21213122216HRDC domain
910101011910111099108CBS domain
2222222222222Ribosomal protein L13
2222222222222Ribosomal protein L4/L1 family
1111111111111Clp protease
3343444524238S1 RNA binding domain
1111111111111HIUase/Transthyretin family
5465455544552AhpC/TSA family
4465654445451tRNA synthetases class I (W and Y)
111112121112UvrD/REP helicase N-terminal domain
5547545564656Rhodanese-like domain
2222212222221Universal stress protein family
3435444037313322393454403Acetyltransferase (GNAT) family
211111111111SecE/Sec61-gamma subunits of protein translocation complex
1111111111111C-terminal regulatory domain of Threonine dehydratase
2222222222222AIR synthase related protein, N-terminal domain
8888888898990tRNA synthetase class II core domain (G, H, P, S and T)
222222222220SpoU rRNA Methylase family
2222222222222Tetrapyrrole (Corrin/Porphyrin) Methylases
2121121211115Glycosyl transferase family, a/b domain
1112112221115PDZ domain
64776645771271Class II Aldolase and Adducin N-terminal domain
3443424334438Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5455455555553Fes/CIP4, and EFC/F-BAR homology domain