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PFAM Domains • Yarrowia lipolytica YB567 v1.0
Annotations/GenomesYarli1YarliYB392YarliYB419YarliYB420YarliYB566YarliYB567Yarlip1TotalAnnotation Description
PFAMs
5,7376,9366,9256,9576,9566,9606,77547,246
33313131323230220ATPase family associated with various cellular activities (AAA)
32323232323232224ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
1414141414141498Elongation factor Tu GTP binding domain
988888756Helix-loop-helix DNA-binding domain
233333219Hsp20/alpha crystallin family
111010131112370Hsp70 protein
1177777854KH domain
11SH2 domain
20141414131313101SH3 domain
1010101010101070Actin
2044444444Ankyrin repeat
777777648ADP-ribosylation factor family
37414141414140282Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
11111117Cytochrome c
21111118Double-stranded RNA binding motif
1744444441EF hand
224Fe-4S binding domain
21111118Fibronectin type III domain
31111119Globin
1088888858Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
554544532Homeodomain
222232215lactate/malate dehydrogenase, NAD binding domain
555555535Myosin head (motor domain)
17171717171717119Cytochrome P450
83858585858586594Protein kinase domain
577777747Pyridine nucleotide-disulphide oxidoreductase
24242424242424168Ras family
777777749Response regulator receiver domain
1213131312121388RNase H
55525252525251366RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
2020Reverse transcriptase (RNA-dependent DNA polymerase)
222222214Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
16171717171717118Subtilase family
26353637353537241Sugar (and other) transporter
999999963Thioredoxin
22Trypsin
444444428Tubulin/FtsZ family, GTPase domain
341010101010993Zinc finger, C2H2 type
3633333354Zinc finger, C3HC4 type (RING finger)
632333323Zinc knuckle
222222214Protein-tyrosine phosphatase
29272727272726190short chain dehydrogenase
20161616161610110Zinc-binding dehydrogenase
344444427Thiolase, N-terminal domain
222222214Beta-ketoacyl synthase, N-terminal domain
311111192Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
888888755Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
222222214Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
914141414141493E1-E2 ATPase
1010101011101071Core histone H2A/H2B/H3/H4
11111117Alpha amylase, catalytic domain
11111117Phorbol esters/diacylglycerol binding domain (C1 domain)
633333223Bacterial transferase hexapeptide (six repeats)
355555432tRNA synthetases class I (I, L, M and V)
899999962Cyclin, N-terminal domain
444444428Carboxylesterase family
444444428DNA polymerase family B
333333321ATP synthase subunit C
333333321Peroxidase
333333321Beta-lactamase
32323232323230222Calcineurin-like phosphoesterase
333333321Cellulase (glycosyl hydrolase family 5)
666666642tRNA synthetases class II (D, K and N)
39383838383837266Mitochondrial carrier protein
1414141414141498Aminotransferase class I and II
844444432Phosphoribosyl transferase domain
1011111111111176Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
222222214Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
877777649C2 domain
1811111111111184PH domain
788888855bZIP transcription factor
13161616161615108Aldehyde dehydrogenase family
51505150505151354Fungal Zn(2)-Cys(6) binuclear cluster domain
1514141414141499Cytochrome b5-like Heme/Steroid binding domain
766666643Oxidoreductase NAD-binding domain
19202020202020139SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
16161616161616112Ubiquitin-conjugating enzyme
555555535Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
222222214Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
11111117Annexin
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
333333321Catalase
11111117Disintegrin
1111116UDP-glucoronosyl and UDP-glucosyl transferase
666666642Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
444444428Thiamine pyrophosphate enzyme, central domain
333333321Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
11111117Pyruvate kinase, barrel domain
999999963Kinesin motor domain
31262626262626187DnaJ domain
1414141414141498Proteasome subunit
333333321Major intrinsic protein
11111117ATP synthase
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
222222214Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
999999963Ubiquitin family
344444427Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
11111117Alkaline phosphatase
11111117Zinc carboxypeptidase
1717171717176108Aldo/keto reductase family
1455555544Myb-like DNA-binding domain
333333321Forkhead domain
112Glycosyl hydrolases family 32 N-terminal domain
122222213Ribosomal protein L16p/L10e
122222213Ribosomal protein S14p/S29e
332322318FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
11
1099999863Flavodoxin
11111117Calreticulin family
666666642Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
34393939393938267DEAD/DEAH box helicase
62595960606159420Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111128Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
333333321Pyridoxal-dependent decarboxylase conserved domain
233333320Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
776777748Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
999999963Pyridoxal-phosphate dependent enzyme
999999963NUDIX domain
444444428pfkB family carbohydrate kinase
66666636Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
1010101010101070Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
555555535Calponin homology (CH) domain
533333323Glutamine amidotransferases class-II
222222214Ribosomal protein S15
11111117Fructose-1-6-bisphosphatase, N-terminal domain
222222214Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222222214SRF-type transcription factor (DNA-binding and dimerisation domain)
777777749GATA zinc finger
31171717171717133Amino acid permease
11111117Prolyl oligopeptidase family
222222214Ribosomal protein L30p/L7e
444444428Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444428Aconitase family (aconitate hydratase)
433333322Glycosyl hydrolases family 17
222222113Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
122222213Ribosomal protein S10p/S20e
455555534Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
222222214SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
333333321Polyprenyl synthetase
333333321Hexokinase
455555534Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
11111117Rieske [2Fe-2S] domain
998999861Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333333321FGGY family of carbohydrate kinases, N-terminal domain
1099999964Enoyl-CoA hydratase/isomerase
212222213Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
666666642Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
222222214Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
122222213Phosphatidylinositol-specific phospholipase C, X domain
141616161616397D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
11111117Malic enzyme, N-terminal domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
333333321Multicopper oxidase
655555536WW domain
222222214Ribosomal RNA adenine dimethylase
877777750Yeast PIR protein repeat
94999999999999688WD domain, G-beta repeat
444444428Heavy-metal-associated domain
333333321Adenylate kinase
333333321Phosphoglucomutase/phosphomannomutase, C-terminal domain
233333320Ribosomal protein S8
11111117Ribosomal protein S11
444444428LIM domain
144444425Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
222222214chorismate binding enzyme
44444442860s Acidic ribosomal protein
433333322Prenyltransferase and squalene oxidase repeat
744444431Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
999999963Bromodomain
1110101010101071Acyl-CoA dehydrogenase, C-terminal domain
1413131313131392Ubiquitin carboxyl-terminal hydrolase
222222214Ribonuclease T2 family
333333321HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
1010101010101070Serine carboxypeptidase
899999962Phosphatidylinositol 3- and 4-kinase
122222213Transketolase, thiamine diphosphate binding domain
222222214Inositol monophosphatase family
444444428Glutaredoxin
222233216Isocitrate lyase family
222222214Serine hydroxymethyltransferase
11111117Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
322222215KOW motif
11111117Ribosomal protein L34
233333320RF-1 domain
566666641Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
666666642Protein phosphatase 2C
333333321Nucleotidyl transferase
11111117Carbonic anhydrase
155555531Phosphoribulokinase / Uridine kinase family
444444428Fatty acid desaturase
444444428MutS domain V
11111117Delta-aminolevulinic acid dehydratase
222222214Arginase family
666666642MCM P-loop domain
122222213Squalene/phytoene synthase
788888855FHA domain
18191919191918131AMP-binding enzyme
222222214G-protein alpha subunit
888888856HMG (high mobility group) box
444444428His Kinase A (phospho-acceptor) domain
222222214Armadillo/beta-catenin-like repeat
2211111111111087Tetratricopeptide repeat
11111117Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
1099999964BRCA1 C Terminus (BRCT) domain
544444429Glycosyl transferases group 1
222222214Glycosyl transferase family 2
222222214SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
333333321CoA-ligase
333333321Phosphopantetheine attachment site
222222214Formyl transferase
788888855Metallopeptidase family M24
1011111116Leucine Rich Repeat
1755555547alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
333333220PB1 domain
222222214Staphylococcal nuclease homologue
1111111111111177Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
333333321Zinc finger, ZZ type
11111117HRDC domain
988888857CBS domain
222222214Ribosomal protein L13
122222213Ribosomal protein L4/L1 family
11111117Clp protease
444444327S1 RNA binding domain
11111117HIUase/Transthyretin family
444444428AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
21111118UvrD/REP helicase N-terminal domain
610101010101066Rhodanese-like domain
233333320Universal stress protein family
26212121212121152Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
877777750tRNA synthetase class II core domain (G, H, P, S and T)
222222214SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
222222214Class II Aldolase and Adducin N-terminal domain
455555534Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
566666641Fes/CIP4, and EFC/F-BAR homology domain
422222216IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
21111118Phospholipase D Active site motif
44444424Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
444444428RasGEF domain
444444428RasGEF N-terminal motif
1010101010101070RhoGAP domain
566666540RhoGEF domain
444444428SPRY domain
333333321RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
433333322Gelsolin repeat
955555539UBA/TS-N domain
1411111111111180PHD-finger
11111117GGL domain
666666642HECT-domain (ubiquitin-transferase)
1111116Helix-hairpin-helix motif
222222214MSP (Major sperm protein) domain
21111118Ribonuclease III domain
255555532Region in Clathrin and VPS
333333321RanBP1 domain
11111117PPIC-type PPIASE domain
11111117Zn-finger in Ran binding protein and others
1077777752Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111117B-box zinc finger
11111117Poly(ADP-ribose) polymerase catalytic domain
43202020202020163F-box domain
222222214Elongation factor 1 gamma, conserved domain
11111117Calpain family cysteine protease
222222214Copper fist DNA binding domain
777777749CRAL/TRIO domain
15202020202120136BTB/POZ domain
11111117Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
11111117Caspase domain
222222214GDSL-like Lipase/Acylhydrolase
222222214Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
16161616171716114ABC transporter transmembrane region
1010Integrase core domain
333333321FAD binding domain
11Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
777777749Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
777777749Elongation factor G C-terminus
444444327HMGL-like
444444428DnaJ central domain
244444426Ribosomal protein L1p/L10e family
455555534Cation transporting ATPase, C-terminus
555555535Cation transporter/ATPase, N-terminus
11111117dUTPase
444444428Aconitase C-terminal domain
333333321Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
222222214Acyl transferase domain
11111117Dihydrodipicolinate synthetase family
2199999975haloacid dehalogenase-like hydrolase
333333321Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11111117Adenylosuccinate synthetase
333333321Peptidase S24-like
222222214Inorganic pyrophosphatase
333333321Glycosyl hydrolases family 16
11111117Glycosyl hydrolases family 15
688888854NADH:flavin oxidoreductase / NADH oxidase family
11111163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
333333321HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
11111117GMC oxidoreductase
222222214Asparagine synthase
799999961Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
133333319Flavin-binding monooxygenase-like
333333321tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
433333322XPG N-terminal domain
333333321Metallo-beta-lactamase superfamily
11F5/8 type C domain
222222214Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Ferrochelatase
333333321Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
444444428RNB domain
233333320CNH domain
222222214Diacylglycerol kinase catalytic domain
677777748Dual specificity phosphatase, catalytic domain
222222214P21-Rho-binding domain
1313131313131290PX domain
322222215Ras association (RalGDS/AF-6) domain
666666541UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
444444428Carbon-nitrogen hydrolase
11111117Prephenate dehydratase
655555536Syntaxin
533333323Pumilio-family RNA binding repeat
666666541Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222222214tRNA N6-adenosine threonylcarbamoyltransferase
11111117Histidinol dehydrogenase
222222214impB/mucB/samB family
11
11111117Ribosomal L15
133333319Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
222222214RNA pseudouridylate synthase
555555535Histone deacetylase domain
777777749POT family
11111117PWWP domain
1012121212121181SET domain
11111117Isochorismatase family
222222214Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
444444428XPG I-region
1111116Cation-independent mannose-6-phosphate receptor repeat
1111116Zinc dependent phospholipase C
11111117Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
222222214Acyl CoA binding protein
444444428Cullin family
1111116FAD binding domain
444444428EamA-like transporter family
22
888888856ThiF family
11111117Ribosomal family S4e
222222214Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
666666642Ammonium Transporter Family
333333321Sulfate permease family
1111116MATH domain
11111117Dehydratase family
11111117Transaldolase/Fructose-6-phosphate aldolase
11111117Mechanosensitive ion channel
122222213GTP cyclohydrolase II
111111173,4-dihydroxy-2-butanone 4-phosphate synthase
555555535Adaptor complexes medium subunit family
666666642Exonuclease
11111117Dipeptidyl peptidase IV (DPP IV) N-terminal region
666666642Glycosyl hydrolase family 3 N terminal domain
11111117Ribosomal protein L44
1111116Sodium:sulfate symporter transmembrane region
11111117DNA-dependent RNA polymerase
11111117Glycosyl transferase family 4
11111117HCO3- transporter family
11111117Nucleosome assembly protein (NAP)
555555535Synaptobrevin
11111117GMP synthase C terminal domain
11111117Adenosine/AMP deaminase
555555535Oxidoreductase FAD-binding domain
222222214Histidine biosynthesis protein
333333321Glycosyltransferase family 20
11111117UDP-glucose/GDP-mannose dehydrogenase family, central domain
222222214Carbamoyl-phosphate synthase small chain, CPSase domain
112PAS fold
11111117Probable molybdopterin binding domain
4444444