PFAM Domains • Neocallimastigomycota
Annotations/GenomesAnasp1Caecom1Neosp1Orpsp1_1PirE2_1Pirfi3TotalAnnotation Description
PFAMs
9,30513,58913,98710,8388,4228,15164,292
4578484110402627 transmembrane sweet-taste receptor of 3 GCPR
424160434040266ATPase family associated with various cellular activities (AAA)
10410813810114462657ABC transporter
44654427ATP synthase alpha/beta family, nucleotide-binding domain
2131512EGF-like domain
121115691265Elongation factor Tu GTP binding domain
791437848Helix-loop-helix DNA-binding domain
5255146223223330Hsp20/alpha crystallin family
171078342431194Hsp70 protein
911211271171KH domain
1214SH2 domain
101861501158589626SH3 domain
11101714101072Actin
5522155781,0847092683,406Ankyrin repeat
11622214PAN domain
1121189131284ADP-ribosylation factor family
112116Eukaryotic aspartyl protease
1115161181071Cyclic nucleotide-binding domain
22331112Double-stranded RNA binding motif
3961352738200EF hand
22322114Fe-4S binding domain
131117Fibronectin type III domain
48713326Glutathione S-transferase, C-terminal domain
34733323Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1210234111373Homeodomain
13412213lactate/malate dehydrogenase, NAD binding domain
123Lectin C-type domain
131224271314103Myosin head (motor domain)
1831943212141521831,247Protein kinase domain
34623321Pyridine nucleotide-disulphide oxidoreductase
374764332733241Ras family
53543323Response regulator receiver domain
11114RNase H
9092143877691579RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
13812150Reverse transcriptase (RNA-dependent DNA polymerase)
1212312413164Serpin (serine protease inhibitor)
111115Iron/manganese superoxide dismutases, alpha-hairpin domain
14858571078039489Subtilase family
2521114272517229Sugar (and other) transporter
212229321517136Thioredoxin
6151527Trefoil (P-type) domain
11Trypsin
881266949Tubulin/FtsZ family, GTPase domain
10161612559von Willebrand factor type A domain
481880284750271Zinc finger, C2H2 type
65491364868312Zinc finger, C3HC4 type (RING finger)
302441692023207Zinc knuckle
33734424Protein-tyrosine phosphatase
1515171212980short chain dehydrogenase
561336740Zinc-binding dehydrogenase
1121117Thiolase, N-terminal domain
1512289151190Beta-ketoacyl synthase, N-terminal domain
214223142Fe-2S iron-sulfur cluster binding domain
1616Papain family cysteine protease
1121117Enolase, C-terminal TIM barrel domain
871488853Glutamine amidotransferase class-I
12142114111284TCP-1/cpn60 chaperonin family
22412213Glutamine synthetase, catalytic domain
112116Triosephosphate isomerase
13182212121693E1-E2 ATPase
771456847Core histone H2A/H2B/H3/H4
11812117554Alpha amylase, catalytic domain
1312252481496Phorbol esters/diacylglycerol binding domain (C1 domain)
107161081667Bacterial transferase hexapeptide (six repeats)
34554425tRNA synthetases class I (I, L, M and V)
17182817818106Cyclin, N-terminal domain
321247454026202Carboxylesterase family
865861043DNA polymerase family B
33613319ATP synthase subunit C
22412213C-5 cytosine-specific DNA methylase
694966494038311Calcineurin-like phosphoesterase
252149423624197Cellulase (glycosyl hydrolase family 5)
33632320tRNA synthetases class II (D, K and N)
13152413111389Mitochondrial carrier protein
202547222626166Aminotransferase class I and II
105178101060Phosphoribosyl transferase domain
15171913151695Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
22412213Phosphoglycerate kinase
2231210Ribosomal protein S4/S9 N-terminal domain
1232210Ribosomal protein S12/S23
112Bacterial regulatory helix-turn-helix proteins, AraC family
112116Chaperonin 10 Kd subunit
374461413133247C2 domain
402472462745254PH domain
9101457752bZIP transcription factor
15111110Aldehyde dehydrogenase family
1892913131799Fungal Zn(2)-Cys(6) binuclear cluster domain
13712581358Cytochrome b5-like Heme/Steroid binding domain
32221313Oxidoreductase NAD-binding domain
182029231816124SNF2 family N-terminal domain
123118Ribosomal protein S7p/S5e
262744201426157Ubiquitin-conjugating enzyme
35633323Isocitrate/isopropylmalate dehydrogenase
1111116Ribosomal Proteins L2, RNA binding domain
44533322Hsp90 protein
33513318Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1121117Dihydrofolate reductase
130196186180223921,007Chitin recognition protein
1021141623892Cysteine-rich secretory protein family
1121117Ribosomal protein S3, C-terminal domain
68965640Annexin
11Extracellular link domain
1113Eukaryotic-type carbonic anhydrase
32222112UDP-glucoronosyl and UDP-glucosyl transferase
1121117Aminotransferase class-III
212117Ribosomal protein S19
112116DNA gyrase B
44514523Thiamine pyrophosphate enzyme, central domain
32622318Lyase
141612714770Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
32423216Sodium:neurotransmitter symporter family
112Ferritin-like domain
35722322Adenylate and Guanylate cyclase catalytic domain
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
22312212Indole-3-glycerol phosphate synthase
1522111Pyruvate kinase, barrel domain
252836352424172Kinesin motor domain
364054242636216DnaJ domain
13142710111489Proteasome subunit
112116Major intrinsic protein
1111116ATP synthase
771610161066Glycosyl hydrolase family 1
61016378503'5'-cyclic nucleotide phosphodiesterase
12227Profilin
1121117Ribosomal protein L22p/L17e
1122118Ribosomal protein L14p/L23e
11Resolvase, N terminal domain
232246211524151Ubiquitin family
9101683955Cofilin/tropomyosin-type actin-binding protein
112111714-3-3 protein
122218Alkaline phosphatase
44433422Zinc carboxypeptidase
233227141912127Aldo/keto reductase family
2272017122098Myb-like DNA-binding domain
44714424Forkhead domain
2111115Glycosyl hydrolases family 32 N-terminal domain
11Ribosomal protein L16p/L10e
122117Ribosomal protein S14p/S29e
66945636FKBP-type peptidyl-prolyl cis-trans isomerase
222725139Glutathione peroxidase
12115
54374427Flavodoxin
33463322Calreticulin family
1113Thymidine kinase
33413317Aminotransferase class-V
424752423542260DEAD/DEAH box helicase
717692635574431Helicase conserved C-terminal domain
1112117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
1121117Ribosomal protein L23
2121118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22432215Ribosomal protein L5
22553118Pyridoxal-dependent decarboxylase conserved domain
1121117Citrate synthase, C-terminal domain
64664531GHMP kinases N terminal domain
33623320Biotin carboxylase, N-terminal domain
22112210Tryptophan synthase alpha chain
119162111059Pyridoxal-phosphate dependent enzyme
11171814121284NUDIX domain
33312315pfkB family carbohydrate kinase
112Glycosyl hydrolases family 28
1121117Ribosomal protein L3
112116Ribosomal protein L11, RNA binding domain
871055641Histidine phosphatase superfamily (branch 1)
1113Rubredoxin
24118Chloramphenicol acetyltransferase
1112117Thymidylate synthase
44644426ATP synthase alpha/beta chain, C terminal domain
16152311101590Calponin homology (CH) domain
34523320Glutamine amidotransferases class-II
32322214Ribosomal protein S15
2142211'Cold-shock' DNA-binding domain
23312213Ribosomal protein S2
23622217SRF-type transcription factor (DNA-binding and dimerisation domain)
1414247121485GATA zinc finger
123118Amino acid permease
58933533Prolyl oligopeptidase family
22332113Ribosomal protein L30p/L7e
54655530Histidine phosphatase superfamily (branch 2)
44854530Aconitase family (aconitate hydratase)
151258292821163Glycosyl hydrolase family 10
112116Ribosomal protein S5, N-terminal domain
45432321Nucleoside diphosphate kinase
1821214Tetraspanin family
12115Ribosomal protein S10p/S20e
112217Arrestin (or S-antigen), N-terminal domain
11Interleukin-1 / 18
112116Phosphoglucose isomerase
1123119Carbohydrate phosphorylase
221117SecY translocase
1121117Ribosomal protein L6
22222212Polyprenyl synthetase
44854429Hexokinase
412724332Dynamin family
22252215Transcription factor TFIID (or TATA-binding protein, TBP)
112116Biotin-requiring enzyme
53843427Phosphofructokinase
112116Ribosomal protein S17
11Hydroxymethylglutaryl-coenzyme A reductase
2121219FGGY family of carbohydrate kinases, N-terminal domain
33442319FERM central domain
22217Sodium:dicarboxylate symporter family
2226Enoyl-CoA hydratase/isomerase
2121118Ribosomal protein S9/S16
2533215Transcription factor TFIIB repeat
55632526Cytidine and deoxycytidylate deaminase zinc-binding region
4472217458Chromo (CHRromatin Organisation MOdifier) domain
112217Phosphatidylinositol-specific phospholipase C, Y domain
414783541Phosphatidylinositol-specific phospholipase C, X domain
44713423D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
23612216Malic enzyme, N-terminal domain
3592120PEP-utilising enzyme, mobile domain
1312191471580WW domain
1112117Ribosomal RNA adenine dimethylase
1781842652131501971,187WD domain, G-beta repeat
56985437Adenylate kinase
22412213Phosphoglucomutase/phosphomannomutase, C-terminal domain
112116Ribosomal protein S8
112116Ribosomal protein S11
152424161214105LIM domain
23211211Regulator of chromosome condensation (RCC1) repeat
1121117Ribosomal protein S13/S18
112
1111116chorismate binding enzyme
5693543260s Acidic ribosomal protein
43523421Prenyltransferase and squalene oxidase repeat
111122651267Protein kinase C terminal domain
21432416S-adenosylmethionine synthetase, N-terminal domain
15162315131496Bromodomain
162026231414113Ubiquitin carboxyl-terminal hydrolase
22331112Ribonuclease T2 family
871765548HSF-type DNA-binding
23331214SRP54-type protein, GTPase domain
22421213Serine carboxypeptidase
913141310867Phosphatidylinositol 3- and 4-kinase
23374221Transketolase, thiamine diphosphate binding domain
292824435636216Glycosyl hydrolases family 11
1122118WHEP-TRS domain
22332214Inositol monophosphatase family
65852430Glutaredoxin
22332214Serine hydroxymethyltransferase
7131459654Iron-containing alcohol dehydrogenase
32411213Ribosomal protein L10
54915630KOW motif
11RF-1 domain
53311215Sodium:solute symporter family
111115Imidazoleglycerol-phosphate dehydratase
32733220IMP dehydrogenase / GMP reductase domain
101321581269Protein phosphatase 2C
24542320Nucleotidyl transferase
2222210Carbonic anhydrase
122218Phosphoribulokinase / Uridine kinase family
33433319MutS domain V
1111116Arginase family
88996848MCM P-loop domain
1121117Squalene/phytoene synthase
2961128Bacterial extracellular solute-binding proteins, family 3
1616255111689FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
72254722511214495AMP-binding enzyme
912181010867G-protein alpha subunit
8122417111183HMG (high mobility group) box
2121118His Kinase A (phospho-acceptor) domain
1110201691379Armadillo/beta-catenin-like repeat
523671614065325Tetratricopeptide repeat
122423171120107Ion transport protein
112116DNA gyrase/topoisomerase IV, subunit A
11Dictyostelium (slime mold) repeat
1415215131583BRCA1 C Terminus (BRCT) domain
881167848Glycosyl transferases group 1
1262469562Glycosyl transferase family 2
44342320SAM domain (Sterile alpha motif)
21311210linker histone H1 and H5 family
42311414974Pectate lyase
23533319CoA-ligase
47826130746291Phosphopantetheine attachment site
22222212Formyl transferase
11Cellulose binding domain
781096747Metallopeptidase family M24
2552403173431872331,575Leucine Rich Repeat
17337202912118alpha/beta hydrolase fold
7424761260RNA polymerase Rpb2, domain 6
46653428PB1 domain
111317Staphylococcal nuclease homologue
162222131116100Rab-GTPase-TBC domain
121116Tudor domain
22411212WH1 domain
66851632Zinc finger, ZZ type
23151113HRDC domain
109201181068CBS domain
112116Ribosomal protein L13
112116Ribosomal protein L4/L1 family
11215Clp protease
33552422S1 RNA binding domain
23243216tRNA synthetases class I (W and Y)
11UvrD/REP helicase N-terminal domain
4653220Rhodanese-like domain
22321111Universal stress protein family
422341173029182Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1121117C-terminal regulatory domain of Threonine dehydratase
23322214AIR synthase related protein, N-terminal domain
75985640tRNA synthetase class II core domain (G, H, P, S and T)
111115SpoU rRNA Methylase family
112116Tetrapyrrole (Corrin/Porphyrin) Methylases
112116Glycosyl transferase family, a/b domain
1121117Diacylglycerol kinase accessory domain
541165536Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
8121344445Fes/CIP4, and EFC/F-BAR homology domain
191126211622115IQ calmodulin-binding motif
22431214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
1214Phospholipase D Active site motif
537612354Regulator of G protein signaling domain
109171491069GTPase-activator protein for Ras-like GTPase
161727151016101RasGEF domain
141424571579RasGEF N-terminal motif
232343271621153RhoGAP domain
314551302228207RhoGEF domain
111115861162SPRY domain
433351129RNA polymerase Rpb1, domain 2
2442214Guanylate kinase
891599858Gelsolin repeat
1312291691594UBA/TS-N domain
18923991684PHD-finger
22Filamin/ABP280 repeat
2331312GGL domain
2115320812111307HECT-domain (ubiquitin-transferase)
112116Helix-hairpin-helix motif
111115BRCA2 repeat
22542217MSP (Major sperm protein) domain
33361319Ribonuclease III domain
14431316Region in Clathrin and VPS
33413317RanBP1 domain
22312212PPIC-type PPIASE domain
2112219Zn-finger in Ran binding protein and others
271343241928154Zinc finger C-x8-C-x5-C-x3-H type (and similar)
32222314B-box zinc finger
23422215Poly(ADP-ribose) polymerase catalytic domain
11Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
35863313539211F-box domain
112116Elongation factor 1 gamma, conserved domain
121116Calpain family cysteine protease
661135637CRAL/TRIO domain
671084540BTB/POZ domain
511057312122192Ricin-type beta-trefoil lectin domain
221117Inhibitor of Apoptosis domain
33353320Voltage gated chloride channel
1092112121276Caspase domain
24263218259134GDSL-like Lipase/Acylhydrolase
2242212Poly-adenylate binding protein, unique domain
112127POLO box duplicated region
393135394223209ABC transporter transmembrane region
1646170Integrase core domain
43342319FAD binding domain
43518180843333Condensation domain
112116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
22432215ribosomal L5P family C-terminus
56755634Insulinase (Peptidase family M16)
11114Lumazine binding domain
43423420Elongation factor G C-terminus
43923526HMGL-like
651054636DnaJ central domain
1321119Ribosomal protein L1p/L10e family
571035737Cation transporting ATPase, C-terminus
561035736Cation transporter/ATPase, N-terminus
111115dUTPase
44624525Aconitase C-terminal domain
58886641Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
681346744Acyl transferase domain
11Bacterial flagellin C-terminal helical region
18829161923113haloacid dehalogenase-like hydrolase
13611113Glycosyl hydrolases family 2
10131695861Glycosyl hydrolases family 18
122128Proliferating cell nuclear antigen, N-terminal domain
1121117Acylphosphatase
1121117Adenylosuccinate synthetase
1121117Asparaginase, N-terminal
11Beta defensin
33223215Peptidase S24-like
23322214Inorganic pyrophosphatase
1171966655Glycosyl hydrolases family 16
49645331NADH:flavin oxidoreductase / NADH oxidase family
3264153-hydroxyacyl-CoA dehydrogenase, C-terminal domain
1121117Glycosyl hydrolase family 20, catalytic domain
23242215HhH-GPD superfamily base excision DNA repair protein
1211139AIR carboxylase
111115Asparagine synthase
6150121777560444Fungal cellulose binding domain
771497751Septin
11215EF-1 guanine nucleotide exchange domain
1122118Homoserine dehydrogenase
112LPXTG cell wall anchor motif
22432215tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
32322315XPG N-terminal domain
202026181014108Metallo-beta-lactamase superfamily
11633115F5/8 type C domain
12302312216104Putative esterase
991413121269Glycosyl hydrolase family 9
32353218Ferrochelatase
1121117Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
212117Arginosuccinate synthase
36685331RNB domain
681285847CNH domain
12312211Diacylglycerol kinase catalytic domain
91215971163Dual specificity phosphatase, catalytic domain
35793431MyTH4 domain
641384540P21-Rho-binding domain
171727201016107PX domain
651475845Ras association (RalGDS/AF-6) domain
66731629UBX domain
33452320VHS domain
1123119Phosphoinositide 3-kinase C2
21421212DAHP synthetase I family
33414318Carbon-nitrogen hydrolase
21115Geminivirus Rep catalytic domain
1222119Prephenate dehydratase
541232531Syntaxin
1315Pentapeptide repeats (8 copies)
55865433Pumilio-family RNA binding repeat
551125634Histone-like transcription factor (CBF/NF-Y) and archaeal histone
111115Pterin binding enzyme
23312213ER lumen protein retaining receptor
111115Glycoprotease family
1111127Histidinol dehydrogenase
212229impB/mucB/samB family
74824328Phosphoenolpyruvate carboxykinase C-terminal P-loop domain
2533215
22312212Ribosomal L15
1222119Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
112116Ribosomal L29 protein
112116Ribosomal L39 protein
112116Ribosomal S17
1121117Ribulose-phosphate 3 epimerase family
1121117Translationally controlled tumour protein
33321315RNA pseudouridylate synthase
57795639Histone deacetylase domain
53422218Glycosyltransferase family 10 (fucosyltransferase) C-term
13127POT family
132129PWWP domain
201819111418100SET domain
2242212Isochorismatase family
35112113Permease family
1121117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
22ATP P2X receptor
33332317XPG I-region
6331215NlpC/P60 family
34832323Nitroreductase family
33323216Cytosol aminopeptidase family, catalytic domain
1113Sulfatase
25122126,7-dimethyl-8-ribityllumazine synthase
3333214Acyl CoA binding protein
767116542Cullin family
55635327FAD binding domain
11O-methyltransferase domain
111116891166EamA-like transporter family
112Small Multidrug Resistance protein
11226
889117851ThiF family
112116Ribosomal family S4e
2121219Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
22Involucrin repeat
1111116T-box
11dTDP-4-dehydrorhamnose 3,5-epimerase
3374320Ammonium Transporter Family
235RNA helicase
45522220Sulfate permease family
181225651110141MATH domain
1212118Uncharacterized protein family UPF0004
1121117Dehydratase family
11223211Transaldolase/Fructose-6-phosphate aldolase
23322214Mechanosensitive ion channel
2121118GTP cyclohydrolase II
1211163,4-dihydroxy-2-butanone 4-phosphate synthase
45732425Adaptor complexes medium subunit family
61014117957Exonuclease
11221411Dipeptidyl peptidase IV (DPP IV) N-terminal region
151048172415129Glycosyl hydrolase family 3 N terminal domain
1121117Ribosomal protein L44
15211111Sodium:sulfate symporter transmembrane region
111115Glycosyl transferase family 4
21322212Nucleosome assembly protein (NAP)
65833530Synaptobrevin
112116GMP synthase C terminal domain
1412614Phage lysozyme
22332214Adenosine/AMP deaminase
22Barwin family
1113Thioesterase domain
22222212Histidine biosynthesis protein
55766534Glycosyltransferase family 20
13842119UDP-glucose/GDP-mannose dehydrogenase family, central domain
31633319Carbamoyl-phosphate synthase small chain, CPSase domain
31611315PAS fold
11215Probable molybdopterin binding domain
56785637Sec1 family
44742324GDP dissociation inhibitor
43673326Sodium/hydrogen exchanger family
2242212RNA polymerase Rpb3/RpoA insert domain
581055538Initiation factor 2 subunit family
1112128PQQ enzyme repeat
1121128Ribosomal S3Ae family
2226Ribosomal L40e family
11215GrpE
47445428TatD related DNase
1122118Eukaryotic DNA topoisomerase I, catalytic core
1221118Dynamin central region
1222186-O-methylguanine DNA methyltransferase, DNA binding domain
12115Carboxyl transferase domain
22311211Endoribonuclease L-PSP
11SecA preprotein cross-linking domain
23312213Vinculin family
5218Phosphorylase superfamily
8220710754Cys/Met metabolism PLP-dependent enzyme
739205448Glycosyl hydrolases family 31
531073331ABC-2 type transporter
44Bestrophin, RFP-TM, chloride channel
2241110Amino-transferase class IV
56752429CDP-alcohol phosphatidyltransferase
12115Calpain large subunit, domain III
32212212ATP dependent DNA ligase domain
32322315FMN-dependent dehydrogenase
1111116Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
1123-beta hydroxysteroid dehydrogenase/isomerase family
211116Glycosyl hydrolases family 38 N-terminal domain
22421213Presenilin
11Clathrin light chain
11114Galactose-1-phosphate uridyl transferase, N-terminal domain
2241211Ubiquitin carboxyl-terminal hydrolase, family 1
22322213Ribosomal protein S19e
1121117Ribosomal protein S6e
511488541Pectinesterase
34422318Transcription factor S-II (TFIIS)
1112117Surface antigen
24633321emp24/gp25L/p24 family/GOLD
1111116NifU-like domain
111115Cyclin-dependent kinase regulatory subunit
1111116Asparaginase
1122118F-actin capping protein, beta subunit
12332213Fructose-bisphosphate aldolase class-II
24311213Semialdehyde dehydrogenase, NAD binding domain
34322317DNA mismatch repair protein, C-terminal domain
32531317Dephospho-CoA kinase
11MAPEG family
11114G10 protein
112-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
23322214DNA topoisomerase
11316Enhancer of rudimentary
11Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
111115RNA 3'-terminal phosphate cyclase
676676383' exoribonuclease family, domain 1
1111116tRNA pseudouridine synthase D (TruD)
1242556456SPFH domain / Band 7 family
22