PFAM Domains • Phoma multirostrata 7a v1.0
Annotations/GenomesAscra1Boeex1Didex1Didma1Macan1Phomu1TotalAnnotation Description
PFAMs
10,53111,8458,43210,9678,69211,52461,991
11137 transmembrane receptor (Secretin family)
424740434243257ATPase family associated with various cellular activities (AAA)
554639393741257ABC transporter
54444425ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
16161416141793Elongation factor Tu GTP binding domain
11121411121272Helix-loop-helix DNA-binding domain
33333318Hsp20/alpha crystallin family
10127871054Hsp70 protein
76777640KH domain
112SH2 domain
12132312231295SH3 domain
10101010101060Actin
91859197918202Ankyrin repeat
12834321PAN domain
78888847ADP-ribosylation factor family
16161117101686Eukaryotic aspartyl protease
44444424Cyclic nucleotide-binding domain
22Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
1111116Cytochrome c
1211218Double-stranded RNA binding motif
2217318244EF hand
21144Fe-4S binding domain
12212210Fibronectin type III domain
1111116Globin
11101214131272Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
55749636Homeodomain
45444425lactate/malate dehydrogenase, NAD binding domain
54454527Myosin head (motor domain)
76109841017486530Cytochrome P450
122136111128121122740Protein kinase domain
14121513161383Pyridine nucleotide-disulphide oxidoreductase
252523252325146Ras family
302726262427160Response regulator receiver domain
24386124RNase H
515158535850321RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
21012Reverse transcriptase (RNA-dependent DNA polymerase)
43343421Copper/zinc superoxide dismutase (SODC)
32222213Iron/manganese superoxide dismutases, alpha-hairpin domain
131761481270Subtilase family
80110688282104526Sugar (and other) transporter
14151214131583Thioredoxin
23433419Trypsin
44444424Tubulin/FtsZ family, GTPase domain
121318von Willebrand factor type A domain
192559166328210Zinc finger, C2H2 type
44576523126Zinc finger, C3HC4 type (RING finger)
72476329Zinc knuckle
22232213Protein-tyrosine phosphatase
106138102116112130704short chain dehydrogenase
576759575466360Zinc-binding dehydrogenase
66555532Thiolase, N-terminal domain
151011158867Beta-ketoacyl synthase, N-terminal domain
536465292Fe-2S iron-sulfur cluster binding domain
1111116Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
101091081057Glutamine amidotransferase class-I
9101010101059TCP-1/cpn60 chaperonin family
11ATP synthase A chain
23333317Glutamine synthetase, catalytic domain
22222212Triosephosphate isomerase
171915181522106E1-E2 ATPase
89988749Core histone H2A/H2B/H3/H4
33Bacterial regulatory helix-turn-helix protein, lysR family
1214Copper binding proteins, plastocyanin/azurin family
58667638Alpha amylase, catalytic domain
22221211Phorbol esters/diacylglycerol binding domain (C1 domain)
88756741Bacterial transferase hexapeptide (six repeats)
55353526tRNA synthetases class I (I, L, M and V)
88787947Cyclin, N-terminal domain
293928333132192Carboxylesterase family
44444424DNA polymerase family B
44444424ATP synthase subunit C
9129971056Peroxidase
12181112121479Beta-lactamase
33332317C-5 cytosine-specific DNA methylase
22NADH dehydrogenase
222327232823146Calcineurin-like phosphoesterase
202313161320105Cellulase (glycosyl hydrolase family 5)
78777743tRNA synthetases class II (D, K and N)
383840394241238Mitochondrial carrier protein
11recA bacterial DNA recombination protein
191715171919106Aminotransferase class I and II
55949436Phosphoribosyl transferase domain
12121212111271Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1111116Bacterial regulatory helix-turn-helix proteins, AraC family
111115Chaperonin 10 Kd subunit
10111210111165C2 domain
9121810181178PH domain
12191115111684bZIP transcription factor
263519242025149Aldehyde dehydrogenase family
1032581651291972491,101Fungal Zn(2)-Cys(6) binuclear cluster domain
212326232325141Cytochrome b5-like Heme/Steroid binding domain
44445627Oxidoreductase molybdopterin binding domain
14171714152097Oxidoreductase NAD-binding domain
252825262422150SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
232523242326144Ubiquitin-conjugating enzyme
78777844Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
2111117Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
38668334Chitin recognition protein
43543524Cysteine-rich secretory protein family
111115Ribosomal protein S3, C-terminal domain
865661142Cupin
22222212Annexin
22212211Eukaryotic-type carbonic anhydrase
1111116Chalcone and stilbene synthases, N-terminal domain
44Bacterial regulatory proteins, luxR family
433334202-oxoacid dehydrogenases acyltransferase (catalytic domain)
76787944Catalase
1111116Disintegrin
310131624UDP-glucoronosyl and UDP-glucosyl transferase
7971010851Aminotransferase class-III
22222212Ribosomal protein S19
1111116DNA gyrase B
46564732Thiamine pyrophosphate enzyme, central domain
44333421Lyase
32222213Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111138Sodium:neurotransmitter symporter family
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
11Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
10111010101061Kinesin motor domain
273229333029180DnaJ domain
11141414141380Proteasome subunit
868681046Major intrinsic protein
1111116ATP synthase
45444425Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
1212129Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
10101210101163Ubiquitin family
35556529Cofilin/tropomyosin-type actin-binding protein
3323231614-3-3 protein
33527323Alkaline phosphatase
998981053Zinc carboxypeptidase
334025333341205Aldo/keto reductase family
7814613654Myb-like DNA-binding domain
44444424Forkhead domain
34242318Glycosyl hydrolases family 32 N-terminal domain
22121210Ribosomal protein L16p/L10e
13323315Ribosomal protein S14p/S29e
65555531FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
112
678681045Flavodoxin
1111116Calreticulin family
16221117111693Common central domain of tyrosinase
1197971053Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
454546433942260DEAD/DEAH box helicase
727377707169432Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
121217Ribosomal protein L5
67666637Pyridoxal-dependent decarboxylase conserved domain
54232420Citrate synthase, C-terminal domain
55555530GHMP kinases N terminal domain
77777742Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
11141214111375Pyridoxal-phosphate dependent enzyme
15151615171896NUDIX domain
65667737pfkB family carbohydrate kinase
11151310101473Glycosyl hydrolases family 28
1171101737Luciferase-like monooxygenase
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
16181313131588Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
1111116Lipoxygenase
44444424ATP synthase alpha/beta chain, C terminal domain
55353526Calponin homology (CH) domain
32525219Glutamine amidotransferases class-II
22222212Ribosomal protein S15
22'Cold-shock' DNA-binding domain
1111116Thaumatin family
12222211Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
21222110SRF-type transcription factor (DNA-binding and dimerisation domain)
66756737GATA zinc finger
171733194118145Amino acid permease
88575639Prolyl oligopeptidase family
33233317Ribosomal protein L30p/L7e
13121414131379Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
45446629Aconitase family (aconitate hydratase)
54365427Glycosyl hydrolase family 10
21536320Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
21115Tetraspanin family
22121210Ribosomal protein S10p/S20e
57463631Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
35434322Polyprenyl synthetase
55555429Hexokinase
111541051156Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
67857740Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
112Phytochrome region
44Proton-conducting membrane transporter
99899852Biotin-requiring enzyme
111115Phosphofructokinase
22222212Ribosomal protein S17
22121210Hydroxymethylglutaryl-coenzyme A reductase
43333319FGGY family of carbohydrate kinases, N-terminal domain
111115Sodium:dicarboxylate symporter family
1113111191267Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
67796742Cytidine and deoxycytidylate deaminase zinc-binding region
1111228Molybdopterin oxidoreductase
44565731Chromo (CHRromatin Organisation MOdifier) domain
33333318Phosphatidylinositol-specific phospholipase C, Y domain
44343422Phosphatidylinositol-specific phospholipase C, X domain
711788950D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
32122212Malic enzyme, N-terminal domain
11Bacterial regulatory proteins, gntR family
222222126-phosphogluconate dehydrogenase, C-terminal domain
89811111360Multicopper oxidase
10111213111168WW domain
2211129Ribosomal RNA adenine dimethylase
21222211Yeast PIR protein repeat
100104106110144116680WD domain, G-beta repeat
45554528Heavy-metal-associated domain
53334321Adenylate kinase
33232316Phosphoglucomutase/phosphomannomutase, C-terminal domain
22222212Ribosomal protein S8
22121210Ribosomal protein S11
44445425LIM domain
11Matrixin
23221212Regulator of chromosome condensation (RCC1) repeat
12222211Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
22222212chorismate binding enzyme
3344442260s Acidic ribosomal protein
44434423Prenyltransferase and squalene oxidase repeat
43545324Protein kinase C terminal domain
1111116Single-strand binding protein family
11Type II/IV secretion system protein
1111116S-adenosylmethionine synthetase, N-terminal domain
77777742Bromodomain
2121Bacterial regulatory proteins, tetR family
19151513141389Acyl-CoA dehydrogenase, C-terminal domain
14181517141492Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
34332217Ribonuclease T2 family
33333318HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
2111117Urease alpha-subunit, N-terminal domain
129912111164Serine carboxypeptidase
78888847Phosphatidylinositol 3- and 4-kinase
36344424Transketolase, thiamine diphosphate binding domain
32353319Glycosyl hydrolases family 11
45555529Inositol monophosphatase family
44444424Glutaredoxin
22324215Isocitrate lyase family
22222212Serine hydroxymethyltransferase
55454528Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
44343422KOW motif
1111116Ribosomal protein L34
112Negative factor, (F-Protein) or Nef
112Ribosomal protein L33
33232316RF-1 domain
44441421Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
111115DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
77777742Protein phosphatase 2C
33333318Nucleotidyl transferase
32133315Carbonic anhydrase
34131315Phosphoribulokinase / Uridine kinase family
33Transcriptional regulatory protein, C terminal
89799951Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
35444424Arginase family
66666636MCM P-loop domain
33232316Squalene/phytoene synthase
516Bacterial extracellular solute-binding proteins, family 5 Middle
2125Bacterial extracellular solute-binding proteins, family 3
89999852FHA domain
464738464144262AMP-binding enzyme
45555529G-protein alpha subunit
87897746HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
242422232223138His Kinase A (phospho-acceptor) domain
22323214Armadillo/beta-catenin-like repeat
121125133915115Tetratricopeptide repeat
13413214Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
88Binding-protein-dependent transport system inner membrane component
9912712958BRCA1 C Terminus (BRCT) domain
46555429Glycosyl transferases group 1
22324215Glycosyl transferase family 2
33332317SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1012116111363Pectate lyase
1531212ribonuclease
2111117Urease, gamma subunit
44444424CoA-ligase
202011231216102Phosphopantetheine attachment site
33333318Formyl transferase
91191291161Metallopeptidase family M24
1213114233Leucine Rich Repeat
12123883511116alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
44444424PB1 domain
22222212Staphylococcal nuclease homologue
12121212111271Rab-GTPase-TBC domain
1111116Tudor domain
1111116WH1 domain
55455630Zinc finger, ZZ type
33333318HRDC domain
879710748CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
65353527S1 RNA binding domain
1111116HIUase/Transthyretin family
55876738AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
1111116UvrD/REP helicase N-terminal domain
910594845Rhodanese-like domain
32222213Universal stress protein family
263235364533207Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
42222214AIR synthase related protein, N-terminal domain
77878744tRNA synthetase class II core domain (G, H, P, S and T)
33222214SpoU rRNA Methylase family
11Phage integrase family
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
2111117PDZ domain
666107944Class II Aldolase and Adducin N-terminal domain
44434423Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55555530Fes/CIP4, and EFC/F-BAR homology domain
33525321IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
23625321Phospholipase D Active site motif
44131417Regulator of G protein signaling domain
33333318GTPase-activator protein for Ras-like GTPase
44444424RasGEF domain
44444424RasGEF N-terminal motif
87788745RhoGAP domain
66666636RhoGEF domain
22222212SPRY domain
33333318RNA polymerase Rpb1, domain 2
111115Guanylate kinase
44444424Gelsolin repeat
769610745UBA/TS-N domain
13131411171381PHD-finger
1111116GGL domain
55555429HECT-domain (ubiquitin-transferase)
11313110Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
33524219Ribonuclease III domain
55242523Region in Clathrin and VPS
22222212RanBP1 domain
11222210PPIC-type PPIASE domain
1111116Zn-finger in Ran binding protein and others
7815814860Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11B-box zinc finger
33333318Poly(ADP-ribose) polymerase catalytic domain
1111116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
172351216117190F-box domain
1111116Elongation factor 1 gamma, conserved domain
33333318Calpain family cysteine protease
22222212Copper fist DNA binding domain
55555530CRAL/TRIO domain
293910371120146BTB/POZ domain
1111116Inhibitor of Apoptosis domain
44444424Voltage gated chloride channel
36224320Caspase domain
6314811547GDSL-like Lipase/Acylhydrolase
21122210Poly-adenylate binding protein, unique domain
1113POLO box duplicated region
211916191519109ABC transporter transmembrane region
3249Integrase core domain
688671146FAD binding domain
45556530Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
2111117HAMP domain
22222212ribosomal L5P family C-terminus
55555530Insulinase (Peptidase family M16)
43333319Dehydrogenase E1 component
1111116Lumazine binding domain
66666636Elongation factor G C-terminus
44434423HMGL-like
23434319DnaJ central domain
33333318Starch binding domain
33232316Ribosomal protein L1p/L10e family
788791049Cation transporting ATPase, C-terminus
899891154Cation transporter/ATPase, N-terminus
1211117dUTPase
45446629Aconitase C-terminal domain
34335321Amino acid kinase family
2111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
14811158763Acyl transferase domain
2111117Urease beta subunit
11Bacterial flagellin C-terminal helical region
78587742Dihydrodipicolinate synthetase family
131531163419128haloacid dehalogenase-like hydrolase
77766639Glycosyl hydrolases family 2
817121171368Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
11114Translation initiation factor IF-3, C-terminal domain
111115Acylphosphatase
1111116Adenylosuccinate synthetase
32232315Asparaginase, N-terminal
1111116Peptidase S24-like
1211128Inorganic pyrophosphatase
151391691476Glycosyl hydrolases family 16
33333318Glycosyl hydrolases family 15
101271091058NADH:flavin oxidoreductase / NADH oxidase family
644544273-hydroxyacyl-CoA dehydrogenase, C-terminal domain
33344320Glycosyl hydrolase family 20, catalytic domain
77564736HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
253617302328159GMC oxidoreductase
33333318Asparagine synthase
88588744Fungal cellulose binding domain
66666636Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
56181930Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
22222212tRNA synthetases class I (R)
45444425XPG N-terminal domain
614911101161Metallo-beta-lactamase superfamily
112116F5/8 type C domain
22222212Choline/Carnitine o-acyltransferase
222129Putative esterase
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
78758641Dioxygenase
33222315CNH domain
32122212Diacylglycerol kinase catalytic domain
78888847Dual specificity phosphatase, catalytic domain
12323213P21-Rho-binding domain
12121213121273PX domain
22222212Ras association (RalGDS/AF-6) domain
66666636UBX domain
44444424VHS domain
1111116Phosphoinositide 3-kinase C2
32222213DAHP synthetase I family
1112911121267Carbon-nitrogen hydrolase
23242316N-acetyltransferase
1111116Prephenate dehydratase
33535322Syntaxin
34545425Pumilio-family RNA binding repeat
66767638Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212Glycoprotease family
1111116Histidinol dehydrogenase
45444425impB/mucB/samB family
112
111115Ribosomal L15
33131314Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal L28 family
111115Ribosomal L29 protein
111115Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
33323317Glycosyl hydrolase family 7
342413Ring hydroxylating alpha subunit (catalytic domain)
2111117RNA pseudouridylate synthase
44444424Histone deacetylase domain
1088881254POT family
1111116PWWP domain
232620222024135SET domain
10131012101267Isochorismatase family
55554529Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
66554531XPG I-region
1111116Acetokinase family
54343423DNA photolyase
11114NlpC/P60 family
212229Nitroreductase family
25233520Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
22122211Acyl CoA binding protein
44444424Cullin family
741159541FAD binding domain
11821081251O-methyltransferase domain
54545427EamA-like transporter family
224
88978848ThiF family
1111116Ribosomal family S4e
56644631Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
55545529Ammonium Transporter Family
75555532Sulfate permease family
1211128MATH domain
33333318Dehydratase family
1111116Transaldolase/Fructose-6-phosphate aldolase
22222212Mechanosensitive ion channel
1212129GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44444323Adaptor complexes medium subunit family
88676742Exonuclease
23222213Dipeptidyl peptidase IV (DPP IV) N-terminal region
47412642NB-ARC domain
12181316121384Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
11114Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
22222212FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
22222212HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
43444423Synaptobrevin
1111116GMP synthase C terminal domain
55LAGLIDADG endonuclease
56555531Adenosine/AMP deaminase
8810710952Oxidoreductase FAD-binding domain
13112412Thioesterase domain
22222212Histidine biosynthesis protein
33333318Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
2147PAS fold
11Diguanylate cyclase, GGDEF domain
22213313Probable molybdopterin binding domain
54444425Sec1 family
22222212GDP dissociation inhibitor
677671144Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
44444424Initiation factor 2 subunit family
22222212Electron transfer flavoprotein domain
111111