PFAM Domains • Clonostachys rosea CBS125111 v1.0
Annotations/GenomesCloro1Myrin1Nieex1Stagr1Trire2Valla1TotalAnnotation Description
PFAMs
14,20010,07810,4068,7426,5076,55256,485
22157 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
645150434433285ATPase family associated with various cellular activities (AAA)
937265594636371ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
14141314141483Elongation factor Tu GTP binding domain
111010109959Helix-loop-helix DNA-binding domain
84223120Hsp20/alpha crystallin family
77877743Hsp70 protein
99978951KH domain
1111116SH2 domain
222121202421129SH3 domain
1210101071059Actin
225115781016323605Ankyrin repeat
53112113PAN domain
87777743ADP-ribosylation factor family
15142511161091Eukaryotic aspartyl protease
44444424Cyclic nucleotide-binding domain
1111116Cytochrome c
12222312Double-stranded RNA binding motif
191716192017108EF hand
11111164Fe-4S binding domain
32231213Fibronectin type III domain
221229Globin
2515211810796Glutathione S-transferase, C-terminal domain
1211117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
139875648Homeodomain
52322216lactate/malate dehydrogenase, NAD binding domain
55444426Myosin head (motor domain)
1811841491096937729Cytochrome P450
179131116108106116756Protein kinase domain
41172819149128Pyridine nucleotide-disulphide oxidoreductase
342826252324160Ras family
18201416131394Response regulator receiver domain
43442118RNase H
606058575958352RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
22212211Copper/zinc superoxide dismutase (SODC)
22222212Iron/manganese superoxide dismutases, alpha-hairpin domain
52342415157147Subtilase family
19777127937644614Sugar (and other) transporter
15151512111381Thioredoxin
215641138Trypsin
55446428Tubulin/FtsZ family, GTPase domain
136452333von Willebrand factor type A domain
967768626744414Zinc finger, C2H2 type
374037403236222Zinc finger, C3HC4 type (RING finger)
67675334Zinc knuckle
22222212Protein-tyrosine phosphatase
309182264132118581,063short chain dehydrogenase
165106138735335570Zinc-binding dehydrogenase
65676636Thiolase, N-terminal domain
435639271710192Beta-ketoacyl synthase, N-terminal domain
476555322Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
1111127Enolase, C-terminal TIM barrel domain
123Cytochrome C and Quinol oxidase polypeptide I
1091087953Glutamine amidotransferase class-I
10101010101060TCP-1/cpn60 chaperonin family
56452325Glutamine synthetase, catalytic domain
22222212Triosephosphate isomerase
271917211611111E1-E2 ATPase
89797949Core histone H2A/H2B/H3/H4
86974337Alpha amylase, catalytic domain
1322210Phorbol esters/diacylglycerol binding domain (C1 domain)
9101298957Bacterial transferase hexapeptide (six repeats)
44436324tRNA synthetases class I (I, L, M and V)
88767743Cyclin, N-terminal domain
38204316128137Carboxylesterase family
44444424DNA polymerase family B
55544427ATP synthase subunit C
76736231Peroxidase
261221128281Beta-lactamase
23221111C-5 cytosine-specific DNA methylase
373125252728173Calcineurin-like phosphoesterase
1681394252Cellulase (glycosyl hydrolase family 5)
77878744tRNA synthetases class II (D, K and N)
504241393539246Mitochondrial carrier protein
11recA bacterial DNA recombination protein
423120171615141Aminotransferase class I and II
12109108958Phosphoribosyl transferase domain
10101012101062Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1111116Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
13131312141277C2 domain
181818181919110PH domain
1312131311971bZIP transcription factor
813040222014207Aldehyde dehydrogenase family
8143144292811921332,163Fungal Zn(2)-Cys(6) binuclear cluster domain
352526252117149Cytochrome b5-like Heme/Steroid binding domain
34224217Oxidoreductase molybdopterin binding domain
301917211411112Oxidoreductase NAD-binding domain
252723222521143SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
212120192019120Ubiquitin-conjugating enzyme
1191277551Isocitrate/isopropylmalate dehydrogenase
22222111Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
1442112Chitin recognition protein
125413227Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
56753127Cupin
42332317Annexin
221117Eukaryotic-type carbonic anhydrase
22116Chalcone and stilbene synthases, N-terminal domain
543333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
64337124Catalase
2211118Disintegrin
422210UDP-glucoronosyl and UDP-glucosyl transferase
191011128666Aminotransferase class-III
22222212Ribosomal protein S19
2111117DNA gyrase B
129954342Thiamine pyrophosphate enzyme, central domain
74743328Lyase
22222111Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
2226Sodium:neurotransmitter symporter family
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
2211118Orotidine 5'-phosphate decarboxylase / HUMPS family
11ATP:guanido phosphotransferase, C-terminal catalytic domain
1111116Indole-3-glycerol phosphate synthase
122218Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
12111111111167Kinesin motor domain
282726242625156DnaJ domain
14141414141484Proteasome subunit
77547333Major intrinsic protein
1111116ATP synthase
8235220Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
1111116Profilin
1111116Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
1289781054Ubiquitin family
55543527Cofilin/tropomyosin-type actin-binding protein
2222221214-3-3 protein
78553230Alkaline phosphatase
1716494252Zinc carboxypeptidase
634154282717230Aldo/keto reductase family
15191514141390Myb-like DNA-binding domain
44444424Forkhead domain
7336120Glycosyl hydrolases family 32 N-terminal domain
1111116Ribosomal protein L16p/L10e
22221211Ribosomal protein S14p/S29e
43333319FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
22222111
1695117654Flavodoxin
11Protamine P1
1111116Calreticulin family
2010572448Common central domain of tyrosinase
1210873646Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
413940464937252DEAD/DEAH box helicase
767772727568440Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
12222211Ribosomal protein L5
109856644Pyridoxal-dependent decarboxylase conserved domain
44332218Citrate synthase, C-terminal domain
65555531GHMP kinases N terminal domain
108665641Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
21121215121082Pyridoxal-phosphate dependent enzyme
221914161514100NUDIX domain
96564636pfkB family carbohydrate kinase
163924135Glycosyl hydrolases family 28
3115Luciferase-like monooxygenase
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
1714121261172Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
2114Lipoxygenase
44444424ATP synthase alpha/beta chain, C terminal domain
55555530Calponin homology (CH) domain
66564431Glutamine amidotransferases class-II
22222212Ribosomal protein S15
134'Cold-shock' DNA-binding domain
1111116Thaumatin family
22222212Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22232213SRF-type transcription factor (DNA-binding and dimerisation domain)
88686642GATA zinc finger
1043839283321263Amino acid permease
115561331Prolyl oligopeptidase family
22212211Ribosomal protein L30p/L7e
9107104747Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
95864436Aconitase family (aconitate hydratase)
5334116Glycosyl hydrolase family 10
43341217Glycosyl hydrolases family 17
22122211Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
11Tetraspanin family
1111116Ribosomal protein S10p/S20e
53333320Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
64363325Polyprenyl synthetase
46544427Hexokinase
131111119560Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
146464337Rieske [2Fe-2S] domain
11Phytochrome region
1311786752Biotin-requiring enzyme
1111116Phosphofructokinase
22222212Ribosomal protein S17
31221110Hydroxymethylglutaryl-coenzyme A reductase
44343321FGGY family of carbohydrate kinases, N-terminal domain
1113Sodium:dicarboxylate symporter family
24121310121182Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
781066542Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
1086171648Chromo (CHRromatin Organisation MOdifier) domain
44444424Phosphatidylinositol-specific phospholipase C, Y domain
78566537Phosphatidylinositol-specific phospholipase C, X domain
2471695465D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
32222213Malic enzyme, N-terminal domain
112PEP-utilising enzyme, mobile domain
11111166-phosphogluconate dehydrogenase, C-terminal domain
1161248445Multicopper oxidase
179111110866WW domain
1111116Ribosomal RNA adenine dimethylase
11114Yeast PIR protein repeat
121119114132123103712WD domain, G-beta repeat
84565331Heavy-metal-associated domain
34334320Adenylate kinase
22222212Phosphoglucomutase/phosphomannomutase, C-terminal domain
1211229Ribosomal protein S8
2221119Ribosomal protein S11
55334323LIM domain
22Matrixin
1211117Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
11
23342216chorismate binding enzyme
3333331860s Acidic ribosomal protein
65554429Prenyltransferase and squalene oxidase repeat
66655533Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
88787745Bromodomain
211516118879Acyl-CoA dehydrogenase, C-terminal domain
14141414151485Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
42423217Ribonuclease T2 family
33333318HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
1791045348Serine carboxypeptidase
88888848Phosphatidylinositol 3- and 4-kinase
62432118Transketolase, thiamine diphosphate binding domain
2632316Glycosyl hydrolases family 11
64554327Inositol monophosphatase family
44453424Glutaredoxin
102752228Isocitrate lyase family
33222214Serine hydroxymethyltransferase
61512217Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
23236319KOW motif
11Ribosomal protein L34
33332317RF-1 domain
76225123Sodium:solute symporter family
1211117Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
65766636Protein phosphatase 2C
22333215Nucleotidyl transferase
53514119Carbonic anhydrase
2111218Phosphoribulokinase / Uridine kinase family
1010786445Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
76643127Arginase family
67666637MCM P-loop domain
22221211Squalene/phytoene synthase
112Bacterial extracellular solute-binding proteins, family 5 Middle
1410101081163FHA domain
937583723740400AMP-binding enzyme
77653331G-protein alpha subunit
87877643HMG (high mobility group) box
1516111310974His Kinase A (phospho-acceptor) domain
22223213Armadillo/beta-catenin-like repeat
363231322423178Tetratricopeptide repeat
55555429Ion transport protein
2111117DNA gyrase/topoisomerase IV, subunit A
1112911111165BRCA1 C Terminus (BRCT) domain
87876440Glycosyl transferases group 1
34523320Glycosyl transferase family 2
1111318SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1442424Pectate lyase
3232111ribonuclease
1111116Urease, gamma subunit
55535528CoA-ligase
435751391917226Phosphopantetheine attachment site
43333319Formyl transferase
1391098857Metallopeptidase family M24
14171615161391Leucine Rich Repeat
1025778422219320alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
44344423PB1 domain
22222212Staphylococcal nuclease homologue
10101010101060Rab-GTPase-TBC domain
1111116Tudor domain
2111117WH1 domain
55635428Zinc finger, ZZ type
1111116HRDC domain
89899851CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
46435527S1 RNA binding domain
1111116HIUase/Transthyretin family
44243320AhpC/TSA family
44454425tRNA synthetases class I (W and Y)
1113UvrD/REP helicase N-terminal domain
88394436Rhodanese-like domain
32222213Universal stress protein family
605161374027276Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
910898953tRNA synthetase class II core domain (G, H, P, S and T)
1111116SpoU rRNA Methylase family
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
11114PDZ domain
222633440Class II Aldolase and Adducin N-terminal domain
11Adenoviral fibre protein (repeat/shaft region)
34444322Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55423524Fes/CIP4, and EFC/F-BAR homology domain
45445426IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
55655430Phospholipase D Active site motif
1111116Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
44444424RasGEF domain
44442422RasGEF N-terminal motif
89888849RhoGAP domain
66765636RhoGEF domain
33333318SPRY domain
33333318RNA polymerase Rpb1, domain 2
33243318Guanylate kinase
54454426Gelsolin repeat
610687744UBA/TS-N domain
15161614151692PHD-finger
1111116GGL domain
66666636HECT-domain (ubiquitin-transferase)
12242112Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
44444424Ribonuclease III domain
22232213Region in Clathrin and VPS
22333316RanBP1 domain
22222212PPIC-type PPIASE domain
13232213Zn-finger in Ran binding protein and others
18171614151494Zinc finger C-x8-C-x5-C-x3-H type (and similar)
53211214Poly(ADP-ribose) polymerase catalytic domain
11114Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
1646047455136403F-box domain
1111116Elongation factor 1 gamma, conserved domain
94333224Calpain family cysteine protease
32222213Copper fist DNA binding domain
96885642CRAL/TRIO domain
158695649BTB/POZ domain
31414215Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
34333319Voltage gated chloride channel
75252223Caspase domain
301513125277GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
11POLO box duplicated region
494037302518199ABC transporter transmembrane region
169596550FAD binding domain
27282831108132Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222212ribosomal L5P family C-terminus
56665533Insulinase (Peptidase family M16)
54333321Dehydrogenase E1 component
1111116Lumazine binding domain
66665635Elongation factor G C-terminus
96554433HMGL-like
44444424DnaJ central domain
22Sulfotransferase domain
1312119Starch binding domain
22232213Ribosomal protein L1p/L10e family
151110139664Cation transporting ATPase, C-terminus
1813101310670Cation transporter/ATPase, N-terminus
1111116dUTPase
95864436Aconitase C-terminal domain
34333319Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
44513829179188Acyl transferase domain
1111116Urease beta subunit
2181196459Dihydrodipicolinate synthetase family
523936393129226haloacid dehalogenase-like hydrolase
164997550Glycosyl hydrolases family 2
131916241912103Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
112Translation initiation factor IF-3, C-terminal domain
11114Acylphosphatase
2122119Adenylosuccinate synthetase
23121110Asparaginase, N-terminal
32212212Peptidase S24-like
22222111Inorganic pyrophosphatase
2016171513990Glycosyl hydrolases family 16
23332215Glycosyl hydrolases family 15
161312138264NADH:flavin oxidoreductase / NADH oxidase family
421321133-hydroxyacyl-CoA dehydrogenase, C-terminal domain
43323116Glycosyl hydrolase family 20, catalytic domain
55455630HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
38292418125126GMC oxidoreductase
34322216Asparagine synthase
181641014264Fungal cellulose binding domain
55555530Septin
1211117EF-1 guanine nucleotide exchange domain
2121118Homoserine dehydrogenase
5553119Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
35533322tRNA synthetases class I (E and Q), catalytic domain
12311210tRNA synthetases class I (R)
44453323XPG N-terminal domain
187181110670Metallo-beta-lactamase superfamily
3351214F5/8 type C domain
43342218Choline/Carnitine o-acyltransferase
2211118Putative esterase
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
21312110Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
156924238Dioxygenase
32232315CNH domain
1112117Diacylglycerol kinase catalytic domain
89674640Dual specificity phosphatase, catalytic domain
44
33323216P21-Rho-binding domain
12131212121374PX domain
33333318Ras association (RalGDS/AF-6) domain
54554427UBX domain
44444424VHS domain
1111116Phosphoinositide 3-kinase C2
22232213DAHP synthetase I family
191010812665Carbon-nitrogen hydrolase
5242114N-acetyltransferase
1111116Prephenate dehydratase
44454526Syntaxin
55555530Pumilio-family RNA binding repeat
66665635Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212Glycoprotease family
3121119Histidinol dehydrogenase
54444425impB/mucB/samB family
1111116
1111116Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal L28 family
1111116Ribosomal L29 protein
11114Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
6432217Glycosyl hydrolase family 7
1111116RNA pseudouridylate synthase
44444424Histone deacetylase domain
86233224POT family
1111116PWWP domain
1813101591176SET domain
13101667557Isochorismatase family
34322216Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
44444424XPG I-region
1111116Acetokinase family
33333419DNA photolyase
11NlpC/P60 family
11114Cation-independent mannose-6-phosphate receptor repeat
12115Nitroreductase family
29518452687Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
111115Ribosomal protein S16
22222212Acyl CoA binding protein
44443322Cullin family
26101272764FAD binding domain
23201673574O-methyltransferase domain
46441322EamA-like transporter family
1111116
88888848ThiF family
1111116Ribosomal family S4e
1651372245Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
53452322Ammonium Transporter Family
66665534Sulfate permease family
1111116MATH domain
73443223Dehydratase family
42532218Transaldolase/Fructose-6-phosphate aldolase
22222212Mechanosensitive ion channel
1211218GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
34443422Adaptor complexes medium subunit family
77587539Exonuclease
63121114Dipeptidyl peptidase IV (DPP IV) N-terminal region
3013171513896Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
11Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
1111116FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
1213119HCO3- transporter family
23222213Nucleosome assembly protein (NAP)
44444424Synaptobrevin
1111116GMP synthase C terminal domain
1121117Phage lysozyme
911657341Adenosine/AMP deaminase
139895549Oxidoreductase FAD-binding domain
8941527Thioesterase domain
22222212Histidine biosynthesis protein
33334319Glycosyltransferase family 20
22222212UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
1432111PAS fold
11Diguanylate cyclase, GGDEF domain
11
22222212Probable molybdopterin binding domain
44444424Sec1 family
22222212GDP dissociation inhibitor
77572634Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
45545427Initiation factor 2 subunit family
11PQQ enzyme repeat
22221211Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111318GTP1/OBG
33334218Gamma-glutamyltranspeptidase
1111116GrpE
43322216TatD related DNase
1111116Inhibitor of apoptosis-promoting Bax1