PFAM Domains • Ceratobasidium sp. (anastomosis group I, AG-I) v1.0
Annotations/GenomesBotbo1CerAGIClaPMI390Hydru2Rhiso1Tulca1TotalAnnotation Description
PFAMs
9,0059,7018,4786,86210,88910,44855,383
117 transmembrane receptor (rhodopsin family)
424742434145260ATPase family associated with various cellular activities (AAA)
457269546540345ABC transporter
44444525ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
19141717161598Elongation factor Tu GTP binding domain
911169121067Helix-loop-helix DNA-binding domain
56424627Hsp20/alpha crystallin family
173212151047133Hsp70 protein
910787849KH domain
111115SH2 domain
242825232940169SH3 domain
17121510111075Actin
1491846142131279Ankyrin repeat
814789753ADP-ribosylation factor family
313142303440208Eukaryotic aspartyl protease
43333218Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
1111217Cytochrome c
1355175752Double-stranded RNA binding motif
202114171926117EF hand
11112284Fe-4S binding domain
111216Fibronectin type III domain
11Globin
232097241598Glutathione S-transferase, C-terminal domain
1211128Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
9110Hemopexin
12118711958Homeodomain
111115Laminin EGF domain
322242235lactate/malate dehydrogenase, NAD binding domain
55655733Myosin head (motor domain)
1581808345206129801Cytochrome P450
3793952921812031,0772,527Protein kinase domain
1418211314989Pyridine nucleotide-disulphide oxidoreductase
284135262531186Ras family
1315157191685Response regulator receiver domain
81423314567RNase H
686862676367395RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
24081411Reverse transcriptase (RNA-dependent DNA polymerase)
11327Copper/zinc superoxide dismutase (SODC)
32323316Iron/manganese superoxide dismutases, alpha-hairpin domain
1536683416115Subtilase family
224728134627183Sugar (and other) transporter
1214118131472Thioredoxin
65754431Tubulin/FtsZ family, GTPase domain
6737831von Willebrand factor type A domain
817552525871389Zinc finger, C2H2 type
616553455756337Zinc finger, C3HC4 type (RING finger)
17206282519331Zinc knuckle
32332215Protein-tyrosine phosphatase
719395487749433short chain dehydrogenase
405448206228252Zinc-binding dehydrogenase
58449636Thiolase, N-terminal domain
81111214Beta-ketoacyl synthase, N-terminal domain
443444232Fe-2S iron-sulfur cluster binding domain
415Papain family cysteine protease
1112117Enolase, C-terminal TIM barrel domain
98888647Glutamine amidotransferase class-I
11101012171272TCP-1/cpn60 chaperonin family
611343229Glutamine synthetase, catalytic domain
1111127Triosephosphate isomerase
12151013181078E1-E2 ATPase
12141815132092Core histone H2A/H2B/H3/H4
112Copper binding proteins, plastocyanin/azurin family
415910171267Alpha amylase, catalytic domain
55535427Phorbol esters/diacylglycerol binding domain (C1 domain)
44325321Bacterial transferase hexapeptide (six repeats)
43333319tRNA synthetases class I (I, L, M and V)
15171011141077Cyclin, N-terminal domain
9311912256102Carboxylesterase family
44455628DNA polymerase family B
34334522ATP synthase subunit C
1111217Peroxidase
12174336Beta-lactamase
62522421C-5 cytosine-specific DNA methylase
312631242428164Calcineurin-like phosphoesterase
11162441832105Cellulase (glycosyl hydrolase family 5)
55656532tRNA synthetases class II (D, K and N)
374035333939223Mitochondrial carrier protein
12161615161590Aminotransferase class I and II
57777639Phosphoribosyl transferase domain
14141515151790Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22121210Ribosomal protein S4/S9 N-terminal domain
23321213Ribosomal protein S12/S23
123Bacterial regulatory helix-turn-helix proteins, AraC family
21112310Chaperonin 10 Kd subunit
451113121111103C2 domain
211817172317113PH domain
55395431bZIP transcription factor
211817242519124Aldehyde dehydrogenase family
1501181436316541680Fungal Zn(2)-Cys(6) binuclear cluster domain
262632262318151Cytochrome b5-like Heme/Steroid binding domain
21115Oxidoreductase molybdopterin binding domain
11148717663Oxidoreductase NAD-binding domain
212124262230144SNF2 family N-terminal domain
22223213Ribosomal protein S7p/S5e
232021202222128Ubiquitin-conjugating enzyme
65555632Isocitrate/isopropylmalate dehydrogenase
23222112Ribosomal Proteins L2, RNA binding domain
22233214Hsp90 protein
22222919Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111127Dihydrofolate reductase
314Chitin recognition protein
7526121Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
1201132Cupin
333334192-oxoacid dehydrogenases acyltransferase (catalytic domain)
37292225Catalase
111115Disintegrin
15318532UDP-glucoronosyl and UDP-glucosyl transferase
65556633Aminotransferase class-III
22222313Ribosomal protein S19
1111116DNA gyrase B
22312111Thiamine pyrophosphate enzyme, central domain
33352319Lyase
23222213Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111127Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
11114Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
41141112Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
111197111362Kinesin motor domain
272833272629170DnaJ domain
14141524131393Proteasome subunit
196877855Major intrinsic protein
1111116ATP synthase
4113110Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
111126Profilin
22222212Ribosomal protein L22p/L17e
22223213Ribosomal protein L14p/L23e
172616182524126Ubiquitin family
65565734Cofilin/tropomyosin-type actin-binding protein
131111814-3-3 protein
2511615Alkaline phosphatase
2114210Zinc carboxypeptidase
394751226455278Aldo/keto reductase family
1415111013972Myb-like DNA-binding domain
544441132Forkhead domain
4116Glycosyl hydrolases family 32 N-terminal domain
1111116Ribosomal protein L16p/L10e
22221211Ribosomal protein S14p/S29e
54674733FKBP-type peptidyl-prolyl cis-trans isomerase
111115Glutathione peroxidase
22222111
896314848Flavodoxin
22Tropomyosin
11111510Calreticulin family
5163336467Common central domain of tyrosinase
561446641Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
587845505059340DEAD/DEAH box helicase
10310976838597553Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
2111128EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
1211128Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111127Ribosomal protein L5
75759235Pyridoxal-dependent decarboxylase conserved domain
33333318Citrate synthase, C-terminal domain
55545529GHMP kinases N terminal domain
55565531Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
101111910960Pyridoxal-phosphate dependent enzyme
12151314151584NUDIX domain
55456429pfkB family carbohydrate kinase
2241832783Glycosyl hydrolases family 28
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
10141116121376Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
11Lipoxygenase
44454425ATP synthase alpha/beta chain, C terminal domain
44444424Calponin homology (CH) domain
65595535Glutamine amidotransferases class-II
22222212Ribosomal protein S15
628'Cold-shock' DNA-binding domain
4917116754Thaumatin family
1112117Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22222212SRF-type transcription factor (DNA-binding and dimerisation domain)
914910111063GATA zinc finger
311720272122138Amino acid permease
64635630Prolyl oligopeptidase family
21231110Ribosomal protein L30p/L7e
1286812753Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44445526Aconitase family (aconitate hydratase)
11144111353Glycosyl hydrolase family 10
51122112Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
21221311Nucleoside diphosphate kinase
11215Tetraspanin family
1122118Ribosomal protein S10p/S20e
11621213Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
13112210Carbohydrate phosphorylase
1111127SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22223213Ribosomal protein L6
433125330Polyprenyl synthetase
32222213Hexokinase
86768843Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
35435424Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
213Phytochrome region
77777843Biotin-requiring enzyme
1111116Phosphofructokinase
23212313Ribosomal protein S17
1111127Hydroxymethylglutaryl-coenzyme A reductase
24333419FGGY family of carbohydrate kinases, N-terminal domain
910141811769Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
67855536Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
774430110333Chromo (CHRromatin Organisation MOdifier) domain
13213111Phosphatidylinositol-specific phospholipase C, Y domain
24313114Phosphatidylinositol-specific phospholipase C, X domain
710757642D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22313415Malic enzyme, N-terminal domain
11111166-phosphogluconate dehydrogenase, C-terminal domain
51931424469Multicopper oxidase
149107101363WW domain
21223212Ribosomal RNA adenine dimethylase
1602021951673142321,270WD domain, G-beta repeat
33346221Heavy-metal-associated domain
34333319Adenylate kinase
22222212Phosphoglucomutase/phosphomannomutase, C-terminal domain
1221118Ribosomal protein S8
22112210Ribosomal protein S11
976861147LIM domain
42322215Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
22322112chorismate binding enzyme
3463352460s Acidic ribosomal protein
55444426Prenyltransferase and squalene oxidase repeat
76766638Protein kinase C terminal domain
1111116Single-strand binding protein family
111115S-adenosylmethionine synthetase, N-terminal domain
1114101491068Bromodomain
119171191067Acyl-CoA dehydrogenase, C-terminal domain
15161615171796Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
36514928Ribonuclease T2 family
11Gonadotropin-releasing hormone
654452044HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1211117Urease alpha-subunit, N-terminal domain
71517710460Serine carboxypeptidase
99789850Phosphatidylinositol 3- and 4-kinase
1111116Transketolase, thiamine diphosphate binding domain
21214Glycosyl hydrolases family 11
311117WHEP-TRS domain
22322213Inositol monophosphatase family
55545428Glutaredoxin
324226542Isocitrate lyase family
4111119Serine hydroxymethyltransferase
2211219Iron-containing alcohol dehydrogenase
22212211Ribosomal protein L10
55245324KOW motif
211116Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
43424219RF-1 domain
1111116Sodium:solute symporter family
11114Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
2111117IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
77666537Protein phosphatase 2C
32352217Nucleotidyl transferase
63247325Carbonic anhydrase
111115Phosphoribulokinase / Uridine kinase family
9917157764Fatty acid desaturase
66865839MutS domain V
1111116Delta-aminolevulinic acid dehydratase
22223112Arginase family
66697640MCM P-loop domain
1121117Squalene/phytoene synthase
81117912966FHA domain
413235422917196AMP-binding enzyme
7871082262G-protein alpha subunit
131288141166HMG (high mobility group) box
11Cytochrome c oxidase subunit III
81210415756His Kinase A (phospho-acceptor) domain
542354160Armadillo/beta-catenin-like repeat
4554302747474677Tetratricopeptide repeat
33233216Ion transport protein
1111127DNA gyrase/topoisomerase IV, subunit A
10910991057BRCA1 C Terminus (BRCT) domain
56678739Glycosyl transferases group 1
54448530Glycosyl transferase family 2
66SAM domain (Sterile alpha motif)
32323417linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
41621281263Pectate lyase
23611ribonuclease
1211117Urease, gamma subunit
53334321CoA-ligase
1410645241Phosphopantetheine attachment site
23223113Formyl transferase
81191091057Metallopeptidase family M24
14141514191591Leucine Rich Repeat
406359284721258alpha/beta hydrolase fold
33333419RNA polymerase Rpb2, domain 6
59567739PB1 domain
42223215Staphylococcal nuclease homologue
91089101056Rab-GTPase-TBC domain
1111116Tudor domain
31112210WH1 domain
9917614661Zinc finger, ZZ type
1111127HRDC domain
989681050CBS domain
23223214Ribosomal protein L13
22221211Ribosomal protein L4/L1 family
1111116Clp protease
45325423S1 RNA binding domain
1111116HIUase/Transthyretin family
35456730AhpC/TSA family
54444526tRNA synthetases class I (W and Y)
13313112UvrD/REP helicase N-terminal domain
54473427Rhodanese-like domain
22223213Universal stress protein family
193118192925141Acetyltransferase (GNAT) family
111115SecE/Sec61-gamma subunits of protein translocation complex
111115C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
67677639tRNA synthetase class II core domain (G, H, P, S and T)
123Phage integrase family
23232315Tetrapyrrole (Corrin/Porphyrin) Methylases
1111138Glycosyl transferase family, a/b domain
11431111Class II Aldolase and Adducin N-terminal domain
33324419Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
44454728Fes/CIP4, and EFC/F-BAR homology domain
54643325IQ calmodulin-binding motif
32222112Phosphoinositide 3-kinase family, accessory domain (PIK domain)
64535427Phospholipase D Active site motif
1111116Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
78398742RasGEF domain
88598745RasGEF N-terminal motif
16121214121682RhoGAP domain
16151312141383RhoGEF domain
33333318SPRY domain
33333318RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
35332420Gelsolin repeat
89779949UBA/TS-N domain
192016161920110PHD-finger
11114GGL domain
444274447HECT-domain (ubiquitin-transferase)
31223213Helix-hairpin-helix motif
2211129MSP (Major sperm protein) domain
165984749Ribonuclease III domain
22322516Region in Clathrin and VPS
33333419RanBP1 domain
22212211PPIC-type PPIASE domain
23213213Zn-finger in Ran binding protein and others
262119242733150Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1111116B-box zinc finger
521123445Poly(ADP-ribose) polymerase catalytic domain
21322111Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
26615736568912721,219F-box domain
21116213Elongation factor 1 gamma, conserved domain
26448630Calpain family cysteine protease
22212211Copper fist DNA binding domain
46765331CRAL/TRIO domain
184614122325138BTB/POZ domain
17146131556Ricin-type beta-trefoil lectin domain
1111127Inhibitor of Apoptosis domain
33333419Voltage gated chloride channel
1157124011122Caspase domain
623165161783GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
243438163019161ABC transporter transmembrane region
93293341Integrase core domain
76337329FAD binding domain
622212Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222212ribosomal L5P family C-terminus
65555430Insulinase (Peptidase family M16)
44445425Dehydrogenase E1 component
1111116Lumazine binding domain
66966437Elongation factor G C-terminus
44544425HMGL-like
44444424DnaJ central domain
47315222Starch binding domain
22222313Ribosomal protein L1p/L10e family
67446633Cation transporting ATPase, C-terminus
710667541Cation transporter/ATPase, N-terminus
111115dUTPase
45445426Aconitase C-terminal domain
34333420Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
61261420Acyl transferase domain
1211117Urease beta subunit
22213212Dihydrodipicolinate synthetase family
273324243224164haloacid dehalogenase-like hydrolase
22312515Glycosyl hydrolases family 2
13179715465Glycosyl hydrolases family 18
1112117Proliferating cell nuclear antigen, N-terminal domain
123Acylphosphatase
1111116Adenylosuccinate synthetase
1111138Asparaginase, N-terminal
32323215Peptidase S24-like
1111116Inorganic pyrophosphatase
53644224Glycosyl hydrolases family 16
56425527Glycosyl hydrolases family 15
920131035996NADH:flavin oxidoreductase / NADH oxidase family
322222133-hydroxyacyl-CoA dehydrogenase, C-terminal domain
2111117Glycosyl hydrolase family 20, catalytic domain
44364425HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
272736213813162GMC oxidoreductase
32222213Asparagine synthase
296157138110296Fungal cellulose binding domain
55565531Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
103136234Flavin-binding monooxygenase-like
43333319tRNA synthetases class I (E and Q), catalytic domain
22111815tRNA synthetases class I (R)
65645430XPG N-terminal domain
712889953Metallo-beta-lactamase superfamily
11125F5/8 type C domain
64485532Choline/Carnitine o-acyltransferase
1111116Putative esterase
33113213Glycosyl hydrolase family 9
1111116Ferrochelatase
42222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1113129Electron transfer flavoprotein FAD-binding domain
43333420RNB domain
284112431Dioxygenase
56838434CNH domain
22212211Diacylglycerol kinase catalytic domain
108599546Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
44334927P21-Rho-binding domain
14141414141383PX domain
54323421Ras association (RalGDS/AF-6) domain
45443626UBX domain
56445630VHS domain
1111116Phosphoinositide 3-kinase C2
22223213DAHP synthetase I family
54555428Carbon-nitrogen hydrolase
2136N-acetyltransferase
1111127Prephenate dehydratase
34445222Syntaxin
57555532Pumilio-family RNA binding repeat
67666637Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111217Pterin binding enzyme
1111116ER lumen protein retaining receptor
32222213Glycoprotease family
1111116Histidinol dehydrogenase
33333419impB/mucB/samB family
11PPE family
1112117
1111116Ribosomal L15
2111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
111115Ribosomal L28 family
11191114Ribosomal L29 protein
1111116Ribosomal L39 protein
1111116Ribosomal S17
111115Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
71951132772Glycosyl hydrolase family 7
22232213RNA pseudouridylate synthase
67667941Histone deacetylase domain
42114214POT family
22132111PWWP domain
22131310101987SET domain
43333218Isochorismatase family
23222213Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
55656633XPG I-region
1111116Acetokinase family
14213112DNA photolyase
111115Cation-independent mannose-6-phosphate receptor repeat
11114Cytosol aminopeptidase family, catalytic domain
11Sulfatase
1121166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
33233317Acyl CoA binding protein
45656733Cullin family
1111116Elongation factor TS
65224221FAD binding domain
9312O-methyltransferase domain
24413115EamA-like transporter family
26223217
89779949ThiF family
1111116Ribosomal family S4e
1311814Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
324122326Ammonium Transporter Family
33437323Sulfate permease family
1211218MATH domain
22222111Dehydratase family
22212312Transaldolase/Fructose-6-phosphate aldolase
34313317Mechanosensitive ion channel
1111116GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
48445530Adaptor complexes medium subunit family
10913891160Exonuclease
2111218Dipeptidyl peptidase IV (DPP IV) N-terminal region
11NB-ARC domain
7141112111368Glycosyl hydrolase family 3 N terminal domain
111115Ribosomal protein L44
1111116DNA-dependent RNA polymerase
1114119Glycosyl transferase family 4
1111228HCO3- transporter family
24224418Nucleosome assembly protein (NAP)
55444527Synaptobrevin
1111116GMP synthase C terminal domain
34235421Adenosine/AMP deaminase
36545225Oxidoreductase FAD-binding domain
516Thioesterase domain
22262216Histidine biosynthesis protein
33333419Glycosyltransferase family 20
14141112UDP-glucose/GDP-mannose dehydrogenase family, central domain
22232213Carbamoyl-phosphate synthase small chain, CPSase domain
2432112PAS fold
11Diguanylate cyclase, GGDEF domain
22224113Probable molybdopterin binding domain
44444626Sec1 family
22222212GDP dissociation inhibitor
698612546Sodium/hydrogen exchanger family
22213212RNA polymerase Rpb3/RpoA insert domain
44444323Initiation factor 2 subunit family
111115PQQ enzyme repeat
22222111Electron transfer flavoprotein domain
1211218Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111217GTP1/OBG
23355220Gamma-glutamyltranspeptidase
112Ribosomal L40e family
1111116GrpE
33434320TatD related DNase
1111116Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
744621033Dynamin central region
322122126-O-methylguanine DNA methyltransferase, DNA binding domain
22232213Carboxyl transferase domain
82524425UbiA prenyltransferase family
11DegT/DnrJ/EryC1/StrS aminotransferase family
45337224Endoribonuclease L-PSP
11114Phosphorylase superfamily
1111116Mannose-6-phosphate isomerase
8764101146Cys/Met metabolism PLP-dependent enzyme
74728634Glycosyl hydrolases family 31
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