PFAM Domains • Sordaria humana MPI-SDFR-AT-0083 v1.0
Annotations/GenomesGelte1Neucr2Neudi1Neuhi1Sorbr1Sorhu1TotalAnnotation Description
PFAMs
9,2958,0345,6158,6629,0259,23249,863
222177 transmembrane receptor (Secretin family)
434334414245248ATPase family associated with various cellular activities (AAA)
383734353638218ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
16181315151592Elongation factor Tu GTP binding domain
13201413131184Helix-loop-helix DNA-binding domain
33233317Hsp20/alpha crystallin family
128710121362Hsp70 protein
713988853KH domain
112SH2 domain
142623131314103SH3 domain
1111710101059Actin
175340141318155Ankyrin repeat
111115PAN domain
79777744ADP-ribosylation factor family
191917181819110Eukaryotic aspartyl protease
36434424Cyclic nucleotide-binding domain
11Beta/Gamma crystallin
1111116Cytochrome c
111115Double-stranded RNA binding motif
3182133351EF hand
3144Fe-4S binding domain
13311110Fibronectin type III domain
22222111Globin
56445327Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
57555532Homeodomain
34333521lactate/malate dehydrogenase, NAD binding domain
45444425Myosin head (motor domain)
624141406367314Cytochrome P450
11613493111119142715Protein kinase domain
12131112111170Pyridine nucleotide-disulphide oxidoreductase
282824272827162Ras family
14171414141487Response regulator receiver domain
42164118RNase H
577462535455355RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
11Reverse transcriptase (RNA-dependent DNA polymerase)
43244421Copper/zinc superoxide dismutase (SODC)
23222213Iron/manganese superoxide dismutases, alpha-hairpin domain
15879141568Subtilase family
453858444342270Sugar (and other) transporter
1111911111164Thioredoxin
1113Trypsin
45444425Tubulin/FtsZ family, GTPase domain
16311214von Willebrand factor type A domain
196474181918212Zinc finger, C2H2 type
64235648101Zinc finger, C3HC4 type (RING finger)
612562839Zinc knuckle
22222212Protein-tyrosine phosphatase
646653545862357short chain dehydrogenase
293332282828178Zinc-binding dehydrogenase
55655531Thiolase, N-terminal domain
12119991262Beta-ketoacyl synthase, N-terminal domain
365333232Fe-2S iron-sulfur cluster binding domain
23222213Enolase, C-terminal TIM barrel domain
11Cytochrome C oxidase subunit II, periplasmic domain
1011999957Glutamine amidotransferase class-I
10101010101060TCP-1/cpn60 chaperonin family
45444425Glutamine synthetase, catalytic domain
22222212Triosephosphate isomerase
18131318181898E1-E2 ATPase
910778849Core histone H2A/H2B/H3/H4
1010999956Alpha amylase, catalytic domain
2211118Phorbol esters/diacylglycerol binding domain (C1 domain)
898810851Bacterial transferase hexapeptide (six repeats)
53755530tRNA synthetases class I (I, L, M and V)
87888847Cyclin, N-terminal domain
91199101159Carboxylesterase family
44445425DNA polymerase family B
44444525ATP synthase subunit C
36333321Peroxidase
1162561141Beta-lactamase
22222111C-5 cytosine-specific DNA methylase
213225232121143Calcineurin-like phosphoesterase
85468940Cellulase (glycosyl hydrolase family 5)
78777743tRNA synthetases class II (D, K and N)
414035373737227Mitochondrial carrier protein
1314913131375Aminotransferase class I and II
410844434Phosphoribosyl transferase domain
1011101010960Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22122211Ribosomal protein S4/S9 N-terminal domain
2322211Ribosomal protein S12/S23
111126Chaperonin 10 Kd subunit
101412910964C2 domain
8281888878PH domain
129714121367bZIP transcription factor
15161314151588Aldehyde dehydrogenase family
1061399810610998656Fungal Zn(2)-Cys(6) binuclear cluster domain
222321212124132Cytochrome b5-like Heme/Steroid binding domain
44334422Oxidoreductase molybdopterin binding domain
14151414161689Oxidoreductase NAD-binding domain
252823242424148SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
182017191920113Ubiquitin-conjugating enzyme
67555533Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
221510Chitin recognition protein
33333318Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
1111228Cupin
23222213Annexin
111115Eukaryotic-type carbonic anhydrase
1111116Chalcone and stilbene synthases, N-terminal domain
333333182-oxoacid dehydrogenases acyltransferase (catalytic domain)
43334421Catalase
1111116Disintegrin
6154521UDP-glucoronosyl and UDP-glucosyl transferase
79666741Aminotransferase class-III
22222212Ribosomal protein S19
1211117DNA gyrase B
46444426Thiamine pyrophosphate enzyme, central domain
33333318Lyase
22222212Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1211117Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1211117Indole-3-glycerol phosphate synthase
2111128Aromatic amino acid lyase
1211117Pyruvate kinase, barrel domain
10131010101063Kinesin motor domain
283325282626166DnaJ domain
14161214141484Proteasome subunit
1111116Major intrinsic protein
1111116ATP synthase
1211117Glycosyl hydrolase family 1
12111173'5'-cyclic nucleotide phosphodiesterase
1211117Profilin
212229Ribosomal protein L22p/L17e
22122211Ribosomal protein L14p/L23e
1114101012966Ubiquitin family
56355529Cofilin/tropomyosin-type actin-binding protein
3323331714-3-3 protein
27522220Alkaline phosphatase
22222212Zinc carboxypeptidase
181917182020112Aldo/keto reductase family
9201798871Myb-like DNA-binding domain
34444322Forkhead domain
322310Glycosyl hydrolases family 32 N-terminal domain
21122210Ribosomal protein L16p/L10e
2222210Ribosomal protein S14p/S29e
44444424FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
224
11Dehydrin
66666636Flavodoxin
1111116Calreticulin family
9958121255Common central domain of tyrosinase
108399948Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
434147444444263DEAD/DEAH box helicase
728071727271438Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
12212210Ribosomal protein L5
66666636Pyridoxal-dependent decarboxylase conserved domain
34233318Citrate synthase, C-terminal domain
56555531GHMP kinases N terminal domain
56555531Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
911910101059Pyridoxal-phosphate dependent enzyme
17181517161699NUDIX domain
59355431pfkB family carbohydrate kinase
32222213Glycosyl hydrolases family 28
44244422Luciferase-like monooxygenase
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
1012710101059Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
1111116Lipoxygenase
44444424ATP synthase alpha/beta chain, C terminal domain
58555533Calponin homology (CH) domain
35433220Glutamine amidotransferases class-II
22122211Ribosomal protein S15
1111116Thaumatin family
22222212Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22222212SRF-type transcription factor (DNA-binding and dimerisation domain)
610666640GATA zinc finger
11222011111085Amino acid permease
43154421Prolyl oligopeptidase family
22222212Ribosomal protein L30p/L7e
57566635Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44454425Aconitase family (aconitate hydratase)
54456630Glycosyl hydrolase family 10
35133318Glycosyl hydrolases family 17
22222515Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
11Tetraspanin family
21222211Ribosomal protein S10p/S20e
34333319Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22122211Ribosomal protein L6
43334421Polyprenyl synthetase
44444424Hexokinase
157713141369Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
44444424Rieske [2Fe-2S] domain
212229Phytochrome region
78777743Biotin-requiring enzyme
1111116Phosphofructokinase
22122211Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
33333318FGGY family of carbohydrate kinases, N-terminal domain
87777743Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
23222213Transcription factor TFIIB repeat
79776743Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
612477642Chromo (CHRromatin Organisation MOdifier) domain
44444424Phosphatidylinositol-specific phospholipase C, Y domain
66555633Phosphatidylinositol-specific phospholipase C, X domain
76557737D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
23222213Malic enzyme, N-terminal domain
222222126-phosphogluconate dehydrogenase, C-terminal domain
11101010131367Multicopper oxidase
11Granulin
998791052WW domain
21122210Ribosomal RNA adenine dimethylase
112Yeast PIR protein repeat
1001141009598102609WD domain, G-beta repeat
45443424Heavy-metal-associated domain
44445425Adenylate kinase
21222211Phosphoglucomutase/phosphomannomutase, C-terminal domain
23222213Ribosomal protein S8
21122210Ribosomal protein S11
45444425LIM domain
3234315Regulator of chromosome condensation (RCC1) repeat
22122211Ribosomal protein S13/S18
33333318chorismate binding enzyme
3433331960s Acidic ribosomal protein
44444424Prenyltransferase and squalene oxidase repeat
38333323Protein kinase C terminal domain
1211117Single-strand binding protein family
1211117S-adenosylmethionine synthetase, N-terminal domain
88788847Bromodomain
99888850Acyl-CoA dehydrogenase, C-terminal domain
13171513131283Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
111126Ribonuclease T2 family
23333317HSF-type DNA-binding
32233316SRP54-type protein, GTPase domain
1211117Urease alpha-subunit, N-terminal domain
44444424Serine carboxypeptidase
88888848Phosphatidylinositol 3- and 4-kinase
1111116Transketolase, thiamine diphosphate binding domain
32223315Glycosyl hydrolases family 11
55555530Inositol monophosphatase family
45344424Glutaredoxin
23222213Isocitrate lyase family
23222213Serine hydroxymethyltransferase
1111116Iron-containing alcohol dehydrogenase
23222213Ribosomal protein L10
44444424KOW motif
111115Ribosomal protein L34
11114Ribosomal protein L33
33133316RF-1 domain
22222212Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
2111117Glucose-6-phosphate dehydrogenase, NAD binding domain
57555532Protein phosphatase 2C
22222212Nucleotidyl transferase
33233317Carbonic anhydrase
1111217Phosphoribulokinase / Uridine kinase family
65566634Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
45444425Arginase family
66666636MCM P-loop domain
33233317Squalene/phytoene synthase
910811111261FHA domain
312825283031173AMP-binding enzyme
34333319G-protein alpha subunit
11151010101167HMG (high mobility group) box
11131111111067His Kinase A (phospho-acceptor) domain
33333217Armadillo/beta-catenin-like repeat
172622141416109Tetratricopeptide repeat
33223316Ion transport protein
1211117DNA gyrase/topoisomerase IV, subunit A
410836334BRCA1 C Terminus (BRCT) domain
89788848Glycosyl transferases group 1
24422216Glycosyl transferase family 2
13511112SAM domain (Sterile alpha motif)
1211117linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1111116Pectate lyase
2211118ribonuclease
1211117Urease, gamma subunit
44444424CoA-ligase
178712141775Phosphopantetheine attachment site
33333318Formyl transferase
810688848Metallopeptidase family M24
219142239Leucine Rich Repeat
4241454455alpha/beta hydrolase fold
33333419RNA polymerase Rpb2, domain 6
44444424PB1 domain
22222212Staphylococcal nuclease homologue
1210912121267Rab-GTPase-TBC domain
1111116Tudor domain
1111116WH1 domain
34333319Zinc finger, ZZ type
1112218HRDC domain
611876745CBS domain
23222213Ribosomal protein L13
23222213Ribosomal protein L4/L1 family
1111116Clp protease
55355528S1 RNA binding domain
1311118HIUase/Transthyretin family
23322214AhpC/TSA family
34444423tRNA synthetases class I (W and Y)
111227UvrD/REP helicase N-terminal domain
94410101047Rhodanese-like domain
25122214Universal stress protein family
173120171917121Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1211117C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
710877746tRNA synthetase class II core domain (G, H, P, S and T)
1111116SpoU rRNA Methylase family
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
12115PDZ domain
32223315Class II Aldolase and Adducin N-terminal domain
45444425Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
54455528Fes/CIP4, and EFC/F-BAR homology domain
28522221IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
36533323Phospholipase D Active site motif
42144419Regulator of G protein signaling domain
47444427GTPase-activator protein for Ras-like GTPase
46444426RasGEF domain
46344425RasGEF N-terminal motif
10151010101065RhoGAP domain
67666637RhoGEF domain
33333318SPRY domain
33333318RNA polymerase Rpb1, domain 2
22222212Guanylate kinase
34432319Gelsolin repeat
410633329UBA/TS-N domain
12181413121382PHD-finger
111115GGL domain
610666640HECT-domain (ubiquitin-transferase)
22213212Helix-hairpin-helix motif
111115MSP (Major sperm protein) domain
45344424Ribonuclease III domain
43144420Region in Clathrin and VPS
34333420RanBP1 domain
13212211PPIC-type PPIASE domain
24322215Zn-finger in Ran binding protein and others
8151479861Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1111116Poly(ADP-ribose) polymerase catalytic domain
111115Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
1044371088117F-box domain
1111116Elongation factor 1 gamma, conserved domain
45444425Calpain family cysteine protease
22221110Copper fist DNA binding domain
56556532CRAL/TRIO domain
158312161468BTB/POZ domain
23112211Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
34333319Voltage gated chloride channel
32232214Caspase domain
410946538GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
202017181920114ABC transporter transmembrane region
55556632FAD binding domain
53333623Condensation domain
1211117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222212ribosomal L5P family C-terminus
66566635Insulinase (Peptidase family M16)
33333318Dehydrogenase E1 component
1111116Lumazine binding domain
58555533Elongation factor G C-terminus
46444426HMGL-like
46444426DnaJ central domain
43334421Starch binding domain
32233316Ribosomal protein L1p/L10e family
77777742Cation transporting ATPase, C-terminus
88688846Cation transporter/ATPase, N-terminus
1111116dUTPase
44444424Aconitase C-terminal domain
34333319Amino acid kinase family
1211117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
12109991261Acyl transferase domain
1211117Urease beta subunit
44444424Dihydrodipicolinate synthetase family
152928151514116haloacid dehalogenase-like hydrolase
66556533Glycosyl hydrolases family 2
1691011112178Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
11114Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
1111116Adenylosuccinate synthetase
1411119Asparaginase, N-terminal
11Beta defensin
33333318Peptidase S24-like
22222212Inorganic pyrophosphatase
16131315151688Glycosyl hydrolases family 16
32223315Glycosyl hydrolases family 15
33332216NADH:flavin oxidoreductase / NADH oxidase family
444445253-hydroxyacyl-CoA dehydrogenase, C-terminal domain
1211117Glycosyl hydrolase family 20, catalytic domain
76676638HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
12769161767GMC oxidoreductase
22122211Asparagine synthase
232119192524131Fungal cellulose binding domain
66666636Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
665623Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
33333318tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
54454325XPG N-terminal domain
713878649Metallo-beta-lactamase superfamily
1212118F5/8 type C domain
22222212Choline/Carnitine o-acyltransferase
1111228Putative esterase
1111116Ferrochelatase
24222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1211117Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
11Ezrin/radixin/moesin family
33333318RNB domain
44344423Dioxygenase
34333319CNH domain
23122212Diacylglycerol kinase catalytic domain
87588743Dual specificity phosphatase, catalytic domain
44
25222215P21-Rho-binding domain
12161213131278PX domain
24322215Ras association (RalGDS/AF-6) domain
36333321UBX domain
54455528VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
1111887651Carbon-nitrogen hydrolase
1111116N-acetyltransferase
1211117Prephenate dehydratase
47444427Syntaxin
48544429Pumilio-family RNA binding repeat
79667742Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22122211ER lumen protein retaining receptor
2321210Glycoprotease family
1111116Histidinol dehydrogenase
45434424impB/mucB/samB family
112
1111116Ribosomal L15
31133314Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
1111116Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
75456633Glycosyl hydrolase family 7
1211117RNA pseudouridylate synthase
44444424Histone deacetylase domain
21222211POT family
1111116PWWP domain
181910181820103SET domain
43234420Isochorismatase family
34133317Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
55555429XPG I-region
1111116Acetokinase family
22212211DNA photolyase
111115Nitroreductase family
43233318Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
22222212Acyl CoA binding protein
45344424Cullin family
79377841FAD binding domain
98769847O-methyltransferase domain
34123215EamA-like transporter family
112
913888854ThiF family
1111116Ribosomal family S4e
33335421Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
64445528Ammonium Transporter Family
35445425Sulfate permease family
1111116MATH domain
11Gastrin/cholecystokinin family
32223315Dehydratase family
22222212Transaldolase/Fructose-6-phosphate aldolase
22222212Mechanosensitive ion channel
21222211GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44344423Adaptor complexes medium subunit family
78577741Exonuclease
1111116Dipeptidyl peptidase IV (DPP IV) N-terminal region
11331229NB-ARC domain
911910101059Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
1111116Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
1111116FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
22222212HCO3- transporter family
32222213Nucleosome assembly protein (NAP)
44344423Synaptobrevin
1111116GMP synthase C terminal domain
45444425Adenosine/AMP deaminase
997891052Oxidoreductase FAD-binding domain
1111228Thioesterase domain
24222214Histidine biosynthesis protein
33333318Glycosyltransferase family 20
23222213UDP-glucose/GDP-mannose dehydrogenase family, central domain
23222213Carbamoyl-phosphate synthase small chain, CPSase domain
2311119PAS fold
34233419Probable molybdopterin binding domain
44444424Sec1 family
22222212GDP dissociation inhibitor
65256630Sodium/hydrogen exchanger family
22122211RNA polymerase Rpb3/RpoA insert domain
55555530Initiation factor 2 subunit family
11PQQ enzyme repeat
22122211Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1131118GTP1/OBG
22222212Gamma-glutamyltranspeptidase
2312210Ribosomal L40e family
1111116GrpE
22122211TatD related DNase
21122210Inhibitor of apoptosis-promoting Bax1
1211117Eukaryotic DNA topoisomerase I, catalytic core
82289938Dynamin central region
12111176-O-methylguanine DNA methyltransferase, DNA binding domain
23222213Bacteriorhodopsin-like protein
222222