PFAM Domains • Trichaptum abietinum v1.0
Annotations/GenomesBjead1_1Cersu1Dicsq1Fompi3Gansp1Phchr1Phlbr1Pospl1Trave1Triab1_1Wolco1TotalAnnotation Description
PFAMs
8,5587,6368,0728,1748,2655,9279,1603,2608,6148,6057,82584,096
5045445042385313474747476ATPase family associated with various cellular activities (AAA)
4648384739505317455138472ABC transporter
444444444440ATP synthase alpha/beta family, nucleotide-binding domain
1111116EGF-like domain
151414141415166141614152Elongation factor Tu GTP binding domain
121010161211138111011124Helix-loop-helix DNA-binding domain
7514796898780Hsp20/alpha crystallin family
881416971277795Hsp70 protein
88148888389789KH domain
1111111119SH2 domain
2625242528222614252921265SH3 domain
11TNFR/NGFR cysteine-rich region
1011101010613101310103Actin
2238172824223322262330285Ankyrin repeat
76777671713775ADP-ribosylation factor family
5541444049535617533739484Eukaryotic aspartyl protease
3333333133331Cyclic nucleotide-binding domain
1311111211114Cytochrome c
710777351514672Double-stranded RNA binding motif
221719172024219182216205EF hand
1111121222144Fe-4S binding domain
1111111119Fibronectin type III domain
21111129Globin
261918141814159251815191Glutathione S-transferase, C-terminal domain
111221111314Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
11771112711697694Homeodomain
1113Laminin EGF domain
222422222222lactate/malate dehydrogenase, NAD binding domain
11Lipocalin / cytosolic fatty-acid binding protein family
556755747455Myosin head (motor domain)
189207172170203113237651851811921,914Cytochrome P450
201189147154160120201791862511521,840Protein kinase domain
221316191716195161519177Pyridine nucleotide-disulphide oxidoreductase
241922252528255292425251Ras family
1110898912159910110Response regulator receiver domain
12385241542212105RNase H
7059606759597022666064656RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
21653320Reverse transcriptase (RNA-dependent DNA polymerase)
21111111110Copper/zinc superoxide dismutase (SODC)
2432232132226Iron/manganese superoxide dismutases, alpha-hairpin domain
3963546526269Subtilase family
303731303147349313432346Sugar (and other) transporter
1278991013189995Thioredoxin
5456555254551Tubulin/FtsZ family, GTPase domain
1044724932449von Willebrand factor type A domain
63535067565267176606154759Zinc finger, C2H2 type
7360596659266715575865605Zinc finger, C3HC4 type (RING finger)
25323113407118146282542471Zinc knuckle
2222222222222Protein-tyrosine phosphatase
6983821268575101551131131111,013short chain dehydrogenase
4556645345576431735362603Zinc-binding dehydrogenase
4545567344451Thiolase, N-terminal domain
54485210236857Beta-ketoacyl synthase, N-terminal domain
3223333333282Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
121112211113Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
8779776107977Glutamine amidotransferase class-I
9101010109911091097TCP-1/cpn60 chaperonin family
11ATP synthase A chain
6237345233341Glutamine synthetase, catalytic domain
111111211111Triosephosphate isomerase
121614161811157111111142E1-E2 ATPase
151419151616183141815163Core histone H2A/H2B/H3/H4
2125Copper binding proteins, plastocyanin/azurin family
9686787369877Alpha amylase, catalytic domain
4666656365659Phorbol esters/diacylglycerol binding domain (C1 domain)
435454453441Bacterial transferase hexapeptide (six repeats)
3333364133335tRNA synthetases class I (I, L, M and V)
141312121314145101010127Cyclin, N-terminal domain
163324212592420202420236Carboxylesterase family
444444443439DNA polymerase family B
3333333333333ATP synthase subunit C
2117142101716127172144Peroxidase
7356539675258Beta-lactamase
5343554344343C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
2626252724192714272627268Calcineurin-like phosphoesterase
12912141181512131812136Cellulase (glycosyl hydrolase family 5)
6676667165662tRNA synthetases class II (D, K and N)
373637384034388364039383Mitochondrial carrier protein
151618161713145201416164Aminotransferase class I and II
766665776662Phosphoribosyl transferase domain
141512131414147141114142Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111111111Phosphoglycerate kinase
2222222222222Ribosomal protein S4/S9 N-terminal domain
2222222222222Ribosomal protein S12/S23
1111111119Chaperonin 10 Kd subunit
1512121312161610141513148C2 domain
201622182018184202121198PH domain
6654588566463bZIP transcription factor
192419181919233171616193Aldehyde dehydrogenase family
6970776182357128849066733Fungal Zn(2)-Cys(6) binuclear cluster domain
2625232522233211242229262Cytochrome b5-like Heme/Steroid binding domain
6433346143643Oxidoreductase molybdopterin binding domain
1212121112131321579118Oxidoreductase NAD-binding domain
2726212122122610202426235SNF2 family N-terminal domain
2222221232222Ribosomal protein S7p/S5e
211820212120235202021210Ubiquitin-conjugating enzyme
5556555156553Isocitrate/isopropylmalate dehydrogenase
2222222122221Ribosomal Proteins L2, RNA binding domain
232423422226Hsp90 protein
222222231220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
22Chitin recognition protein
6222712122229Cysteine-rich secretory protein family
11121211212Ribosomal protein S3, C-terminal domain
89765911265573Cupin
1326Chalcone and stilbene synthases, N-terminal domain
33333231333302-oxoacid dehydrogenases acyltransferase (catalytic domain)
3333353734441Catalase
111112119Disintegrin
956376192158UDP-glucoronosyl and UDP-glucosyl transferase
5558555255555Aminotransferase class-III
2122222322222Ribosomal protein S19
112111111111DNA gyrase B
334343344334Thiamine pyrophosphate enzyme, central domain
3333333133331Lyase
211112212114Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111111111111Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
212221111114Indole-3-glycerol phosphate synthase
223211112116Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
1099710101099118102Kinesin motor domain
3122283332223013312834304DnaJ domain
141214141414155141614146Proteasome subunit
10854686153460Major intrinsic protein
311111111112ATP synthase
2342322223126Glycosyl hydrolase family 1
1111111111103'5'-cyclic nucleotide phosphodiesterase
111111211111Profilin
2212121312118Ribosomal protein L22p/L17e
2222222222222Ribosomal protein L14p/L23e
171517171912135171516163Ubiquitin family
5555545246551Cofilin/tropomyosin-type actin-binding protein
22122222221914-3-3 protein
332122334124Alkaline phosphatase
121111111111Zinc carboxypeptidase
6458615548537936675954634Aldo/keto reductase family
121013141213144121512131Myb-like DNA-binding domain
5559556367561Forkhead domain
241310Glycosyl hydrolases family 32 N-terminal domain
1111111211112Ribosomal protein L16p/L10e
211221222217Ribosomal protein S14p/S29e
33312335433345FKBP-type peptidyl-prolyl cis-trans isomerase
111111121111Glutathione peroxidase
2212122221219
996571312365479Flavodoxin
11Protamine P1
112Tropomyosin
111111111110Calreticulin family
64332952236Common central domain of tyrosinase
7577738106868Aminotransferase class-V
122224732227Ribonucleotide reductase, small chain
4953526346446615465651541DEAD/DEAH box helicase
86888983755911531768988879Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
111311211214EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222322223Ribosomal protein L23
111111111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111111211112Ribosomal protein L5
544433346440Pyridoxal-dependent decarboxylase conserved domain
3433533233436Citrate synthase, C-terminal domain
5555545155550GHMP kinases N terminal domain
776676878971Biotin carboxylase, N-terminal domain
111111131112Tryptophan synthase alpha chain
88911910841181096Pyridoxal-phosphate dependent enzyme
16915151511158151415148NUDIX domain
443332434333pfkB family carbohydrate kinase
6671210357912986Glycosyl hydrolases family 28
2222222222222Ribosomal protein L3
2222222322223Ribosomal protein L11, RNA binding domain
10878868277980Histidine phosphatase superfamily (branch 1)
1111112111112Thymidylate synthase
4444444144441ATP synthase alpha/beta chain, C terminal domain
5445444144443Calponin homology (CH) domain
555454555447Glutamine amidotransferases class-II
2222213222222Ribosomal protein S15
53413103685461Thaumatin family
111111111110Fructose-1-6-bisphosphatase, N-terminal domain
111111322114Ribonucleotide reductase, all-alpha domain
233222222222Ribosomal protein S2
2222322222223SRF-type transcription factor (DNA-binding and dimerisation domain)
91010911713491110103GATA zinc finger
262524232216299242323244Amino acid permease
6446425246649Prolyl oligopeptidase family
1121111211113Ribosomal protein L30p/L7e
1191415148184151012130Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
5445445551051Aconitase family (aconitate hydratase)
46539684610465Glycosyl hydrolase family 10
111111111110Glycosyl hydrolases family 17
2222222322223Ribosomal protein S5, N-terminal domain
222222222220Nucleoside diphosphate kinase
112221111113Tetraspanin family
11Galactoside-binding lectin
2222222322223Ribosomal protein S10p/S20e
417485373446Arrestin (or S-antigen), N-terminal domain
1112111111112Phosphoglucose isomerase
111111111110Carbohydrate phosphorylase
1111111111111SecY translocase
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2122222222221Ribosomal protein L6
3583436335447Polyprenyl synthetase
222222222220Hexokinase
876911510187779Dynamin family
121121111112Transcription factor TFIID (or TATA-binding protein, TBP)
443433445337Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
112Phytochrome region
33Proton-conducting membrane transporter
78888881913886Biotin-requiring enzyme
111111211111Phosphofructokinase
2232223222224Ribosomal protein S17
111111111110Hydroxymethylglutaryl-coenzyme A reductase
3333434244336FGGY family of carbohydrate kinases, N-terminal domain
868788738101285Enoyl-CoA hydratase/isomerase
2222212222221Ribosomal protein S9/S16
224232222223Transcription factor TFIIB repeat
6569858478874Cytidine and deoxycytidylate deaminase zinc-binding region
1111111119Molybdopterin oxidoreductase
19711819611791011172Chromo (CHRromatin Organisation MOdifier) domain
111111114113Phosphatidylinositol-specific phospholipase C, Y domain
111121214115Phosphatidylinositol-specific phospholipase C, X domain
66710666476872D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
3332336232434Malic enzyme, N-terminal domain
1222123222196-phosphogluconate dehydrogenase, C-terminal domain
2913717510610185102Multicopper oxidase
108710869479886WW domain
2122212122219Ribosomal RNA adenine dimethylase
212178192138163116143581291511391,619WD domain, G-beta repeat
4543745453448Heavy-metal-associated domain
323333333329Adenylate kinase
211222212116Phosphoglucomutase/phosphomannomutase, C-terminal domain
2212121511220Ribosomal protein S8
2212112211116Ribosomal protein S11
6665653556558LIM domain
11Matrixin
4423233125332Regulator of chromosome condensation (RCC1) repeat
2112222212219Ribosomal protein S13/S18
223222222221chorismate binding enzyme
333333333333360s Acidic ribosomal protein
5444444144543Prenyltransferase and squalene oxidase repeat
7567646166660Protein kinase C terminal domain
1111111119Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
1188111010116101010105Bromodomain
8810989125109997Acyl-CoA dehydrogenase, C-terminal domain
141314161514168141515154Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
222322624227Ribonuclease T2 family
4254549264449HSF-type DNA-binding
222222222220SRP54-type protein, GTPase domain
1121111211113Urease alpha-subunit, N-terminal domain
331418101821282241911198Serine carboxypeptidase
22Apoptosis regulator proteins, Bcl-2 family
888887898880Phosphatidylinositol 3- and 4-kinase
2222222121220Transketolase, thiamine diphosphate binding domain
112Glycosyl hydrolases family 11
11WHEP-TRS domain
4233623122230Inositol monophosphatase family
334443544438Glutaredoxin
1144332443341Isocitrate lyase family
11121121111Serine hydroxymethyltransferase
433443433435Iron-containing alcohol dehydrogenase
1222232222222Ribosomal protein L10
5345465655553KOW motif
111111111110Ribosomal protein L34
3433223234332RF-1 domain
3224133124631Sodium:solute symporter family
111111111110Imidazoleglycerol-phosphate dehydratase
111111111312DNA polymerase family A
112311111113IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
84767594891077Protein phosphatase 2C
223321323324Nucleotidyl transferase
546534454242Carbonic anhydrase
111111111110Phosphoribulokinase / Uridine kinase family
151091112620516910123Fatty acid desaturase
66576679661074MutS domain V
1111111211112Delta-aminolevulinic acid dehydratase
545433544542Arginase family
8866666366667MCM P-loop domain
111111111110Squalene/phytoene synthase
201112915814413108124FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
423534273030538334434370AMP-binding enzyme
161315141691418141316158G-protein alpha subunit
1514161619151820282714202HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Haemagglutinin
22Cytochrome c oxidase subunit III
8556568958671His Kinase A (phospho-acceptor) domain
333332333430Armadillo/beta-catenin-like repeat
2731263328233117263633311Tetratricopeptide repeat
2323317234434Ion transport protein
111111111110DNA gyrase/topoisomerase IV, subunit A
10128911610611119103BRCA1 C Terminus (BRCT) domain
6676646164658Glycosyl transferases group 1
4334565246446Glycosyl transferase family 2
112132111SAM domain (Sterile alpha motif)
312332233325linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
123Pectate lyase
653111111121ribonuclease
1121111211113Urease, gamma subunit
3333333133331CoA-ligase
689876988776Phosphopantetheine attachment site
2222212322222Formyl transferase
10101010109114101010104Metallopeptidase family M24
151516161514155141517157Leucine Rich Repeat
5035434650235010634836454alpha/beta hydrolase fold
333333333330RNA polymerase Rpb2, domain 6
6358537154754PB1 domain
222222222220Staphylococcal nuclease homologue
119998711109891Rab-GTPase-TBC domain
311111111112Tudor domain
2221221221219WH1 domain
544364466345Zinc finger, ZZ type
1111111111111HRDC domain
9101099891981092CBS domain
2222222222222Ribosomal protein L13
2222222222222Ribosomal protein L4/L1 family
1111111111111Clp protease
3434324334437S1 RNA binding domain
111111219HIUase/Transthyretin family
664446655450AhpC/TSA family
434444534439tRNA synthetases class I (W and Y)
12112111313UvrD/REP helicase N-terminal domain
344446554443Rhodanese-like domain
2222211322221Universal stress protein family
3728303734243615382734340Acetyltransferase (GNAT) family
11111121110SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
2222222222222AIR synthase related protein, N-terminal domain
6666669166664tRNA synthetase class II core domain (G, H, P, S and T)
134Phage integrase family
2223223132224Tetrapyrrole (Corrin/Porphyrin) Methylases
111111211111Glycosyl transferase family, a/b domain
22113312Class II Aldolase and Adducin N-terminal domain
4333324133332Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
554552665548Fes/CIP4, and EFC/F-BAR homology domain
334434345336IQ calmodulin-binding motif
222222222220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
4635344134441Phospholipase D Active site motif
121111111212Regulator of G protein signaling domain
4344444144541GTPase-activator protein for Ras-like GTPase
5776665158662RasGEF domain
6777717168764RasGEF N-terminal motif
131212141311138131212133RhoGAP domain
13121313138135121314129RhoGEF domain