PFAM Domains • Chlamydomonas reinhardtii v5.6
Annotations/GenomesChlre4Chlre5_6Chrzof1Dunsal1Gonpec1Monneg1Volca2_1TotalAnnotation Description
PFAMs
7,56512,71812,05710,95812,14810,40110,90576,752
52696261615661422ATPase family associated with various cellular activities (AAA)
64777357829061504ABC transporter
456546535ATP synthase alpha/beta family, nucleotide-binding domain
91111EGF-like domain
17242525211922153Elongation factor Tu GTP binding domain
8105423234Helix-loop-helix DNA-binding domain
6881674655Hsp20/alpha crystallin family
81391215111280Hsp70 protein
1313131312101589KH domain
11114Kunitz/Bovine pancreatic trypsin inhibitor domain
11114SH3 domain
33TNFR/NGFR cysteine-rich region
5812678854Actin
107474654992622401Ankyrin repeat
122231231PAN domain
1617111214111596ADP-ribosylation factor family
321111110Eukaryotic aspartyl protease
18282416281629159Cyclic nucleotide-binding domain
11Beta/Gamma crystallin
11211219Cystatin domain
123Cytochrome b(C-terminal)/b6/petD
4111119Cytochrome c
242141317Double-stranded RNA binding motif
101224362120EF hand
61211114Fe-4S binding domain
435347430Fibronectin type III domain
11Globin
981481191170Glutathione S-transferase, C-terminal domain
332433321Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1211117Homeodomain
72233421Kazal-type serine protease inhibitor domain
112Laminin EGF domain
556554535lactate/malate dehydrogenase, NAD binding domain
1514276448Lectin C-type domain
1571346238Ligand-gated ion channel
333339327Myosin head (motor domain)
11LNR domain
35414934385218267Cytochrome P450
22Phospholipase A2
4235382572465843043482,700Protein kinase domain
1616181118719105Pyridine nucleotide-disulphide oxidoreductase
14161914301517125Ras family
121810141481692Response regulator receiver domain
213RNase H
85829788819477604RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
3836680Reverse transcriptase (RNA-dependent DNA polymerase)
11142110Serpin (serine protease inhibitor)
464543632Iron/manganese superoxide dismutases, alpha-hairpin domain
10211917213822148Subtilase family
16132287287101Sugar (and other) transporter
26393532393440245Thioredoxin
1113Trefoil (P-type) domain
912114719769Trypsin
11Thrombospondin type 1 domain
101010911101070Tubulin/FtsZ family, GTPase domain
532111215von Willebrand factor type A domain
83223220Zinc finger, C2H2 type
791264779124Zinc finger, C3HC4 type (RING finger)
1262816149691Zinc knuckle
221222718Ribulose bisphosphate carboxylase, small chain
33532319Protein-tyrosine phosphatase
36375841354631284short chain dehydrogenase
1313221613177101Zinc-binding dehydrogenase
222223821Thiolase, N-terminal domain
44411512343Beta-ketoacyl synthase, N-terminal domain
1313101111811772Fe-2S iron-sulfur cluster binding domain
1522274163815137Papain family cysteine protease
11111319Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
11111117Cytochrome C oxidase subunit II, periplasmic domain
567873440Glutamine amidotransferase class-I
12151314152113103TCP-1/cpn60 chaperonin family
111115ATP synthase A chain
554355431Glutamine synthetase, catalytic domain
11111218Triosephosphate isomerase
20242419182221148E1-E2 ATPase
1249531681261948511Core histone H2A/H2B/H3/H4
11111139Copper binding proteins, plastocyanin/azurin family
810101067960Alpha amylase, catalytic domain
12810789862Bacterial transferase hexapeptide (six repeats)
567659644tRNA synthetases class I (I, L, M and V)
1417167221519110Cyclin, N-terminal domain
112149Carboxylesterase family
447564434DNA polymerase family B
442444426ATP synthase subunit C
6712749651Peroxidase
23222112Beta-lactamase
5710696245C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
11Nitrogenase component 1 type Oxidoreductase
25292523222322169Calcineurin-like phosphoesterase
5132515343Cellulase (glycosyl hydrolase family 5)
558659543tRNA synthetases class II (D, K and N)
44434853434842321Mitochondrial carrier protein
131117recA bacterial DNA recombination protein
11182224192917140Aminotransferase class I and II
977664544Phosphoribosyl transferase domain
111216Sigma-54 interaction domain
24312326241726171Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
221336219Phosphoglycerate kinase
122123213Ribosomal protein S4/S9 N-terminal domain
222223114Ribosomal protein S12/S23
444444428Chaperonin 10 Kd subunit
28282612201021145C2 domain
567742536PH domain
6151741081272bZIP transcription factor
81011711151072Aldehyde dehydrogenase family
1414111210101283Cytochrome b5-like Heme/Steroid binding domain
223314217Oxidoreductase molybdopterin binding domain
81012121114875Oxidoreductase NAD-binding domain
17303426273122187SNF2 family N-terminal domain
223323217Ribosomal protein S7p/S5e
21251726231721150Ubiquitin-conjugating enzyme
445247430Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11Chitinase class I
334534325Hsp90 protein
223221214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
213Chitin recognition protein
1314651662787Cysteine-rich secretory protein family
222223215Ribosomal protein S3, C-terminal domain
1629Cupin
1414Annexin
334534426Eukaryotic-type carbonic anhydrase
6665354352-oxoacid dehydrogenases acyltransferase (catalytic domain)
11211118Catalase
22Disintegrin
1231110119UDP-glucoronosyl and UDP-glucosyl transferase
778979855Aminotransferase class-III
121222212Ribosomal protein S19
222222214DNA gyrase B
223523219Thiamine pyrophosphate enzyme, central domain
143324320Lyase
31228Alpha-2-macroglobulin family
223323217Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
22Sodium:neurotransmitter symporter family
223122214Ferritin-like domain
6511921108128687534Adenylate and Guanylate cyclase catalytic domain
222223215ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Bacterial DNA-binding protein
122222213Indole-3-glycerol phosphate synthase
111115Aromatic amino acid lyase
7699712656Pyruvate kinase, barrel domain
35383546404035269Kinesin motor domain
59656051443960378DnaJ domain
15161715161416109Proteasome subunit
338138329Major intrinsic protein
222324217ATP synthase
22144414343Glycosyl hydrolase family 1
26311027195141323'5'-cyclic nucleotide phosphodiesterase
11211219Profilin
333333321Ribosomal protein L22p/L17e
222223215Ribosomal protein L14p/L23e
88Resolvase, N terminal domain
20222037252017161Ubiquitin family
11111218Cofilin/tropomyosin-type actin-binding protein
22226221814-3-3 protein
11Alkaline phosphatase
889679653Zinc carboxypeptidase
17193127182218152Aldo/keto reductase family
33343216203425194Myb-like DNA-binding domain
36101255647Glycosyl hydrolases family 32 N-terminal domain
12222312Ribosomal protein L16p/L10e
12222211Ribosomal protein S14p/S29e
23221918161917134FKBP-type peptidyl-prolyl cis-trans isomerase
543445429Glutathione peroxidase
22
11Dehydrin
1069698654Flavodoxin
223123215Calreticulin family
13217Common central domain of tyrosinase
1121117Thymidine kinase
611151012151079Aminotransferase class-V
225325221Ribonucleotide reductase, small chain
55707378575559447DEAD/DEAH box helicase
83100109105835984623Helicase conserved C-terminal domain
445745433Fructose-bisphosphate aldolase class-I
11111218EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
122223214Ribosomal protein L23
446246430Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1113Potato inhibitor I family
11111218Ribosomal protein L5
236337327Pyridoxal-dependent decarboxylase conserved domain
133366224Citrate synthase, C-terminal domain
676663640GHMP kinases N terminal domain
466546637Biotin carboxylase, N-terminal domain
11121118Tryptophan synthase alpha chain
911111011141278Pyridoxal-phosphate dependent enzyme
27252119192119151NUDIX domain
712131713111184pfkB family carbohydrate kinase
112Glycosyl hydrolases family 28
243333321Ribosomal protein L3
333334322Ribosomal protein L11, RNA binding domain
13161620181517115Histidine phosphatase superfamily (branch 1)
422233521Rubredoxin
11111117Thymidylate synthase
11214514Lipoxygenase
445443428ATP synthase alpha/beta chain, C terminal domain
244443526Calponin homology (CH) domain
233347325Glutamine amidotransferases class-II
32434117Phosphoenolpyruvate carboxylase
333432321Ribosomal protein S15
121121210'Cold-shock' DNA-binding domain
11114Thaumatin family
334537328Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
123313316Ribosomal protein S2
21111219SRF-type transcription factor (DNA-binding and dimerisation domain)
714139791271GATA zinc finger
22Amino acid permease
512999131067Prolyl oligopeptidase family
22222212Ribosomal protein L30p/L7e
77966641Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
222244218Aconitase family (aconitate hydratase)
22228Glycosyl hydrolase family 10
223423218Ribosomal protein S5, N-terminal domain
444545430Nucleoside diphosphate kinase
22Tetraspanin family
333343423Ribosomal protein S10p/S20e
2141210Arrestin (or S-antigen), N-terminal domain
11111319Phosphoglucose isomerase
223326220Carbohydrate phosphorylase
333336324SecY translocase
11211118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222233418Ribosomal protein L6
444447431Polyprenyl synthetase
11111117Hexokinase
614917169879Dynamin family
1112117Biopterin-dependent aromatic amino acid hydroxylase
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
22RTX calcium-binding nonapeptide repeat (4 copies)
16161520181617118Rieske [2Fe-2S] domain
325Proton-conducting membrane transporter
10121398101274Biotin-requiring enzyme
233335322Phosphofructokinase
332323319Ribosomal protein S17
334323321FGGY family of carbohydrate kinases, N-terminal domain
1111116FERM central domain
111115Sodium:dicarboxylate symporter family
33MerR family regulatory protein
6686610648Enoyl-CoA hydratase/isomerase
222223215Ribosomal protein S9/S16
223321215Transcription factor TFIIB repeat
665353634Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
37183109454Chromo (CHRromatin Organisation MOdifier) domain
111317Phosphatidylinositol-specific phospholipase C, Y domain
111317Phosphatidylinositol-specific phospholipase C, X domain
467734536D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
667745338Malic enzyme, N-terminal domain
221211211PEP-utilising enzyme, mobile domain
11111166-phosphogluconate dehydrogenase, C-terminal domain
2312210Multicopper oxidase
22222212Granulin
17211614141220114WW domain
222222214Ribosomal RNA adenine dimethylase
1701851792231731361761,242WD domain, G-beta repeat
774566641Heavy-metal-associated domain
10111Transferrin
88101084856Adenylate kinase
233322217Phosphoglucomutase/phosphomannomutase, C-terminal domain
1211218Ribosomal protein S8
122222314Ribosomal protein S11
111115LIM domain
1113Matrixin
91217158111183Regulator of chromosome condensation (RCC1) repeat
333434323Ribosomal protein S13/S18
1111116NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
233244321chorismate binding enzyme
33433432360s Acidic ribosomal protein
11111117ATP synthase B/B' CF(0)
112116CUB domain
332323319Prenyltransferase and squalene oxidase repeat
222219Protein kinase C terminal domain
1214Single-strand binding protein family
112Type II/IV secretion system protein
11211219S-adenosylmethionine synthetase, N-terminal domain
10132091481387Bromodomain
656765641Acyl-CoA dehydrogenase, C-terminal domain
16182228201619139Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
12413314Ribonuclease T2 family
221211211HSF-type DNA-binding
444445429SRP54-type protein, GTPase domain
777488647Serine carboxypeptidase
11111117Ribosomal protein L20
910111489970Phosphatidylinositol 3- and 4-kinase
11121118Transketolase, thiamine diphosphate binding domain
12111129WHEP-TRS domain
6651067646Inositol monophosphatase family
788688752Glutaredoxin
11112118Isocitrate lyase family
334334323Serine hydroxymethyltransferase
3323213Iron-containing alcohol dehydrogenase
333233320Ribosomal protein L10
755446637KOW motif
231221112Ribosomal protein L34
222212213Ribosomal protein L33
344433526RF-1 domain
672462532Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
2441355134DNA polymerase family A
1135Small hydrophilic plant seed protein
11111117IMP dehydrogenase / GMP reductase domain
112322213Glucose-6-phosphate dehydrogenase, NAD binding domain
23283418273430194Protein phosphatase 2C
678778750Nucleotidyl transferase
46344324Carbonic anhydrase
449443432Phosphoribulokinase / Uridine kinase family
10101676161176Fatty acid desaturase
581013912764MutS domain V
11111117Delta-aminolevulinic acid dehydratase
88913871063MCM P-loop domain
234432321Squalene/phytoene synthase
33Bacterial extracellular solute-binding proteins, family 5 Middle
571145234Bacterial extracellular solute-binding proteins, family 3
1115141110121487FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
11141919142112110AMP-binding enzyme
36363528394027241Chlorophyll A-B binding protein
99117810761HMG (high mobility group) box
1111116NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1111217Cytochrome c oxidase subunit III
794173738His Kinase A (phospho-acceptor) domain
16109101091175Armadillo/beta-catenin-like repeat
57212622211423184Tetratricopeptide repeat
32381826301130185Ion transport protein
223323217DNA gyrase/topoisomerase IV, subunit A
222212213Binding-protein-dependent transport system inner membrane component
25363821120Scavenger receptor cysteine-rich domain
436131321BRCA1 C Terminus (BRCT) domain
14212415142117126Glycosyl transferases group 1
555524430Glycosyl transferase family 2
65632325SAM domain (Sterile alpha motif)
3341142330linker histone H1 and H5 family
221321213Ribosomal protein L7/L12 C-terminal domain
111115Nitrogen regulatory protein P-II
233423320CoA-ligase
334749232Phosphopantetheine attachment site
443222421Formyl transferase
79108710859Metallopeptidase family M24
90264115153017234Leucine Rich Repeat
186716442alpha/beta hydrolase fold
335324323RNA polymerase Rpb2, domain 6
32223315PB1 domain
223323318Staphylococcal nuclease homologue
91417915101488Rab-GTPase-TBC domain
1111116Tudor domain
4521054535Zinc finger, ZZ type
354352527HRDC domain
1314151113121290CBS domain
332322318Ribosomal protein L13
333332320Ribosomal protein L4/L1 family
888789755Clp protease
579111710766S1 RNA binding domain
1112117HIUase/Transthyretin family
7610658547AhpC/TSA family
444555431tRNA synthetases class I (W and Y)
233863126UvrD/REP helicase N-terminal domain
12261823182022139Rhodanese-like domain
3896107851Universal stress protein family
32393335342631230Acetyltransferase (GNAT) family
1121128SecE/Sec61-gamma subunits of protein translocation complex
111112310C-terminal regulatory domain of Threonine dehydratase
233323319AIR synthase related protein, N-terminal domain
877766647tRNA synthetase class II core domain (G, H, P, S and T)
8128101181269SpoU rRNA Methylase family
32117Phage integrase family
344543427Tetrapyrrole (Corrin/Porphyrin) Methylases
111213110Glycosyl transferase family, a/b domain
1055343333PDZ domain
1111116Class II Aldolase and Adducin N-terminal domain
22
22132212Diacylglycerol kinase accessory domain
112138Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
3228181821828153IQ calmodulin-binding motif
222222113Phosphoinositide 3-kinase family, accessory domain (PIK domain)
112Phospholipase D Active site motif
1111217RhoGAP domain
579874747SPRY domain
333331319RNA polymerase Rpb1, domain 2
444347430Guanylate kinase
331321215Gelsolin repeat
1513151010141188UBA/TS-N domain
2821241229913136PHD-finger
234132318Filamin/ABP280 repeat
8111110891168HECT-domain (ubiquitin-transferase)
12216Helix-hairpin-helix motif
11BRCA2 repeat
11131119MSP (Major sperm protein) domain
334432221Ribonuclease III domain
124231215Region in Clathrin and VPS
123322215RanBP1 domain
213211111PPIC-type PPIASE domain
342222318Zn-finger in Ran binding protein and others
22171612111714109Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1211117B-box zinc finger
2212119Poly(ADP-ribose) polymerase catalytic domain
22116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
63111012949118F-box domain
12115Elongation factor 1 gamma, conserved domain
463341526Calpain family cysteine protease
15171812171611106CRAL/TRIO domain
3155326591518216BTB/POZ domain
11301437Ricin-type beta-trefoil lectin domain
566767643Voltage gated chloride channel
223922222Caspase domain
242311215GDSL-like Lipase/Acylhydrolase
112217Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
16191614182014117ABC transporter transmembrane region
5533391Integrase core domain
446768439FAD binding domain
11Condensation domain
11121118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
112113110ribosomal L5P family C-terminus
79108781059Insulinase (Peptidase family M16)
445553430Dehydrogenase E1 component
1111116Lumazine binding domain
7810755850Elongation factor G C-terminus
333322319HMGL-like
323222216DnaJ central domain
41015731242Sulfotransferase domain
10191313121915101Starch binding domain
345445429Ribosomal protein L1p/L10e family
911104712659Cation transporting ATPase, C-terminus
1114948101066Cation transporter/ATPase, N-terminus
11111117dUTPase
222332216Aconitase C-terminal domain
788575747Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
122225216Acyl transferase domain
11111117Dihydrodipicolinate synthetase family
43201916121815143haloacid dehalogenase-like hydrolase
112Glycosyl hydrolases family 2
792252229Glycosyl hydrolases family 18
1121128Proliferating cell nuclear antigen, N-terminal domain
222212213Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
11112118Adenylosuccinate synthetase
1212129Asparaginase, N-terminal
431332218Peptidase S24-like
333433221Inorganic pyrophosphatase
13532115Glycosyl hydrolases family 16
442234221NADH:flavin oxidoreductase / NADH oxidase family
2231212133-hydroxyacyl-CoA dehydrogenase, C-terminal domain
132118Glycosyl hydrolase family 20, catalytic domain
456524430HhH-GPD superfamily base excision DNA repair protein
122321213AIR carboxylase
11211219GMC oxidoreductase
242342320Asparagine synthase
123161115Septin
222212213Homoserine dehydrogenase
862103433Flavin-binding monooxygenase-like
11111218Glutamyl-tRNAGlu reductase, dimerisation domain
334333322tRNA synthetases class I (E and Q), catalytic domain
1131118tRNA synthetases class I (R)
444542427XPG N-terminal domain
789999859Metallo-beta-lactamase superfamily
242511428F5/8 type C domain
222123315Putative esterase
3373211460Glycosyl hydrolase family 9
11111117Ferrochelatase
332332319Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111218Arginosuccinate synthase
11121118Electron transfer flavoprotein FAD-binding domain
2431434434RNB domain
112Dioxygenase
11BTK motif
1113CNH domain
158443530Diacylglycerol kinase catalytic domain
917151313151698Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
33
367654536PX domain
4710684948UBX domain
32222314VHS domain
1111116Phosphoinositide 3-kinase C2
579876547Carbon-nitrogen hydrolase
11111117Photosystem I reaction centre subunit VIII
112N-acetyltransferase
11121118Prephenate dehydratase
2114PKD domain
434123219Syntaxin
433433222Pentapeptide repeats (8 copies)
453131320Pumilio-family RNA binding repeat
668565642Histone-like transcription factor (CBF/NF-Y) and archaeal histone
22331213Pterin binding enzyme
132433319ER lumen protein retaining receptor
22222212tRNA N6-adenosine threonylcarbamoyltransferase
11111218Histidinol dehydrogenase
466465536impB/mucB/samB family
11
11211219Ribosomal L15
133436323Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
223222215Ribosomal prokaryotic L21 protein
12111118Ribosomal L28 family
21111118Ribosomal L29 protein
1113Ribosomal L39 protein
11111117Ribosomal S17
233223217Ribulose-phosphate 3 epimerase family
11Iodothyronine deiodinase
3447410537Cysteine rich repeat
15222416132719136AP2 domain
112Ring hydroxylating alpha subunit (catalytic domain)
8101015981070RNA pseudouridylate synthase
1315141413101594Histone deacetylase domain