PFAM Domains • Echinodontium tinctorium Aho-80 v1.0
Annotations/GenomesAmycha1Echtin1Lopni1Ricme1Scysp1_1Varmin1TotalAnnotation Description
PFAMs
10,01410,0359,9039,84710,3189,16659,283
394447475652285ATPase family associated with various cellular activities (AAA)
404557564235275ABC transporter
46444426ATP synthase alpha/beta family, nucleotide-binding domain
17151414161692Elongation factor Tu GTP binding domain
13101113101168Helix-loop-helix DNA-binding domain
7712145752Hsp20/alpha crystallin family
15191279769Hsp70 protein
77888846KH domain
112SH2 domain
161733361815135SH3 domain
11111211111268Actin
6356732712177Ankyrin repeat
771098748ADP-ribosylation factor family
342939403030202Eukaryotic aspartyl protease
33333318Cyclic nucleotide-binding domain
22221110Cytochrome c
121313126561Double-stranded RNA binding motif
2218192144EF hand
2244Fe-4S binding domain
112Fibronectin type III domain
24141381051Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
79986645Homeodomain
112Laminin EGF domain
22222212lactate/malate dehydrogenase, NAD binding domain
112Lipocalin / cytosolic fatty-acid binding protein family
56667636Myosin head (motor domain)
1781621831751611671,026Cytochrome P450
2071951922041871401,125Protein kinase domain
15172120101194Pyridine nucleotide-disulphide oxidoreductase
252425243027155Ras family
991112101061Response regulator receiver domain
7311811444RNase H
615580806757400RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1111116Copper/zinc superoxide dismutase (SODC)
22222212Iron/manganese superoxide dismutases, alpha-hairpin domain
232123141275Subtilase family
413844414942255Sugar (and other) transporter
1010121311864Thioredoxin
55665532Tubulin/FtsZ family, GTPase domain
13329von Willebrand factor type A domain
151760612014187Zinc finger, C2H2 type
778882218213Zinc finger, C3HC4 type (RING finger)
12826236681Zinc knuckle
22226216Protein-tyrosine phosphatase
961031611589391702short chain dehydrogenase
403281804251326Zinc-binding dehydrogenase
56555733Thiolase, N-terminal domain
526511635Beta-ketoacyl synthase, N-terminal domain
113311102Fe-2S iron-sulfur cluster binding domain
1111116Enolase, C-terminal TIM barrel domain
99778848Glutamine amidotransferase class-I
10101010101060TCP-1/cpn60 chaperonin family
11ATP synthase A chain
33443320Glutamine synthetase, catalytic domain
1211117Triosephosphate isomerase
222315151718110E1-E2 ATPase
14171415161389Core histone H2A/H2B/H3/H4
87668742Alpha amylase, catalytic domain
55766433Phorbol esters/diacylglycerol binding domain (C1 domain)
32332215Bacterial transferase hexapeptide (six repeats)
44335423tRNA synthetases class I (I, L, M and V)
14131515121281Cyclin, N-terminal domain
253239373533201Carboxylesterase family
44444424DNA polymerase family B
33333318ATP synthase subunit C
95191922579Peroxidase
88892237Beta-lactamase
65668435C-5 cytosine-specific DNA methylase
252631332320158Calcineurin-like phosphoesterase
14161313181690Cellulase (glycosyl hydrolase family 5)
45556530tRNA synthetases class II (D, K and N)
363638383936223Mitochondrial carrier protein
12141313141480Aminotransferase class I and II
44774430Phosphoribosyl transferase domain
13131313151380Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
32222213Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
12151514131281C2 domain
109212012880PH domain
995412847bZIP transcription factor
222614141722115Aldehyde dehydrogenase family
495499985347400Fungal Zn(2)-Cys(6) binuclear cluster domain
222521202522135Cytochrome b5-like Heme/Steroid binding domain
12222211Oxidoreductase molybdopterin binding domain
68897745Oxidoreductase NAD-binding domain
262624222723148SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
232121212321130Ubiquitin-conjugating enzyme
65555531Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
22222212Hsp90 protein
22332214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
1113Chitin recognition protein
23114314Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
91012146657Cupin
335763272-oxoacid dehydrogenases acyltransferase (catalytic domain)
33332216Catalase
1111116Disintegrin
32221111UDP-glucoronosyl and UDP-glucosyl transferase
55555530Aminotransferase class-III
22223213Ribosomal protein S19
1111116DNA gyrase B
22222212Thiamine pyrophosphate enzyme, central domain
33333318Lyase
1311118Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
22343216Indole-3-glycerol phosphate synthase
22242315Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
1212999960Kinesin motor domain
293334313328188DnaJ domain
16141515151489Proteasome subunit
55998743Major intrinsic protein
1111217ATP synthase
32112312Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
22112210Ribosomal protein L22p/L17e
22223112Ribosomal protein L14p/L23e
19171617101392Ubiquitin family
45556530Cofilin/tropomyosin-type actin-binding protein
2224321514-3-3 protein
1326Alkaline phosphatase
1111217Zinc carboxypeptidase
454575744541325Aldo/keto reductase family
8613138755Myb-like DNA-binding domain
5513135748Forkhead domain
11114Glycosyl hydrolases family 32 N-terminal domain
22112210Ribosomal protein L16p/L10e
22222212Ribosomal protein S14p/S29e
33774428FKBP-type peptidyl-prolyl cis-trans isomerase
224
4610103538Flavodoxin
11Protamine P1
11Tropomyosin
1121117Calreticulin family
56782230Common central domain of tyrosinase
77667740Aminotransferase class-V
22372218Ribonucleotide reductase, small chain
815464515845353DEAD/DEAH box helicase
1047998908772530Helicase conserved C-terminal domain
1111116Fructose-bisphosphate aldolase class-I
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22221211Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
44334523Pyridoxal-dependent decarboxylase conserved domain
75334426Citrate synthase, C-terminal domain
55555530GHMP kinases N terminal domain
67677639Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
88998951Pyridoxal-phosphate dependent enzyme
15161615151592NUDIX domain
44556529pfkB family carbohydrate kinase
9713139657Glycosyl hydrolases family 28
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
77778844Histidine phosphatase superfamily (branch 1)
1211128Thymidylate synthase
44444424ATP synthase alpha/beta chain, C terminal domain
34444221Calponin homology (CH) domain
22552218Glutamine amidotransferases class-II
22673222Ribosomal protein S15
35131312955Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
1212118Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22222212SRF-type transcription factor (DNA-binding and dimerisation domain)
99151614871GATA zinc finger
7725256979Amino acid permease
101212106757Prolyl oligopeptidase family
32222213Ribosomal protein L30p/L7e
111012129963Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
55665431Aconitase family (aconitate hydratase)
44565428Glycosyl hydrolase family 10
1122118Glycosyl hydrolases family 17
22112210Ribosomal protein S5, N-terminal domain
22222212Nucleoside diphosphate kinase
34113214Tetraspanin family
22222212Ribosomal protein S10p/S20e
78554332Arrestin (or S-antigen), N-terminal domain
1111217Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
11222210SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
710443331Polyprenyl synthetase
22222212Hexokinase
11127712857Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
32443420Rieske [2Fe-2S] domain
11114Phytochrome region
11Proton-conducting membrane transporter
7881010851Biotin-requiring enzyme
1111116Phosphofructokinase
12223212Ribosomal protein S17
1121128Hydroxymethylglutaryl-coenzyme A reductase
33443320FGGY family of carbohydrate kinases, N-terminal domain
98889749Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22443217Transcription factor TFIIB repeat
57996642Cytidine and deoxycytidylate deaminase zinc-binding region
1211117Molybdopterin oxidoreductase
8812148656Chromo (CHRromatin Organisation MOdifier) domain
22222212Phosphatidylinositol-specific phospholipase C, Y domain
22222313Phosphatidylinositol-specific phospholipase C, X domain
78666639D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
23333317Malic enzyme, N-terminal domain
11111166-phosphogluconate dehydrogenase, C-terminal domain
161522231212100Multicopper oxidase
8714168962WW domain
32222213Ribosomal RNA adenine dimethylase
140135158170166145914WD domain, G-beta repeat
44444424Heavy-metal-associated domain
33333318Adenylate kinase
22112210Phosphoglucomutase/phosphomannomutase, C-terminal domain
22112210Ribosomal protein S8
22232213Ribosomal protein S11
66776638LIM domain
44342421Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
22222212chorismate binding enzyme
3355422260s Acidic ribosomal protein
44444323Prenyltransferase and squalene oxidase repeat
56886538Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
11111211101166Bromodomain
98779747Acyl-CoA dehydrogenase, C-terminal domain
14141313131481Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
33332317Ribonuclease T2 family
54554427HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
172026241311111Serine carboxypeptidase
99899852Phosphatidylinositol 3- and 4-kinase
22222212Transketolase, thiamine diphosphate binding domain
21126Glycosyl hydrolases family 11
1113WHEP-TRS domain
22223213Inositol monophosphatase family
45754429Glutaredoxin
22442216Isocitrate lyase family
1111116Serine hydroxymethyltransferase
32336421Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
45443424KOW motif
1112218Ribosomal protein L34
11114Ribosomal protein L33
33333318RF-1 domain
22332214Sodium:solute symporter family
1122118Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111217IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
9811107853Protein phosphatase 2C
42322316Nucleotidyl transferase
55883534Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
131098111162Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
66675535Arginase family
611766642MCM P-loop domain
23222213Squalene/phytoene synthase
9951461013138FHA domain
393434323929207AMP-binding enzyme
11111412121474G-protein alpha subunit
261921211815120HMG (high mobility group) box
55888640His Kinase A (phospho-acceptor) domain
44442321Armadillo/beta-catenin-like repeat
131552611915175Tetratricopeptide repeat
33333419Ion transport protein
1211117DNA gyrase/topoisomerase IV, subunit A
810999550BRCA1 C Terminus (BRCT) domain
44666531Glycosyl transferases group 1
33552422Glycosyl transferase family 2
2215SAM domain (Sterile alpha motif)
44233319linker histone H1 and H5 family
1111228Ribosomal protein L7/L12 C-terminal domain
12551115Pectate lyase
222219ribonuclease
1111116Urease, gamma subunit
43333319CoA-ligase
897615853Phosphopantetheine attachment site
22222212Formyl transferase
11121111121269Metallopeptidase family M24
2213132335Leucine Rich Repeat
765149911133alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
55555530PB1 domain
32222213Staphylococcal nuclease homologue
12121110131472Rab-GTPase-TBC domain
1111116Tudor domain
22433216WH1 domain
33443320Zinc finger, ZZ type
1111116HRDC domain
88997849CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
45444324S1 RNA binding domain
1111116HIUase/Transthyretin family
44444424AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
32113212UvrD/REP helicase N-terminal domain
87558841Rhodanese-like domain
22222212Universal stress protein family
202045471913164Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
32222213AIR synthase related protein, N-terminal domain
55665532tRNA synthetase class II core domain (G, H, P, S and T)
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
42112212Glycosyl transferase family, a/b domain
2111117Class II Aldolase and Adducin N-terminal domain
54224421Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
45335424Fes/CIP4, and EFC/F-BAR homology domain
22862222IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
12441214Phospholipase D Active site motif
44313217Regulator of G protein signaling domain
55444426GTPase-activator protein for Ras-like GTPase
899106850RasGEF domain
68885742RasGEF N-terminal motif
12131413151279RhoGAP domain
14131313111377RhoGEF domain
44444424SPRY domain
46438328RNA polymerase Rpb1, domain 2
1111217Guanylate kinase
44554426Gelsolin repeat
6610107746UBA/TS-N domain
141819191614100PHD-finger
22112210GGL domain
55555530HECT-domain (ubiquitin-transferase)
1112117Helix-hairpin-helix motif
1111127MSP (Major sperm protein) domain
3510113436Ribonuclease III domain
55334424Region in Clathrin and VPS
33333318RanBP1 domain
22333215PPIC-type PPIASE domain
33322114Zn-finger in Ran binding protein and others
161623271611109Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111115B-box zinc finger
22242315Poly(ADP-ribose) polymerase catalytic domain
12222211Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
29333253242317751F-box domain
1111116Elongation factor 1 gamma, conserved domain
1111116Calpain family cysteine protease
22222212Copper fist DNA binding domain
78777743CRAL/TRIO domain
747348482927299BTB/POZ domain
11984124Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
34333420Voltage gated chloride channel
362244553643236Caspase domain
7817176661GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
161833331915134ABC transporter transmembrane region
33Integrase core domain
37433323FAD binding domain
1252111Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1211218HAMP domain
22222212ribosomal L5P family C-terminus
510665638Insulinase (Peptidase family M16)
44445425Dehydrogenase E1 component
1111116Lumazine binding domain
66667738Elongation factor G C-terminus
66664533HMGL-like
44443423DnaJ central domain
34223216Starch binding domain
33223215Ribosomal protein L1p/L10e family
1010689851Cation transporting ATPase, C-terminus
101189101058Cation transporter/ATPase, N-terminus
1111318dUTPase
64555429Aconitase C-terminal domain
33333318Amino acid kinase family
22113110N-(5'phosphoribosyl)anthranilate (PRA) isomerase
325512330Acyl transferase domain
1111116Urease beta subunit
22334216Dihydrodipicolinate synthetase family
201832331616135haloacid dehalogenase-like hydrolase
1111116Glycosyl hydrolases family 2
13101614171181Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
112Translation initiation factor IF-3, C-terminal domain
1311118Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
32332316Peptidase S24-like
111115Inorganic pyrophosphatase
141633121260Glycosyl hydrolases family 16
45334221Glycosyl hydrolases family 15
131239393114148NADH:flavin oxidoreductase / NADH oxidase family
11112173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
44553425Glycosyl hydrolase family 20, catalytic domain
77666638HhH-GPD superfamily base excision DNA repair protein
1111217AIR carboxylase
514937354140253GMC oxidoreductase
22223213Asparagine synthase
111421242013103Fungal cellulose binding domain
76666738Septin
2111117EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
43445424Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
64777536XPG N-terminal domain
89111013859Metallo-beta-lactamase superfamily
11237F5/8 type C domain
45444425Choline/Carnitine o-acyltransferase
1111116Putative esterase
1111116Glycosyl hydrolase family 9
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
64334323Dioxygenase
55446529CNH domain
22222212Diacylglycerol kinase catalytic domain
12141414131178Dual specificity phosphatase, catalytic domain
1111217MyTH4 domain
34452119P21-Rho-binding domain
13131212121375PX domain
22562320Ras association (RalGDS/AF-6) domain
44335423UBX domain
55546530VHS domain
1111116Phosphoinositide 3-kinase C2
22222313DAHP synthetase I family
55445427Carbon-nitrogen hydrolase
1111116N-acetyltransferase
1111116Prephenate dehydratase
44553425Syntaxin
55766534Pumilio-family RNA binding repeat
78666740Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
11112410ER lumen protein retaining receptor
22222212Glycoprotease family
1111116Histidinol dehydrogenase
33343319impB/mucB/samB family
112
1111116Ribosomal L15
33113314Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
1111116Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
56333222Glycosyl hydrolase family 7
112Ring hydroxylating alpha subunit (catalytic domain)
22222111RNA pseudouridylate synthase
77778743Histone deacetylase domain
32555222POT family
12222110PWWP domain
272431302518155SET domain
45774532Isochorismatase family
32332215Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
87667539XPG I-region
1111116Acetokinase family
1211117DNA photolyase
1113Cation-independent mannose-6-phosphate receptor repeat
1111116Cytosol aminopeptidase family, catalytic domain
3317Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
33333318Acyl CoA binding protein
69446433Cullin family
1111116Elongation factor TS
58856335FAD binding domain
108101318463O-methyltransferase domain
55552325EamA-like transporter family
235
78887745ThiF family
1111116Ribosomal family S4e
1111116Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
22223213Ammonium Transporter Family
33443320Sulfate permease family
1122219MATH domain
22222212Dehydratase family
33233216Transaldolase/Fructose-6-phosphate aldolase
33334319Mechanosensitive ion channel
22112210GTP cyclohydrolase II
11112173,4-dihydroxy-2-butanone 4-phosphate synthase
44444424Adaptor complexes medium subunit family
77989747Exonuclease
1121117Dipeptidyl peptidase IV (DPP IV) N-terminal region
12115NB-ARC domain
13121010111167Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
11114Sodium:sulfate symporter transmembrane region
1111217DNA-dependent RNA polymerase
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
34444423Synaptobrevin
1111116GMP synthase C terminal domain
11LAGLIDADG endonuclease
33333318Adenosine/AMP deaminase
34445424Oxidoreductase FAD-binding domain
11222210Thioesterase domain
22222212Histidine biosynthesis protein
33333318Glycosyltransferase family 20
2111117UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
1221219PAS fold
22222212Probable molybdopterin binding domain
54444425Sec1 family
22222212GDP dissociation inhibitor
88776642Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
44444424Initiation factor 2 subunit family
22127PQQ enzyme repeat
22222212Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
22222212Gamma-glutamyltranspeptidase
11114Ribosomal L40e family
1111116GrpE
33333318TatD related DNase
32222213Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
75227629Dynamin central region
222222126-O-methylguanine DNA methyltransferase, DNA binding domain
11441112Bacteriorhodopsin-like protein
22222212Carboxyl transferase domain
19161515141392UbiA prenyltransferase family
35443322Endoribonuclease L-PSP
22329Phosphorylase superfamily
112Mannose-6-phosphate isomerase
656612641Cys/Met metabolism PLP-dependent enzyme
98668744Glycosyl hydrolases family 31
1111116NADH ubiquinone oxidoreductase, 20 Kd subunit
1110867648ABC-2 type transporter
553316Bestrophin, RFP-TM, chloride channel
33223316Amino-transferase class IV
44445425CDP-alcohol phosphatidyltransferase
1111217Calpain large subunit, domain III
44554426