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PFAM Domains • Trichoderma citrinoviride TUCIM 6016 v4.0
Annotations/GenomesTrias1Triat2Trici1Trici4Triha1Trilo3Trire2TrireRUTC30_1TriviGv29_8_2TotalAnnotation Description
PFAMs
9,1179,1407,9197,92910,1857,5216,5077,8429,84476,004
117 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
465142465244444649420ATPase family associated with various cellular activities (AAA)
564752486147464762466ABC transporter
44334344433ATP synthase alpha/beta family, nucleotide-binding domain
141314141514141414126Elongation factor Tu GTP binding domain
121088119991086Helix-loop-helix DNA-binding domain
55334333534Hsp20/alpha crystallin family
88889878872Hsp70 protein
999108988979KH domain
1111111119SH2 domain
222121222222242222198SH3 domain
1010991010710984Actin
1171355882154806382171942Ankyrin repeat
42224222424PAN domain
77777777763ADP-ribosylation factor family
202019192216161721170Eukaryotic aspartyl protease
44444444436Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
1111111119Cytochrome c
11111121110Double-stranded RNA binding motif
181816161716201618155EF hand
11111111194Fe-4S binding domain
43222212220Fibronectin type III domain
22332222220Globin
182314133113101427163Glutathione S-transferase, C-terminal domain
11112111211Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
131077108581179Homeodomain
33223222322lactate/malate dehydrogenase, NAD binding domain
11Lipocalin / cytosolic fatty-acid binding protein family
45444444538Myosin head (motor domain)
72667373116666968118721Cytochrome P450
105112104107111101106108126980Protein kinase domain
222215152515141525168Pyridine nucleotide-disulphide oxidoreductase
242422232422232425211Ras family
151514131413131314124Response regulator receiver domain
23223323525RNase H
596055555856595857517RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
22112222216Copper/zinc superoxide dismutase (SODC)
22223223321Iron/manganese superoxide dismutases, alpha-hairpin domain
273617183415151529206Subtilase family
787459609054765986636Sugar (and other) transporter
121211111311111014105Thioredoxin
22223212218Trypsin
55555566547Tubulin/FtsZ family, GTPase domain
45444424435von Willebrand factor type A domain
646250537355674863535Zinc finger, C2H2 type
393837393939323738338Zinc finger, C3HC4 type (RING finger)
593510352951Zinc knuckle
33223222221Protein-tyrosine phosphatase
1601701251241991161181201811,313short chain dehydrogenase
7988575910649535192634Zinc-binding dehydrogenase
65555565547Thiolase, N-terminal domain
202218183216171626185Beta-ketoacyl synthase, N-terminal domain
556545555452Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
22111111212Enolase, C-terminal TIM barrel domain
1124Cytochrome C and Quinol oxidase polypeptide I
8899118791079Glutamine amidotransferase class-I
10101010101010101090TCP-1/cpn60 chaperonin family
22226222424Glutamine synthetase, catalytic domain
22222222218Triosephosphate isomerase
171616161818161719153E1-E2 ATPase
87889778971Core histone H2A/H2B/H3/H4
22Bacterial regulatory helix-turn-helix protein, lysR family
11Copper binding proteins, plastocyanin/azurin family
54446444540Alpha amylase, catalytic domain
12111221213Phorbol esters/diacylglycerol binding domain (C1 domain)
101288106881282Bacterial transferase hexapeptide (six repeats)
44334363434tRNA synthetases class I (I, L, M and V)
88778777968Cyclin, N-terminal domain
201914143314121328167Carboxylesterase family
44444444436DNA polymerase family B
46334444436ATP synthase subunit C
66668566756Peroxidase
1619871988918112Beta-lactamase
22222212217C-5 cytosine-specific DNA methylase
293025252728272632249Calcineurin-like phosphoesterase
11107796451069Cellulase (glycosyl hydrolase family 5)
87999787872tRNA synthetases class II (D, K and N)
383835344035353638329Mitochondrial carrier protein
212018182818161829186Aminotransferase class I and II
810888888874Phosphoribosyl transferase domain
101099101010101088Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111119Phosphoglycerate kinase
22222122217Ribosomal protein S4/S9 N-terminal domain
22222222319Ribosomal protein S12/S23
44113111218Bacterial regulatory helix-turn-helix proteins, AraC family
1111111119Chaperonin 10 Kd subunit
141213131415141313121C2 domain
191720201916191917166PH domain
121212111312111414111bZIP transcription factor
262523233919202031226Aldehyde dehydrogenase family
3252761962144052131922113102,342Fungal Zn(2)-Cys(6) binuclear cluster domain
242421212719212125203Cytochrome b5-like Heme/Steroid binding domain
43544444436Oxidoreductase molybdopterin binding domain
201818182116141823166Oxidoreductase NAD-binding domain
262724242825252427230SNF2 family N-terminal domain
22222222218Ribosomal protein S7p/S5e
192019192021202020178Ubiquitin-conjugating enzyme
77679777865Isocitrate/isopropylmalate dehydrogenase
22222222218Ribosomal Proteins L2, RNA binding domain
1111111119Hsp90 protein
22322122218Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
65115122528Chitin recognition protein
33333333327Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
45334433433Cupin
33223223222Annexin
1111111119Eukaryotic-type carbonic anhydrase
343333334292-oxoacid dehydrogenases acyltransferase (catalytic domain)
77777777763Catalase
1122111110Disintegrin
122212212UDP-glucoronosyl and UDP-glucosyl transferase
10899118881081Aminotransferase class-III
22222222218Ribosomal protein S19
1111111119DNA gyrase B
98448545956Thiamine pyrophosphate enzyme, central domain
43445333332Lyase
22222222218Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111111119Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111119Indole-3-glycerol phosphate synthase
1113Aromatic amino acid lyase
1111111119Pyruvate kinase, barrel domain
91099101011111089Kinesin motor domain
252625262626262625231DnaJ domain
141414141414141414126Proteasome subunit
67778777864Major intrinsic protein
1111111119ATP synthase
24224222222Glycosyl hydrolase family 1
11111111193'5'-cyclic nucleotide phosphodiesterase
1111111119Profilin
1111111119Ribosomal protein L22p/L17e
22222222218Ribosomal protein L14p/L23e
1112101012138111299Ubiquitin family
55555435542Cofilin/tropomyosin-type actin-binding protein
2222222231914-3-3 protein
22333233324Alkaline phosphatase
44444444436Zinc carboxypeptidase
363627294628272645300Aldo/keto reductase family
141313141513141415125Myb-like DNA-binding domain
44444444436Forkhead domain
2114Glycosyl hydrolases family 32 N-terminal domain
1111111119Ribosomal protein L16p/L10e
22222212217Ribosomal protein S14p/S29e
33333434329FKBP-type peptidyl-prolyl cis-trans isomerase
1111111119Glutathione peroxidase
22222222218
87778777866Flavodoxin
1111111119Calreticulin family
43443323430Common central domain of tyrosinase
988810738869Aminotransferase class-V
1111111119Ribonucleotide reductase, small chain
383740383836493836350DEAD/DEAH box helicase
727473737975757273666Helicase conserved C-terminal domain
1111111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222222218Ribosomal protein L23
1111111119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22112122215Ribosomal protein L5
98557466757Pyridoxal-dependent decarboxylase conserved domain
32222222219Citrate synthase, C-terminal domain
55655355544GHMP kinases N terminal domain
56447355746Biotin carboxylase, N-terminal domain
1111111119Tryptophan synthase alpha chain
141312121512121215117Pyridoxal-phosphate dependent enzyme
181815152115151622155NUDIX domain
44664646545pfkB family carbohydrate kinase
56554443642Glycosyl hydrolases family 28
22222222218Ribosomal protein L3
22222222218Ribosomal protein L11, RNA binding domain
111111111496111296Histidine phosphatase superfamily (branch 1)
1111111119Thymidylate synthase
11114Lipoxygenase
44334344433ATP synthase alpha/beta chain, C terminal domain
55555455544Calponin homology (CH) domain
45556545645Glutamine amidotransferases class-II
22222222218Ribosomal protein S15
11111117Thaumatin family
22222222218Fructose-1-6-bisphosphatase, N-terminal domain
1111111119Ribonucleotide reductase, all-alpha domain
22222222218Ribosomal protein S2
32222222219SRF-type transcription factor (DNA-binding and dimerisation domain)
88888868870GATA zinc finger
363535353932333336314Amino acid permease
33547414536Prolyl oligopeptidase family
22222222218Ribosomal protein L30p/L7e
88668747862Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
66557444647Aconitase family (aconitate hydratase)
21112111212Glycosyl hydrolase family 10
33332212322Glycosyl hydrolases family 17
22222222218Ribosomal protein S5, N-terminal domain
1111111119Nucleoside diphosphate kinase
1111111119Ribosomal protein S10p/S20e
32332333224Arrestin (or S-antigen), N-terminal domain
1111111119Phosphoglucose isomerase
1111111119Carbohydrate phosphorylase
1111111119SecY translocase
1111111119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22332222220Ribosomal protein L6
43444333331Polyprenyl synthetase
44335444536Hexokinase
101099118991186Dynamin family
21111111110Transcription factor TFIID (or TATA-binding protein, TBP)
44344444435Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
112Phytochrome region
22Proton-conducting membrane transporter
788796671068Biotin-requiring enzyme
1111111119Phosphofructokinase
22222222218Ribosomal protein S17
1111111119Hydroxymethylglutaryl-coenzyme A reductase
33333333327FGGY family of carbohydrate kinases, N-terminal domain
151515152214121318139Enoyl-CoA hydratase/isomerase
22222222218Ribosomal protein S9/S16
22222222218Transcription factor TFIIB repeat
67557566653Cytidine and deoxycytidylate deaminase zinc-binding region
11111211110Molybdopterin oxidoreductase
67777616956Chromo (CHRromatin Organisation MOdifier) domain
44224444432Phosphatidylinositol-specific phospholipase C, Y domain
55335565643Phosphatidylinositol-specific phospholipase C, X domain
101088135561277D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222222218Malic enzyme, N-terminal domain
1113PEP-utilising enzyme, mobile domain
11Bacterial regulatory proteins, gntR family
221121111126-phosphogluconate dehydrogenase, C-terminal domain
1010998788978Multicopper oxidase
1111111110810101092WW domain
1111111119Ribosomal RNA adenine dimethylase
111111118Yeast PIR protein repeat
1281381171181471141231211481,154WD domain, G-beta repeat
55444555542Heavy-metal-associated domain
43445444335Adenylate kinase
22222222218Phosphoglucomutase/phosphomannomutase, C-terminal domain
11112222214Ribosomal protein S8
1111111119Ribosomal protein S11
43444344434LIM domain
121511516Matrixin
22111211112Regulator of chromosome condensation (RCC1) repeat
22222222218Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
22222222218chorismate binding enzyme
3323333332660s Acidic ribosomal protein
44444444436Prenyltransferase and squalene oxidase repeat
67666756857Protein kinase C terminal domain
1111111119Single-strand binding protein family
1111111119S-adenosylmethionine synthetase, N-terminal domain
77777777763Bromodomain
101088115881078Acyl-CoA dehydrogenase, C-terminal domain
141313141414151414125Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
34334333531Ribonuclease T2 family
33333333428HSF-type DNA-binding
22112222216SRP54-type protein, GTPase domain
1122111110Urease alpha-subunit, N-terminal domain
67558455752Serine carboxypeptidase
88778888870Phosphatidylinositol 3- and 4-kinase
22223222219Transketolase, thiamine diphosphate binding domain
44334333431Glycosyl hydrolases family 11
44445444538Inositol monophosphatase family
44444434435Glutaredoxin
54335323432Isocitrate lyase family
22222222218Serine hydroxymethyltransferase
22226222323Iron-containing alcohol dehydrogenase
22222122217Ribosomal protein L10
33333263329KOW motif
11Negative factor, (F-Protein) or Nef
32233323324RF-1 domain
54445555542Sodium:solute symporter family
1111111119Imidazoleglycerol-phosphate dehydratase
1111111119DNA polymerase family A
1111111119IMP dehydrogenase / GMP reductase domain
1111111119Glucose-6-phosphate dehydrogenase, NAD binding domain
11ROK family
66777566757Protein phosphatase 2C
33333233326Nucleotidyl transferase
7964135441062Carbonic anhydrase
11111121110Phosphoribulokinase / Uridine kinase family
77876566658Fatty acid desaturase
66666666654MutS domain V
1111111119Delta-aminolevulinic acid dehydratase
53335333432Arginase family
66656666653MCM P-loop domain
1111111119Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
11Bacterial extracellular solute-binding proteins, family 3
910991088111286FHA domain
584943435732374064423AMP-binding enzyme
33333333327G-protein alpha subunit
767878781068HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1212101011910101195His Kinase A (phospho-acceptor) domain
33333332326Armadillo/beta-catenin-like repeat
293520213622242340250Tetratricopeptide repeat
44443454436Ion transport protein
1111111119DNA gyrase/topoisomerase IV, subunit A
66Binding-protein-dependent transport system inner membrane component
11111111111111111199BRCA1 C Terminus (BRCT) domain
66666666654Glycosyl transferases group 1
34444434333Glycosyl transferase family 2
11111131111SAM domain (Sterile alpha motif)
1111111119linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
11Pectate lyase
32222112217ribonuclease
11221111111Urease, gamma subunit
55555455544CoA-ligase
332923234214192143247Phosphopantetheine attachment site
33443333329Formyl transferase
9111010109891086Metallopeptidase family M24
151416161414161413132Leucine Rich Repeat
576937408038224077460alpha/beta hydrolase fold
33333333327RNA polymerase Rpb2, domain 6
34444444435PB1 domain
22112222216Staphylococcal nuclease homologue
1010111110910101091Rab-GTPase-TBC domain
11111117Tudor domain
1122111110WH1 domain
44555455340Zinc finger, ZZ type
1111111119HRDC domain
99889999979CBS domain
22222222218Ribosomal protein L13
22222222218Ribosomal protein L4/L1 family
11211111110Clp protease
55555555545S1 RNA binding domain
1111111119HIUase/Transthyretin family
54334333432AhpC/TSA family
44444444436tRNA synthetases class I (W and Y)
112UvrD/REP helicase N-terminal domain
64779644855Rhodanese-like domain
22222222218Universal stress protein family
555246456144404965457Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
1111111119C-terminal regulatory domain of Threonine dehydratase
22222222218AIR synthase related protein, N-terminal domain
9108999810981tRNA synthetase class II core domain (G, H, P, S and T)
1111111119SpoU rRNA Methylase family
22332222220Tetrapyrrole (Corrin/Porphyrin) Methylases
1111111119Glycosyl transferase family, a/b domain
1111111119PDZ domain
44223333327Class II Aldolase and Adducin N-terminal domain
44334444434Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
53555535541Fes/CIP4, and EFC/F-BAR homology domain
56666555549IQ calmodulin-binding motif
22222222218Phosphoinositide 3-kinase family, accessory domain (PIK domain)
66555656549Phospholipase D Active site motif
1111111119Regulator of G protein signaling domain
44444444436GTPase-activator protein for Ras-like GTPase
44444444436RasGEF domain
44444424434RasGEF N-terminal motif
88888888872RhoGAP domain
56446656648RhoGEF domain
35334333330SPRY domain
43333333328RNA polymerase Rpb1, domain 2
22333233324Guanylate kinase
44444444436Gelsolin repeat
9107710778974UBA/TS-N domain
191817172015151719157PHD-finger
1111111119GGL domain
66666666654HECT-domain (ubiquitin-transferase)
111112119Helix-hairpin-helix motif
1111111119MSP (Major sperm protein) domain
55445444540Ribonuclease III domain
33333323326Region in Clathrin and VPS
33233333326RanBP1 domain
22222222218PPIC-type PPIASE domain
32223322322Zn-finger in Ran binding protein and others
181615142015151516144Zinc finger C-x8-C-x5-C-x3-H type (and similar)
22222212318Poly(ADP-ribose) polymerase catalytic domain
111111118Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
586344476645515661491F-box domain
1111111119Elongation factor 1 gamma, conserved domain
33333333428Calpain family cysteine protease
22222122217Copper fist DNA binding domain
65555555647CRAL/TRIO domain
66810710591071BTB/POZ domain
56334344436Ricin-type beta-trefoil lectin domain
1111111119Inhibitor of Apoptosis domain
33333333327Voltage gated chloride channel
23224222423Caspase domain
573410554851GDSL-like Lipase/Acylhydrolase
1111111119Poly-adenylate binding protein, unique domain
312424243624252336247ABC transporter transmembrane region
11Integrase core domain
76667566756FAD binding domain
21141212259101229144Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111111119HAMP domain
22112122215ribosomal L5P family C-terminus
55445555543Insulinase (Peptidase family M16)
33113333424Dehydrogenase E1 component
1111111119Lumazine binding domain
66666656653Elongation factor G C-terminus
54446444540HMGL-like
44444344435DnaJ central domain
33111111113Starch binding domain
22222222218Ribosomal protein L1p/L10e family
98891110991184Cation transporting ATPase, C-terminus
11101010121210111399Cation transporter/ATPase, N-terminus
21222111214dUTPase
765