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PFAM Domains • Yarrowia lipolytica YB419 v1.0
Annotations/GenomesArtfe1_2Kurca1Nadfu1Sacce1Spola1Yarli1YarliYB392YarliYB419YarliYB420YarliYB566YarliYB567Yarlip1TotalAnnotation Description
PFAMs
4,7416,6555,3245,5356,2005,7376,9366,9256,9576,9566,9606,77575,701
333337333233313131323230388ATPase family associated with various cellular activities (AAA)
222926312432323232323232356ABC transporter
44444444444448ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
131314161414141414141414168Elongation factor Tu GTP binding domain
10987129888887102Helix-loop-helix DNA-binding domain
42422233333233Hsp20/alpha crystallin family
98101471110101311123118Hsp70 protein
8698101177777895KH domain
11114SH2 domain
181521221020141414131313187SH3 domain
11111191110101010101010123Actin
124151842044444497Ankyrin repeat
68777777777683ADP-ribosylation factor family
30767437414141414140336Eukaryotic aspartyl protease
33433444444444Cyclic nucleotide-binding domain
11221111111114Cytochrome c
31222211111118Double-stranded RNA binding motif
15151121744444484EF hand
111254Fe-4S binding domain
1111211111112Fibronectin type III domain
21221311111117Globin
454611088888878Glutathione S-transferase, C-terminal domain
21232111111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
52683554544556Homeodomain
11Laminin EGF domain
23232222232227lactate/malate dehydrogenase, NAD binding domain
33553555555554Myosin head (motor domain)
3443817171717171717141Cytochrome P450
97989811493838585858585861,094Protein kinase domain
611995577777787Pyridine nucleotide-disulphide oxidoreductase
222224242324242424242424283Ras family
56944777777777Response regulator receiver domain
11111213131312121392RNase H
474858485755525252525251624RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Retroviral aspartyl protease
2020Reverse transcriptase (RNA-dependent DNA polymerase)
22111222222221Copper/zinc superoxide dismutase (SODC)
11111222222219Iron/manganese superoxide dismutases, alpha-hairpin domain
5354416171717171717139Subtilase family
185514342026353637353537382Sugar (and other) transporter
8891099999999107Thioredoxin
11125Trypsin
33444444444446Tubulin/FtsZ family, GTPase domain
32194138123410101010109235Zinc finger, C2H2 type
3023122236333333141Zinc finger, C3HC4 type (RING finger)
33363632333341Zinc knuckle
22232222222225Protein-tyrosine phosphatase
143020132029272727272726287short chain dehydrogenase
121815171920161616161610191Zinc-binding dehydrogenase
22324344444440Thiolase, N-terminal domain
22222222222224Beta-ketoacyl synthase, N-terminal domain
323223111111212Fe-2S iron-sulfur cluster binding domain
11151111111116Enolase, C-terminal TIM barrel domain
77898888888794Glutamine amidotransferase class-I
101010101010101010101010120TCP-1/cpn60 chaperonin family
21211222222221Glutamine synthetase, catalytic domain
11111222222219Triosephosphate isomerase
7111112159141414141414149E1-E2 ATPase
1281310810101010111010122Core histone H2A/H2B/H3/H4
11481111111122Alpha amylase, catalytic domain
11111111111112Phorbol esters/diacylglycerol binding domain (C1 domain)
56645633333249Bacterial transferase hexapeptide (six repeats)
45435355555453tRNA synthetases class I (I, L, M and V)
11101013108999999116Cyclin, N-terminal domain
431444444436Carboxylesterase family
44444444444448DNA polymerase family B
33333333333336ATP synthase subunit C
22213333333331Peroxidase
132333333327Beta-lactamase
191718211732323232323230314Calcineurin-like phosphoesterase
45343333333340Cellulase (glycosyl hydrolase family 5)
66666666666672tRNA synthetases class II (D, K and N)
313238343439383838383837435Mitochondrial carrier protein
101611111214141414141414158Aminotransferase class I and II
10610114844444473Phosphoribosyl transferase domain
7101281210111111111111125Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111111111112Phosphoglycerate kinase
22332222222226Ribosomal protein S4/S9 N-terminal domain
22332222222226Ribosomal protein S12/S23
2222222216Bacterial regulatory helix-turn-helix proteins, AraC family
11211111111113Chaperonin 10 Kd subunit
999119877777696C2 domain
91215241118111111111111155PH domain
66887788888890bZIP transcription factor
714991013161616161615157Aldehyde dehydrogenase family
489439535651505150505151644Fungal Zn(2)-Cys(6) binuclear cluster domain
13121371515141414141414159Cytochrome b5-like Heme/Steroid binding domain
11Oxidoreductase molybdopterin binding domain
67789766666680Oxidoreductase NAD-binding domain
171918171819202020202020228SNF2 family N-terminal domain
22322222222225Ribosomal protein S7p/S5e
121315141316161616161616179Ubiquitin-conjugating enzyme
65676555555565Isocitrate/isopropylmalate dehydrogenase
22332222222226Ribosomal Proteins L2, RNA binding domain
11221111111114Hsp90 protein
22222222222224Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111111111112Dihydrofolate reductase
32331222222226Cysteine-rich secretory protein family
11111111111112Ribosomal protein S3, C-terminal domain
111111118Annexin
223223333333322-oxoacid dehydrogenases acyltransferase (catalytic domain)
11222333333329Catalase
1111111119Disintegrin
111111118UDP-glucoronosyl and UDP-glucosyl transferase
48844666666670Aminotransferase class-III
32322222222226Ribosomal protein S19
11111111111112DNA gyrase B
45476444444454Thiamine pyrophosphate enzyme, central domain
43333333333337Lyase
22232222222225Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11211111111113Adenylate and Guanylate cyclase catalytic domain
11211111111113ATP synthase delta (OSCP) subunit
1111111111111Orotidine 5'-phosphate decarboxylase / HUMPS family
11111111111112Indole-3-glycerol phosphate synthase
11222111111115Pyruvate kinase, barrel domain
661066999999997Kinesin motor domain
232325212431262626262626303DnaJ domain
141414141414141414141414168Proteasome subunit
11143333333331Major intrinsic protein
11111111111112ATP synthase
33Glycosyl hydrolase family 1
111111111111123'5'-cyclic nucleotide phosphodiesterase
11111111111112Profilin
22222222222224Ribosomal protein L22p/L17e
22232222222225Ribosomal protein L14p/L23e
7711999999999106Ubiquitin family
44234344444444Cofilin/tropomyosin-type actin-binding protein
1122222222222214-3-3 protein
1111111111111Alkaline phosphatase
11111111111112Zinc carboxypeptidase
823816141717171717176177Aldo/keto reductase family
129141541455555598Myb-like DNA-binding domain
33343333333337Forkhead domain
11114Glycosyl hydrolases family 32 N-terminal domain
12112122222220Ribosomal protein L16p/L10e
22332122222225Ribosomal protein S14p/S29e
33343332322334FKBP-type peptidyl-prolyl cis-trans isomerase
21231111111116Glutathione peroxidase
11215
547751099999891Flavodoxin
11211111111113Calreticulin family
66436666666667Aminotransferase class-V
21121111111114Ribonucleotide reductase, small chain
333936563334393939393938464DEAD/DEAH box helicase
555859795362595960606159724Helicase conserved C-terminal domain
11111111111112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222222222224Ribosomal protein L23
1111111111212Pyridoxal-dependent decarboxylase, C-terminal sheet domain
12232111111117Ribosomal protein L5
13323333333333Pyridoxal-dependent decarboxylase conserved domain
21333233333332Citrate synthase, C-terminal domain
44564555555558GHMP kinases N terminal domain
55575776777775Biotin carboxylase, N-terminal domain
11111111111112Tryptophan synthase alpha chain
67876999999997Pyridoxal-phosphate dependent enzyme
8710789999999103NUDIX domain
44444444444448pfkB family carbohydrate kinase
112Glycosyl hydrolases family 28
66666636Luciferase-like monooxygenase
22222222222224Ribosomal protein L3
22332222222226Ribosomal protein L11, RNA binding domain
111313121210101010101010131Histidine phosphatase superfamily (branch 1)
1111111111111Thymidylate synthase
44444444444448ATP synthase alpha/beta chain, C terminal domain
43544555555555Calponin homology (CH) domain
52673533333346Glutamine amidotransferases class-II
22223222222225Ribosomal protein S15
11111111111112Fructose-1-6-bisphosphatase, N-terminal domain
12122222222222Ribonucleotide reductase, all-alpha domain
22232222222225Ribosomal protein S2
21242222222225SRF-type transcription factor (DNA-binding and dimerisation domain)
8910107777777793GATA zinc finger
131323241031171717171717216Amino acid permease
23222111111118Prolyl oligopeptidase family
33443222222231Ribosomal protein L30p/L7e
65863444444456Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444444444448Aconitase family (aconitate hydratase)
64333433333341Glycosyl hydrolases family 17
22222222222123Ribosomal protein S5, N-terminal domain
11111111111112Nucleoside diphosphate kinase
22222122222223Ribosomal protein S10p/S20e
26337455555555Arrestin (or S-antigen), N-terminal domain
11111111111112Phosphoglucose isomerase
11111111111112Carbohydrate phosphorylase
12222222222223SecY translocase
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
33332222222228Ribosomal protein L6
33333333333336Polyprenyl synthetase
34452333333339Hexokinase
34435455555553Dynamin family
11111111111112Transcription factor TFIID (or TATA-binding protein, TBP)
12112111111114Rieske [2Fe-2S] domain
66787998999895Biotin-requiring enzyme
22322111111118Phosphofructokinase
22332222222226Ribosomal protein S17
11121111111113Hydroxymethylglutaryl-coenzyme A reductase
34333333333337FGGY family of carbohydrate kinases, N-terminal domain
434341099999982Enoyl-CoA hydratase/isomerase
22332212222225Ribosomal protein S9/S16
23232222222226Transcription factor TFIIB repeat
67666666666673Cytidine and deoxycytidylate deaminase zinc-binding region
111111111110Molybdopterin oxidoreductase
22222222222224Chromo (CHRromatin Organisation MOdifier) domain
11111111111112Phosphatidylinositol-specific phospholipase C, Y domain
12112122222220Phosphatidylinositol-specific phospholipase C, X domain
464481416161616163123D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
11111111111112Malic enzyme, N-terminal domain
111211111111136-phosphogluconate dehydrogenase, C-terminal domain
22231333333331Multicopper oxidase
471056655555568WW domain
22222222222224Ribosomal RNA adenine dimethylase
5310877777768Yeast PIR protein repeat
85861048892949999999999991,143WD domain, G-beta repeat
24334444444444Heavy-metal-associated domain
33333333333336Adenylate kinase
23233333333334Phosphoglucomutase/phosphomannomutase, C-terminal domain
13222233333330Ribosomal protein S8
11221111111114Ribosomal protein S11
53342444444445LIM domain
12213144444434Regulator of chromosome condensation (RCC1) repeat
22432222222227Ribosomal protein S13/S18
22222222222224chorismate binding enzyme
5555444444445260s Acidic ribosomal protein
43444433333341Prenyltransferase and squalene oxidase repeat
74885744444463Protein kinase C terminal domain
11111111111112Single-strand binding protein family
11222111111115S-adenosylmethionine synthetase, N-terminal domain
108111089999999110Bromodomain
561110101010101082Acyl-CoA dehydrogenase, C-terminal domain
131413161214131313131313160Ubiquitin carboxyl-terminal hydrolase
1113Ribosomal protein L36
31111222222221Ribonuclease T2 family
44454333333342HSF-type DNA-binding
22222222222224SRP54-type protein, GTPase domain
433331010101010101086Serine carboxypeptidase
977988999999102Phosphatidylinositol 3- and 4-kinase
13222122222223Transketolase, thiamine diphosphate binding domain
12132222222223Inositol monophosphatase family
44774444444454Glutaredoxin
21222222233225Isocitrate lyase family
22222222222224Serine hydroxymethyltransferase
1111111119Iron-containing alcohol dehydrogenase
23323222222227Ribosomal protein L10
31774322222237KOW motif
11111111111112Ribosomal protein L34
22223233333331RF-1 domain
45112566666654Sodium:solute symporter family
11111111111112Imidazoleglycerol-phosphate dehydratase
11111111111112DNA polymerase family A
12151111111117IMP dehydrogenase / GMP reductase domain
11211111111113Glucose-6-phosphate dehydrogenase, NAD binding domain
66875666666674Protein phosphatase 2C
13324333333334Nucleotidyl transferase
11112111111113Carbonic anhydrase
22223155555542Phosphoribulokinase / Uridine kinase family
55514444444448Fatty acid desaturase
44464444444450MutS domain V
11111111111112Delta-aminolevulinic acid dehydratase
23112222222223Arginase family
66666666666672MCM P-loop domain
12113122222221Squalene/phytoene synthase
698147788888899FHA domain
9811101318191919191918182AMP-binding enzyme
22222222222224G-protein alpha subunit
54676888888884HMG (high mobility group) box
23711444444442His Kinase A (phospho-acceptor) domain
42323222222228Armadillo/beta-catenin-like repeat
17132221922111111111110169Tetratricopeptide repeat
11221111111114Ion transport protein
11111111111112DNA gyrase/topoisomerase IV, subunit A
8591031099999999BRCA1 C Terminus (BRCT) domain
43443544444447Glycosyl transferases group 1
22222222222224Glycosyl transferase family 2
11222222216SAM domain (Sterile alpha motif)
11111111111112linker histone H1 and H5 family
11111111111112Ribosomal protein L7/L12 C-terminal domain
22323333333333CoA-ligase
33223333333334Phosphopantetheine attachment site
22222222222224Formyl transferase
79869788888894Metallopeptidase family M24
153161111011111162Leucine Rich Repeat
145111571755555599alpha/beta hydrolase fold
33433333333337RNA polymerase Rpb2, domain 6
33211333333230PB1 domain
22212222222223Staphylococcal nuclease homologue
691081311111111111111123Rab-GTPase-TBC domain
1111111111111Tudor domain
11111111111112WH1 domain
33122333333332Zinc finger, ZZ type
11121111111113HRDC domain
87111089888888101CBS domain
22232222222225Ribosomal protein L13
12332122222224Ribosomal protein L4/L1 family
1111111119Clp protease
34445444444347S1 RNA binding domain
1111111111111HIUase/Transthyretin family
34544444444448AhpC/TSA family
44444444444448tRNA synthetases class I (W and Y)
22231211111118UvrD/REP helicase N-terminal domain
56597610101010101098Rhodanese-like domain
1221233333326Universal stress protein family
11918131026212121212121213Acetyltransferase (GNAT) family
11111111111112SecE/Sec61-gamma subunits of protein translocation complex
11111111111112C-terminal regulatory domain of Threonine dehydratase
22222222222224AIR synthase related protein, N-terminal domain
87897877777789tRNA synthetase class II core domain (G, H, P, S and T)
22222222222224SpoU rRNA Methylase family
12222222222223Tetrapyrrole (Corrin/Porphyrin) Methylases
11111111111112Glycosyl transferase family, a/b domain
11125PDZ domain