PFAM Domains • Mrakia frigida ATCC 22029 v1.0
Annotations/GenomesCrycu1Cryne_H99_1Cryne_JEC21_1Cryvi1Crywi1Diocr1Fibin1Mrafri1Treen1Treme1Trich1Trigue1Triol1TotalAnnotation Description
PFAMs
6,3095,7325,7905,5637,0229,5567,4007,8857,6625,5656,1758,5656,30989,533
1121221107 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
33313134365737343336363134463ATPase family associated with various cellular activities (AAA)
36343338358335503734354837535ABC transporter
444445444444453ATP synthase alpha/beta family, nucleotide-binding domain
21115EGF-like domain
13131313131913181213131313179Elongation factor Tu GTP binding domain
999891278988119116Helix-loop-helix DNA-binding domain
123Hsp20/alpha crystallin family
78987971077877101Hsp70 protein
8888711666776896KH domain
11114SH2 domain
22222019122914111122221623243SH3 domain
910129101910111099109137Actin
19181516333161517419166Ankyrin repeat
1111215PAN domain
88878128988868106ADP-ribosylation factor family
198891111106129144918184Eukaryotic aspartyl protease
333333333332338Cyclic nucleotide-binding domain
112Cytochrome b/b6/petB
1111111111111Cytochrome c
2221131112117Double-stranded RNA binding motif
17161614222241516216142EF hand
12214111134Fe-4S binding domain
2111111210Fibronectin type III domain
1111116Globin
6864313465288780Glutathione S-transferase, C-terminal domain
222223212122225Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
465448754455465Homeodomain
112Laminin EGF domain
222226222232231lactate/malate dehydrogenase, NAD binding domain
644557559757675Myosin head (motor domain)
165516922921108112216170Cytochrome P450
94899610410316699107959695109951,348Protein kinase domain
15111012111612131311131615168Pyridine nucleotide-disulphide oxidoreductase
23232523233125262524242223317Ras family
1310102222171217129131113181Response regulator receiver domain
211221123211221RNase H
55626552488155875459574755777RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
81220Reverse transcriptase (RNA-dependent DNA polymerase)
44Serpin (serine protease inhibitor)
411112111132423Copper/zinc superoxide dismutase (SODC)
111112121121116Iron/manganese superoxide dismutases, alpha-hairpin domain
233336353322240Subtilase family
386257295474654488255212539752Sugar (and other) transporter
1081089129109810910122Thioredoxin
444447454444456Tubulin/FtsZ family, GTPase domain
5216142425von Willebrand factor type A domain
272426248399101128291228275Zinc finger, C2H2 type
4032363356076637381041351Zinc finger, C3HC4 type (RING finger)
811109620979150777260Zinc knuckle
222243322223231Protein-tyrosine phosphatase
47353438448555377234445749631short chain dehydrogenase
36252827305430282717365236426Zinc-binding dehydrogenase
833435433378862Thiolase, N-terminal domain
111112111111114Beta-ketoacyl synthase, N-terminal domain
4355272224314442Fe-2S iron-sulfur cluster binding domain
123111111112117Enolase, C-terminal TIM barrel domain
1236Cytochrome C and Quinol oxidase polypeptide I
1135Cytochrome C oxidase subunit II, periplasmic domain
777891181098787106Glutamine amidotransferase class-I
1010101010131010810111210134TCP-1/cpn60 chaperonin family
213ATP synthase A chain
222222232221226Glutamine synthetase, catalytic domain
111111121111114Triosephosphate isomerase
1110101113161416159101511161E1-E2 ATPase
1288891611251011111012151Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
7911911201114129757132Alpha amylase, catalytic domain
433334323323440Phorbol esters/diacylglycerol binding domain (C1 domain)
5995515656864689Bacterial transferase hexapeptide (six repeats)
333346444334347tRNA synthetases class I (I, L, M and V)
999891411111099109127Cyclin, N-terminal domain
11458868475101611103Carboxylesterase family
444446444444454DNA polymerase family B
352333343333341ATP synthase subunit C
1212118Legume lectin domain
322224222224332Peroxidase
11231785728221196Beta-lactamase
22232121217C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
1113Nitrogenase component 1 type Oxidoreductase
18192017173215221818211816251Calcineurin-like phosphoesterase
355814111591564174116Cellulase (glycosyl hydrolase family 5)
566669566564575tRNA synthetases class II (D, K and N)
36343432375737403433394336492Mitochondrial carrier protein
16161516162217232116212016235Aminotransferase class I and II
7776311453673776Phosphoribosyl transferase domain
12131312121812141212121312167Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
112111111111114Phosphoglycerate kinase
222222212222225Ribosomal protein S4/S9 N-terminal domain
222223222222227Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
11112111111113Chaperonin 10 Kd subunit
14121211101710111112111214157C2 domain
151616105219981714916165PH domain
67979912131156116111bZIP transcription factor
2014141014151611159182319198Aldehyde dehydrogenase family
105777758661018169136531001141021,139Fungal Zn(2)-Cys(6) binuclear cluster domain
23192018203219252117212023278Cytochrome b5-like Heme/Steroid binding domain
2428Oxidoreductase molybdopterin binding domain
977881057759129103Oxidoreductase NAD-binding domain
20212119273523232319212420296SNF2 family N-terminal domain
221224222222227Ribosomal protein S7p/S5e
19191916162820201820191819251Ubiquitin-conjugating enzyme
6786811666578690Isocitrate/isopropylmalate dehydrogenase
122223221222225Ribosomal Proteins L2, RNA binding domain
222214222222227Hsp90 protein
222223222222227Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111211111113Dihydrofolate reductase
4212263133411547Cysteine-rich secretory protein family
11111111111112Ribosomal protein S3, C-terminal domain
312131314Cupin
112112121111116Annexin
2125Eukaryotic-type carbonic anhydrase
112Chalcone and stilbene synthases, N-terminal domain
3332253233433392-oxoacid dehydrogenases acyltransferase (catalytic domain)
245333222125236Catalase
122112121111117Disintegrin
238478436UDP-glucoronosyl and UDP-glucosyl transferase
1089571011514691210116Aminotransferase class-III
222224222222228Ribosomal protein S19
111112111111114DNA gyrase B
422433252235441Thiamine pyrophosphate enzyme, central domain
333335335344345Lyase
222222222221225Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
12115Sodium:neurotransmitter symporter family
111112111111114Adenylate and Guanylate cyclase catalytic domain
111112111111114ATP synthase delta (OSCP) subunit
111111111111113Orotidine 5'-phosphate decarboxylase / HUMPS family
111112111111114Indole-3-glycerol phosphate synthase
1113Aromatic amino acid lyase
112111121111115Pyruvate kinase, barrel domain
910109101310119129109131Kinesin motor domain
23232624223524282425262423327DnaJ domain
14141414141914141414141514188Proteasome subunit
311227343147341Major intrinsic protein
111112111111114ATP synthase
2243122126227Glycosyl hydrolase family 1
111111121111133'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
11111111111112Profilin
111221222122120Ribosomal protein L22p/L17e
222223222222227Ribosomal protein L14p/L23e
10121411817913111091310147Ubiquitin family
556558555554568Cofilin/tropomyosin-type actin-binding protein
11111211111111414-3-3 protein
112131311115Alkaline phosphatase
111111111111113Zinc carboxypeptidase
20211925274833262923203120342Aldo/keto reductase family
117853124661112511101Myb-like DNA-binding domain
565347575454464Forkhead domain
21111212113218Glycosyl hydrolases family 32 N-terminal domain
111121222112118Ribosomal protein L16p/L10e
222225222222229Ribosomal protein S14p/S29e
333337333333343FKBP-type peptidyl-prolyl cis-trans isomerase
222213232222227Glutathione peroxidase
111121119
11Dehydrin
755444333466761Flavodoxin
112Tropomyosin
111112111111114Calreticulin family
11Common central domain of tyrosinase
456768575466473Aminotransferase class-V
222113212222224Ribonucleotide reductase, small chain
38414040436244484937364438560DEAD/DEAH box helicase
667172666810971737265656566929Helicase conserved C-terminal domain
111112111111114EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222124122222226Ribosomal protein L23
311112111112319Pyridoxal-dependent decarboxylase, C-terminal sheet domain
122112111221118Ribosomal protein L5
434458575544462Pyridoxal-dependent decarboxylase conserved domain
111121242112120Citrate synthase, C-terminal domain
557458445455465GHMP kinases N terminal domain
765546547578776Biotin carboxylase, N-terminal domain
11111111111112Tryptophan synthase alpha chain
118998116786101011114Pyridoxal-phosphate dependent enzyme
14910129221291010131314157NUDIX domain
6653411656475674pfkB family carbohydrate kinase
11154647314138Glycosyl hydrolases family 28
1326Luciferase-like monooxygenase
222223221223227Ribosomal protein L3
222224222222228Ribosomal protein L11, RNA binding domain
10997924121199121210143Histidine phosphatase superfamily (branch 1)
111111111112114Thymidylate synthase
11Lipoxygenase
444445444444453ATP synthase alpha/beta chain, C terminal domain
434435433444449Calponin homology (CH) domain
344539233453452Glutamine amidotransferases class-II
222223222222227Ribosomal protein S15
2222321317Thaumatin family
111112111111114Fructose-1-6-bisphosphatase, N-terminal domain
111111111111113Ribonucleotide reductase, all-alpha domain
222223222222227Ribosomal protein S2
222223212222226SRF-type transcription factor (DNA-binding and dimerisation domain)
11121098161071091079128GATA zinc finger
3516149517910115302736224Amino acid permease
245354584229255Prolyl oligopeptidase family
111123222222122Ribosomal protein L30p/L7e
556467576547572Histidine phosphatase superfamily (branch 2)
111111111111113Respiratory-chain NADH dehydrogenase, 30 Kd subunit
455555544445459Aconitase family (aconitate hydratase)
1111217Glycosyl hydrolase family 10
111111211111Glycosyl hydrolases family 17
222222222122225Ribosomal protein S5, N-terminal domain
222113212123224Nucleoside diphosphate kinase
1111121211113Tetraspanin family
122122222112121Ribosomal protein S10p/S20e
222233263213233Arrestin (or S-antigen), N-terminal domain
111112111122116Phosphoglucose isomerase
111112111111114Carbohydrate phosphorylase
111211111111114SecY translocase
111112111111114Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222222226Ribosomal protein L6
333335433334343Polyprenyl synthetase
222223222222227Hexokinase
333349555334353Dynamin family
111112111111114Transcription factor TFIID (or TATA-binding protein, TBP)
333435322432340Rieske [2Fe-2S] domain
22Bacterial regulatory proteins, lacI family
1111111111111Phytochrome region
426Proton-conducting membrane transporter
9876510767698997Biotin-requiring enzyme
111112111121115Phosphofructokinase
222223212222226Ribosomal protein S17
111111111111113Hydroxymethylglutaryl-coenzyme A reductase
434335333243444FGGY family of carbohydrate kinases, N-terminal domain
22Sodium:dicarboxylate symporter family
145545106454121614104Enoyl-CoA hydratase/isomerase
222223222222227Ribosomal protein S9/S16
223223222122227Transcription factor TFIIB repeat
810104556107466889Cytidine and deoxycytidylate deaminase zinc-binding region
111222111111116Molybdopterin oxidoreductase
588328941227665103Chromo (CHRromatin Organisation MOdifier) domain
211112121112218Phosphatidylinositol-specific phospholipase C, Y domain
421114131124429Phosphatidylinositol-specific phospholipase C, X domain
79106610118139997114D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
233224333222233Malic enzyme, N-terminal domain
1111222322111206-phosphogluconate dehydrogenase, C-terminal domain
555231264449555Multicopper oxidase
8713681496781078111WW domain
111222212122120Ribosomal RNA adenine dimethylase
10210210498981581001079197102991021,360WD domain, G-beta repeat
311446435343344Heavy-metal-associated domain
333335333333341Adenylate kinase
211223232222226Phosphoglucomutase/phosphomannomutase, C-terminal domain
111221222112119Ribosomal protein S8
111121112112116Ribosomal protein S11
544448565444461LIM domain
211151224263232Regulator of chromosome condensation (RCC1) repeat
222222222222226Ribosomal protein S13/S18
22NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222324222222229chorismate binding enzyme
33333333332333860s Acidic ribosomal protein
444537332443450Prenyltransferase and squalene oxidase repeat
544449343434455Protein kinase C terminal domain
211113111122219Single-strand binding protein family
111111111111113S-adenosylmethionine synthetase, N-terminal domain
1010109916101399111111138Bromodomain
17785677577111717121Acyl-CoA dehydrogenase, C-terminal domain
14141514142415151418141514200Ubiquitin carboxyl-terminal hydrolase
111112111111114Ribosomal protein L36
11212119Ribonuclease T2 family
11Gonadotropin-releasing hormone
3445596137566578HSF-type DNA-binding
222224222222228SRP54-type protein, GTPase domain
111111111111113Urease alpha-subunit, N-terminal domain
377356457324359Serine carboxypeptidase
78888128888787105Phosphatidylinositol 3- and 4-kinase
155235314224138Transketolase, thiamine diphosphate binding domain
333338333244345Inositol monophosphatase family
446446474442457Glutaredoxin
211112122131220Isocitrate lyase family
111112111111114Serine hydroxymethyltransferase
211111221111217Iron-containing alcohol dehydrogenase
222222222222226Ribosomal protein L10
544446444545558KOW motif
11112111111113Ribosomal protein L34
1111111119Ribosomal protein L33
332235343333340RF-1 domain
11111222211116Sodium:solute symporter family
111111111111113Imidazoleglycerol-phosphate dehydratase
111111111111113DNA polymerase family A
111111111111113IMP dehydrogenase / GMP reductase domain
111331131111119Glucose-6-phosphate dehydrogenase, NAD binding domain
5556512655555574Protein phosphatase 2C
222224242222230Nucleotidyl transferase
522125374246548Carbonic anhydrase
112111223212120Phosphoribulokinase / Uridine kinase family
5445565105565570Fatty acid desaturase
6666611656676784MutS domain V
111112111111114Delta-aminolevulinic acid dehydratase
332121225135232Arginase family
666669666666681MCM P-loop domain
112233323213127Squalene/phytoene synthase
7775710798789798FHA domain
213NADH-ubiquinone/plastoquinone oxidoreductase chain 6
33910141216101198253333223AMP-binding enzyme
333335373332344G-protein alpha subunit
677758566665680HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1113Cytochrome c oxidase subunit III
10771518149108710710132His Kinase A (phospho-acceptor) domain
222434223223233Armadillo/beta-catenin-like repeat
1922232110251010101622719214Tetratricopeptide repeat
433328333331443Ion transport protein
111<