PFAM Domains • Vuilleminia comedens VcCUCC2015_SSI3 v1.0
Annotations/GenomesCylto1Denbi1Phlbr1Phlcen1Punst1Schpa1Vuico1Vuicom1TotalAnnotation Description
PFAMs
8,38413,2149,1608,6467,9088,85813,33213,28382,785
1127 transmembrane receptor (rhodopsin family)
4070534741515049401ATPase family associated with various cellular activities (AAA)
5260535243546972455ABC transporter
4544544434ATP synthase alpha/beta family, nucleotide-binding domain
1124EGF-like domain
1616161514161515123Elongation factor Tu GTP binding domain
121313111112111295Helix-loop-helix DNA-binding domain
5168887121276Hsp20/alpha crystallin family
9361214992316128Hsp70 protein
8198778101077KH domain
121116SH2 domain
2836261728261819198SH3 domain
1018131111121114100Actin
277033522281720222Ankyrin repeat
112PAN domain
7976889963ADP-ribosylation factor family
1843564144275759345Eukaryotic aspartyl protease
3433333325Cyclic nucleotide-binding domain
111111118Cytochrome c
625546139775Double-stranded RNA binding motif
22272121921112EF hand
21111174Fe-4S binding domain
1211117Fibronectin type III domain
111115Globin
1727151418162932168Glutathione S-transferase, C-terminal domain
111111219Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
91211889101077Homeodomain
11Laminin EGF domain
2322223319lactate/malate dehydrogenase, NAD binding domain
61075555548Myosin head (motor domain)
1035182371301382062382451,815Cytochrome P450
1862102012042142924014142,122Protein kinase domain
1633191215161515141Pyridine nucleotide-disulphide oxidoreductase
2537252326243030220Ras family
1013121121121922120Response regulator receiver domain
85815241143425179RNase H
7375706064626867539RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
33Retroviral aspartyl protease
53439Reverse transcriptase (RNA-dependent DNA polymerase)
21212210Copper/zinc superoxide dismutase (SODC)
2222222317Iron/manganese superoxide dismutases, alpha-hairpin domain
496846203087Subtilase family
5571343330284343337Sugar (and other) transporter
121313999101186Thioredoxin
5555645540Tubulin/FtsZ family, GTPase domain
4491725von Willebrand factor type A domain
105115671766565249527Zinc finger, C2H2 type
628867857571615370Zinc finger, C3HC4 type (RING finger)
1890181227201311209Zinc knuckle
2222224420Protein-tyrosine phosphatase
80157101609897186185964short chain dehydrogenase
7181643351426360465Zinc-binding dehydrogenase
5576545542Thiolase, N-terminal domain
21110462151565Beta-ketoacyl synthase, N-terminal domain
33313311182Fe-2S iron-sulfur cluster binding domain
1121121110Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
7868788860Glutamine amidotransferase class-I
9169131010151597TCP-1/cpn60 chaperonin family
3352334427Glutamine synthetase, catalytic domain
112111119Triosephosphate isomerase
1117151510111617112E1-E2 ATPase
1823181514171414133Core histone H2A/H2B/H3/H4
11211118Copper binding proteins, plastocyanin/azurin family
121577911111183Alpha amylase, catalytic domain
6565556644Phorbol esters/diacylglycerol binding domain (C1 domain)
5845762239Bacterial transferase hexapeptide (six repeats)
3344344429tRNA synthetases class I (I, L, M and V)
131414119111818108Cyclin, N-terminal domain
258024925173131242Carboxylesterase family
4544434432DNA polymerase family B
4431333324ATP synthase subunit C
21416913192120114Peroxidase
6199684131277Beta-lactamase
4544457740C-5 cytosine-specific DNA methylase
2635271725262327206Calcineurin-like phosphoesterase
121415149122525126Cellulase (glycosyl hydrolase family 5)
5876656649tRNA synthetases class II (D, K and N)
3846383538344941319Mitochondrial carrier protein
22recA bacterial DNA recombination protein
1614142016132119133Aminotransferase class I and II
7973564445Phosphoribosyl transferase domain
1530141513131414128Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2121222214Ribosomal protein S4/S9 N-terminal domain
2222232217Ribosomal protein S12/S23
111111118Chaperonin 10 Kd subunit
1721162018121617137C2 domain
1623186211988119PH domain
1298868111476bZIP transcription factor
1327232015152220155Aldehyde dehydrogenase family
1501317122551188178706Fungal Zn(2)-Cys(6) binuclear cluster domain
2338322021202223199Cytochrome b5-like Heme/Steroid binding domain
2664413329Oxidoreductase molybdopterin binding domain
813131011109882Oxidoreductase NAD-binding domain
2534262423223835227SNF2 family N-terminal domain
2112227825Ribosomal protein S7p/S5e
2227231619262222177Ubiquitin-conjugating enzyme
5756565544Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
3342223221Hsp90 protein
3222222217Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
3111111110Dihydrofolate reductase
211127Chitin recognition protein
6721141123Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
16116432336Cupin
145Annexin
22Eukaryotic-type carbonic anhydrase
224Chalcone and stilbene synthases, N-terminal domain
36334344302-oxoacid dehydrogenases acyltransferase (catalytic domain)
3633222324Catalase
11211118Disintegrin
418651213453UDP-glucoronosyl and UDP-glucosyl transferase
61355656652Aminotransferase class-III
2221222215Ribosomal protein S19
121111119DNA gyrase B
5333333326Thiamine pyrophosphate enzyme, central domain
3633434430Lyase
1322213317Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1411111111Adenylate and Guanylate cyclase catalytic domain
121111119ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
2211323418Indole-3-glycerol phosphate synthase
231111131537Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
9171012119131495Kinesin motor domain
3231302228323030235DnaJ domain
1416151414141515117Proteasome subunit
31263446644Major intrinsic protein
111111118ATP synthase
1522142219Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
112111119Profilin
1211212212Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
2233131312181919149Ubiquitin family
5655545540Cofilin/tropomyosin-type actin-binding protein
242212111514-3-3 protein
2432314Alkaline phosphatase
111111118Zinc carboxypeptidase
39136794654558083572Aldo/keto reductase family
161814312137790Myb-like DNA-binding domain
77635591153Forkhead domain
21115Glycosyl hydrolases family 32 N-terminal domain
121212211Ribosomal protein L16p/L10e
2221122214Ribosomal protein S14p/S29e
4554334432FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
222219
611127785561Flavodoxin
111111118Calreticulin family
6391314431Common central domain of tyrosinase
10786578859Aminotransferase class-V
237415141854Ribonucleotide reductase, small chain
54120665950628280573DEAD/DEAH box helicase
93155115758796107111839Helicase conserved C-terminal domain
112Fructose-bisphosphate aldolase class-I
1221111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2322222217Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111118Ribosomal protein L5
3834468743Pyridoxal-dependent decarboxylase conserved domain
3335334428Citrate synthase, C-terminal domain
6553555539GHMP kinases N terminal domain
6786666651Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
998987111172Pyridoxal-phosphate dependent enzyme
1422151314131617124NUDIX domain
5643455537pfkB family carbohydrate kinase
91254135141476Glycosyl hydrolases family 28
2322222217Ribosomal protein L3
2222122215Ribosomal protein L11, RNA binding domain
81788109121183Histidine phosphatase superfamily (branch 1)
112111119Thymidylate synthase
11Lipoxygenase
4544444433ATP synthase alpha/beta chain, C terminal domain
4742434432Calponin homology (CH) domain
5752453334Glutamine amidotransferases class-II
2831222222Ribosomal protein S15
1256417944Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
2232212216Ribonucleotide reductase, all-alpha domain
2222122215Ribosomal protein S2
3522534428SRF-type transcription factor (DNA-binding and dimerisation domain)
14161371212121298GATA zinc finger
2430291422211212164Amino acid permease
21556467752Prolyl oligopeptidase family
2111212212Ribosomal protein L30p/L7e
917181111111513105Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4856444439Aconitase family (aconitate hydratase)
31386554549Glycosyl hydrolase family 10
3211111111Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
1422222217Nucleoside diphosphate kinase
1112243620Tetraspanin family
11Galactoside-binding lectin
1222113214Ribosomal protein S10p/S20e
2355934334Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
1113111110SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
31063446642Polyprenyl synthetase
2222223318Hexokinase
81210198111815101Dynamin family
131111210Transcription factor TFIID (or TATA-binding protein, TBP)
4542433328Rieske [2Fe-2S] domain
11114Phytochrome region
11Proton-conducting membrane transporter
812869108869Biotin-requiring enzyme
112111119Phosphofructokinase
2232222217Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
3443433327FGGY family of carbohydrate kinases, N-terminal domain
11976697762Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
2222132216Transcription factor TFIIB repeat
8885678858Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
101517121515108102Chromo (CHRromatin Organisation MOdifier) domain
3311222216Phosphatidylinositol-specific phospholipase C, Y domain
4426222224Phosphatidylinositol-specific phospholipase C, X domain
8766575549D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
3363222223Malic enzyme, N-terminal domain
12321122146-phosphogluconate dehydrogenase, C-terminal domain
8451051361818123Multicopper oxidase
911971098871WW domain
222222214Ribosomal RNA adenine dimethylase
1133131431271721721481501,338WD domain, G-beta repeat
11ATP synthase, Delta/Epsilon chain, long alpha-helix domain
3355333328Heavy-metal-associated domain
4433333326Adenylate kinase
1222212214Phosphoglucomutase/phosphomannomutase, C-terminal domain
1212122213Ribosomal protein S8
2222222216Ribosomal protein S11
6736666646LIM domain
11Matrixin
4333445531Regulator of chromosome condensation (RCC1) repeat
2222122215Ribosomal protein S13/S18
2222121113chorismate binding enzyme
423324332460s Acidic ribosomal protein
4644445536Prenyltransferase and squalene oxidase repeat
8764675548Protein kinase C terminal domain
111111118Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
1116111071010984Bromodomain
617127799976Acyl-CoA dehydrogenase, C-terminal domain
1416161514151515120Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
2261434426Ribonuclease T2 family
8698434446HSF-type DNA-binding
2322222217SRP54-type protein, GTPase domain
1111113110Urease alpha-subunit, N-terminal domain
1032282722192926193Serine carboxypeptidase
71088899968Phosphatidylinositol 3- and 4-kinase
3323212218Transketolase, thiamine diphosphate binding domain
1311118Glycosyl hydrolases family 11
1111116WHEP-TRS domain
3333221118Inositol monophosphatase family
5854543438Glutaredoxin
3442432224Isocitrate lyase family
1122111110Serine hydroxymethyltransferase
3343233324Iron-containing alcohol dehydrogenase
2222222216Ribosomal protein L10
5654554438KOW motif
111111118Ribosomal protein L34
112Ribosomal protein L33
3433224425RF-1 domain
1332325524Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
111111129DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
912981399978Protein phosphatase 2C
3333223322Nucleotidyl transferase
51844644449Carbonic anhydrase
111111118Phosphoribulokinase / Uridine kinase family
111920899111097Fatty acid desaturase
6673666646MutS domain V
111111118Delta-aminolevulinic acid dehydratase
31756535549Arginase family
6766666649MCM P-loop domain
1112113313Squalene/phytoene synthase
121414989161698FHA domain
3085534229314346359AMP-binding enzyme
1522141214151617125G-protein alpha subunit
3128181713172127172HMG (high mobility group) box
6889167141482His Kinase A (phospho-acceptor) domain
3334443327Armadillo/beta-catenin-like repeat
30182311334361415355Tetratricopeptide repeat
3472233327Ion transport protein
121111119DNA gyrase/topoisomerase IV, subunit A
1091071179972BRCA1 C Terminus (BRCT) domain
7668868857Glycosyl transferases group 1
4453435634Glycosyl transferase family 2
321118SAM domain (Sterile alpha motif)
4622332224linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
10532222Pectate lyase
2311212214ribonuclease
1111113110Urease, gamma subunit
3333233323CoA-ligase
931913963030137Phosphopantetheine attachment site
2221222215Formyl transferase
9141191110121389Metallopeptidase family M24
151915215161184Leucine Rich Repeat
5390501144451816327alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
657674111157PB1 domain
2221222215Staphylococcal nuclease homologue
1012119119121286Rab-GTPase-TBC domain
111211119Tudor domain
111111118WH1 domain
564474141256Zinc finger, ZZ type
111111219HRDC domain
111295786664CBS domain
2422222218Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
611111112Clp protease
3544545535S1 RNA binding domain
1121117HIUase/Transthyretin family
6865454442AhpC/TSA family
4654444637tRNA synthetases class I (W and Y)
141223316UvrD/REP helicase N-terminal domain
5759449952Rhodanese-like domain
2212222215Universal stress protein family
354536730363029248Acetyltransferase (GNAT) family
11211118SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
6696677653tRNA synthetase class II core domain (G, H, P, S and T)
11SpoU rRNA Methylase family
2136Phage integrase family
2432222219Tetrapyrrole (Corrin/Porphyrin) Methylases
1521111113Glycosyl transferase family, a/b domain
23263319Class II Aldolase and Adducin N-terminal domain
4544344432Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
6764555543Fes/CIP4, and EFC/F-BAR homology domain
3632462228IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
4342342224Phospholipase D Active site motif
2114117825Regulator of G protein signaling domain
5444454434GTPase-activator protein for Ras-like GTPase
8556913111269RasGEF domain
877511107762RasGEF N-terminal motif
1214131211131414103RhoGAP domain
1519131414141716122RhoGEF domain
46914454450SPRY domain
3433333325RNA polymerase Rpb1, domain 2
111111118Guanylate kinase
4543454433Gelsolin repeat
823779106676UBA/TS-N domain
2121191317191517142PHD-finger
21113311GGL domain
5544454435HECT-domain (ubiquitin-transferase)
113121110Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
51084766753Ribonuclease III domain
3224225525Region in Clathrin and VPS
3333233323RanBP1 domain
2222222317PPIC-type PPIASE domain
11Phosphotyrosine interaction domain (PTB/PID)
33331114Zn-finger in Ran binding protein and others
3333241122211414172Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111128B-box zinc finger
210104259951Poly(ADP-ribose) polymerase catalytic domain
2212125520Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
187220121137132556531,046F-box domain
3111311112Elongation factor 1 gamma, conserved domain
181326728Calpain family cysteine protease
322122214Copper fist DNA binding domain
91085767759CRAL/TRIO domain
9831412269130131441BTB/POZ domain
4728436658Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
3332233322Voltage gated chloride channel
16281414681717120Caspase domain
112242127131384GDSL-like Lipase/Acylhydrolase
121111119Poly-adenylate binding protein, unique domain
121111119POLO box duplicated region
2424303126224545247ABC transporter transmembrane region
27291048Integrase core domain
4765565543FAD binding domain
27111113Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
3211111111HAMP domain
2212222215ribosomal L5P family C-terminus
5678567852Insulinase (Peptidase family M16)
4454445535Dehydrogenase E1 component
111111118Lumazine binding domain
8966676654Elongation factor G C-terminus
5855346642HMGL-like
4444444432DnaJ central domain
5332425529Starch binding domain
2223223319Ribosomal protein L1p/L10e family
7655455542Cation transporting ATPase, C-terminus
8877668858Cation transporter/ATPase, N-terminus
11511111158dUTPase
4958444442Aconitase C-terminal domain
4333333325Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
2139462141464Acyl transferase domain
1111113110Urease beta subunit
3433222221Dihydrodipicolinate synthetase family
3141381227281516208haloacid dehalogenase-like hydrolase
2411212215Glycosyl hydrolases family 2
221819101081918124Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
1113Translation initiation factor IF-3, C-terminal domain
11114Acylphosphatase
111111118Adenylosuccinate synthetase
111111118Asparaginase, N-terminal
3432135425Peptidase S24-like
111211119Inorganic pyrophosphatase
11541059171980Glycosyl hydrolases family 16
3543426633Glycosyl hydrolases family 15
3047242013121315174NADH:flavin oxidoreductase / NADH oxidase family
1111121193-hydroxyacyl-CoA dehydrogenase, C-terminal domain
1354624429Glycosyl hydrolase family 20, catalytic domain
6655556644HhH-GPD superfamily base excision DNA repair protein
1311111110AIR carboxylase
2183431923303942300GMC oxidoreductase
2322222217Asparagine synthase
827271221202731173Fungal cellulose binding domain
7766657650Septin
111111118EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
39106373445Flavin-binding monooxygenase-like
3742337635tRNA synthetases class I (E and Q), catalytic domain
2111113313tRNA synthetases class I (R)
6695565547XPG N-terminal domain
121114814131517104Metallo-beta-lactamase superfamily
11114F5/8 type C domain
4547444436Choline/Carnitine o-acyltransferase
111111118Putative esterase
111111118Glycosyl hydrolase family 9
111111118Ferrochelatase
2222222216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111111118Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
11Ezrin/radixin/moesin family
3333