PFAM Domains • Polyporus arcularius v1.0
Annotations/GenomesDicsq1Gansp1Laesu1Neole1Phchr1Polar1PosplRSB12_1Trave1TotalAnnotation Description
PFAMs
8,0728,2657,9047,8645,9279,1437,7468,61463,535
4442434538484247349ATPase family associated with various cellular activities (AAA)
3839354050484645341ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
1414161415151414116Elongation factor Tu GTP binding domain
101212101111111188Helix-loop-helix DNA-binding domain
149886115970Hsp20/alpha crystallin family
149777119771Hsp70 protein
14877889869KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
2428272722242125198SH3 domain
11TNFR/NGFR cysteine-rich region
10101011610101077Actin
1724292322242926194Ankyrin repeat
7777677755ADP-ribosylation factor family
4449362653494553355Eukaryotic aspartyl protease
3333334325Cyclic nucleotide-binding domain
123Cytochrome b(C-terminal)/b6/petD
123Cytochrome b/b6/petB
111111118Cytochrome c
771413399567Double-stranded RNA binding motif
1920192124191518155EF hand
11122112114Fe-4S binding domain
11111117Fibronectin type III domain
1121128Globin
1818131914221925148Glutathione S-transferase, C-terminal domain
121111119Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
112Hemopexin
7121397168981Homeodomain
11114Laminin EGF domain
2222222216lactate/malate dehydrogenase, NAD binding domain
6566554441Myosin head (motor domain)
1722031541221132021971851,348Cytochrome P450
1471601621801201881501861,293Protein kinase domain
1617161816171716133Pyridine nucleotide-disulphide oxidoreductase
2225312828242629213Ras family
8889999969Response regulator receiver domain
82417448142126RNase H
6059826659716266525RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
16310Reverse transcriptase (RNA-dependent DNA polymerase)
112111119Copper/zinc superoxide dismutase (SODC)
3222352322Iron/manganese superoxide dismutases, alpha-hairpin domain
6524442532Subtilase family
3131353047343031269Sugar (and other) transporter
89108101010873Thioredoxin
5554575541Tubulin/FtsZ family, GTPase domain
4232432323von Willebrand factor type A domain
5056565652629560487Zinc finger, C2H2 type
5959705926675557452Zinc finger, C3HC4 type (RING finger)
3140261471169528321Zinc knuckle
2222222216Protein-tyrosine phosphatase
8285879275128105113767short chain dehydrogenase
6445425857685873465Zinc-binding dehydrogenase
4555645438Thiolase, N-terminal domain
4594247338Beta-ketoacyl synthase, N-terminal domain
23333333232Fe-2S iron-sulfur cluster binding domain
1131211111Enolase, C-terminal TIM barrel domain
22Cytochrome C and Quinol oxidase polypeptide I
77877891063Glutamine amidotransferase class-I
1010141091191083TCP-1/cpn60 chaperonin family
11ATP synthase A chain
3333434326Glutamine synthetase, catalytic domain
111111118Triosephosphate isomerase
1418151111151311108E1-E2 ATPase
1916151816181514131Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
8787886658Alpha amylase, catalytic domain
6666565646Phorbol esters/diacylglycerol binding domain (C1 domain)
5533434532Bacterial transferase hexapeptide (six repeats)
3333632326tRNA synthetases class I (I, L, M and V)
121312141410111096Cyclin, N-terminal domain
242513199401620166Carboxylesterase family
4444441429DNA polymerase family B
3333334325ATP synthase subunit C
141031172122795Peroxidase
55143106741Beta-lactamase
4574554438C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
2524282619282427201Calcineurin-like phosphoesterase
1211916811121392Cellulase (glycosyl hydrolase family 5)
7666676650tRNA synthetases class II (D, K and N)
3740373734373736295Mitochondrial carrier protein
1817181613211920142Aminotransferase class I and II
6678576752Phosphoribosyl transferase domain
1214201314141414115Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2222222216Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
111111118Chaperonin 10 Kd subunit
1212111616191514115C2 domain
2220171718231920156PH domain
5567864647bZIP transcription factor
1919211419231917151Aldehyde dehydrogenase family
7782728735924484573Fungal Zn(2)-Cys(6) binuclear cluster domain
2322252523242524191Cytochrome b5-like Heme/Steroid binding domain
3315444428Oxidoreductase molybdopterin binding domain
121211101312101595Oxidoreductase NAD-binding domain
2122292612202420174SNF2 family N-terminal domain
2222222317Ribosomal protein S7p/S5e
2021232220212220169Ubiquitin-conjugating enzyme
5556555541Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
2222322217Hsp90 protein
2222222317Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
11Chitin recognition protein
2733152225Cysteine-rich secretory protein family
11121118Ribosomal protein S3, C-terminal domain
7564977651Cupin
33Chalcone and stilbene synthases, N-terminal domain
33332333232-oxoacid dehydrogenases acyltransferase (catalytic domain)
3343554330Catalase
1111116Disintegrin
673811944UDP-glucoronosyl and UDP-glucosyl transferase
5557555542Aminotransferase class-III
2222222216Ribosomal protein S19
211111119DNA gyrase B
4433353429Thiamine pyrophosphate enzyme, central domain
3334333325Lyase
1112211110Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111118Adenylate and Guanylate cyclase catalytic domain
11111218ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
2212122113Indole-3-glycerol phosphate synthase
3121111111Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
91010101088974Kinesin motor domain
2832353222323231244DnaJ domain
1414151414141314112Proteasome subunit
5637852541Major intrinsic protein
111111118ATP synthase
4322222219Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
1121212111Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
1719151612191917134Ubiquitin family
5555455438Cofilin/tropomyosin-type actin-binding protein
122122321514-3-3 protein
2212221315Alkaline phosphatase
111111118Zinc carboxypeptidase
6148485253605967448Aldo/keto reductase family
1312131413141312104Myb-like DNA-binding domain
5555555641Forkhead domain
21137Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
1222122214Ribosomal protein S14p/S29e
33103333331FKBP-type peptidyl-prolyl cis-trans isomerase
111111129Glutathione peroxidase
1122211212
675713106660Flavodoxin
1113Tropomyosin
111111118Calreticulin family
321331518Common central domain of tyrosinase
771763961065Aminotransferase class-V
22224112328Ribonucleotide reductase, small chain
5246524644514846385DEAD/DEAH box helicase
8975838259848276630Helicase conserved C-terminal domain
22Fructose-bisphosphate aldolase class-I
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2212222215Ribosomal protein L23
111111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111118Ribosomal protein L5
4354334430Pyridoxal-dependent decarboxylase conserved domain
3543334328Citrate synthase, C-terminal domain
5555455539GHMP kinases N terminal domain
6786676753Biotin carboxylase, N-terminal domain
1111111310Tryptophan synthase alpha chain
9911910991177Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
1515161711151415118NUDIX domain
3334233324pfkB family carbohydrate kinase
7107103118965Glycosyl hydrolases family 28
2222222216Ribosomal protein L3
2222222216Ribosomal protein L11, RNA binding domain
7886699760Histidine phosphatase superfamily (branch 1)
1111131110Thymidylate synthase
112Lipoxygenase
4444444432ATP synthase alpha/beta chain, C terminal domain
4455444434Calponin homology (CH) domain
5555454538Glutamine amidotransferases class-II
2223122216Ribosomal protein S15
41028352842Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
11111101218Ribonucleotide reductase, all-alpha domain
323222216Ribosomal protein S2
2323221217SRF-type transcription factor (DNA-binding and dimerisation domain)
101110107119977GATA zinc finger
2422162516262524178Amino acid permease
4465255435Prolyl oligopeptidase family
2131121112Ribosomal protein L30p/L7e
14141110813121597Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4454454535Aconitase family (aconitate hydratase)
5932663640Glycosyl hydrolase family 10
111111118Glycosyl hydrolases family 17
2232222217Ribosomal protein S5, N-terminal domain
2222222216Nucleoside diphosphate kinase
2211219Tetraspanin family
2232222217Ribosomal protein S10p/S20e
785474742Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
111111118SecY translocase
112111119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
8455345337Polyprenyl synthetase
2232222217Hexokinase
61188586860Dynamin family
121111119Transcription factor TFIID (or TATA-binding protein, TBP)
3334344428Rieske [2Fe-2S] domain
1113Phytochrome region
22Proton-conducting membrane transporter
8888898966Biotin-requiring enzyme
111111118Phosphofructokinase
3222222217Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
3433343427FGGY family of carbohydrate kinases, N-terminal domain
88778109865Enoyl-CoA hydratase/isomerase
2222122215Ribosomal protein S9/S16
4322232220Transcription factor TFIIB repeat
68108598761Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
1119911611759142Chromo (CHRromatin Organisation MOdifier) domain
111211119Phosphatidylinositol-specific phospholipase C, Y domain
1222121112Phosphatidylinositol-specific phospholipase C, X domain
7676678754D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
3332333323Malic enzyme, N-terminal domain
21122322156-phosphogluconate dehydrogenase, C-terminal domain
13177551141072Multicopper oxidase
7810116107766WW domain
2222132216Ribosomal RNA adenine dimethylase
1921631351211161641171291,137WD domain, G-beta repeat
4763444537Heavy-metal-associated domain
3333333324Adenylate kinase
1221222113Phosphoglucomutase/phosphomannomutase, C-terminal domain
111121119Ribosomal protein S8
1122111110Ribosomal protein S11
6666564544LIM domain
11Matrixin
2243343223Regulator of chromosome condensation (RCC1) repeat
1222222114Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
3222222217chorismate binding enzyme
333332232260s Acidic ribosomal protein
4454454434Prenyltransferase and squalene oxidase repeat
6678467650Protein kinase C terminal domain
11111117Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
81014101011111084Bromodomain
10881091081073Acyl-CoA dehydrogenase, C-terminal domain
1415141414141414113Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
2223222217Ribonuclease T2 family
5565452638HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
211111119Urease alpha-subunit, N-terminal domain
1818101721211524144Serine carboxypeptidase
8888798965Phosphatidylinositol 3- and 4-kinase
2222222216Transketolase, thiamine diphosphate binding domain
11Glycosyl hydrolases family 11
11WHEP-TRS domain
3632222222Inositol monophosphatase family
4444344431Glutaredoxin
4354243429Isocitrate lyase family
111112119Serine hydroxymethyltransferase
3446333329Iron-containing alcohol dehydrogenase
2222322217Ribosomal protein L10
4465645539KOW motif
1111116Ribosomal protein L34
3223222319RF-1 domain
2145324223Sodium:solute symporter family
112111119Imidazoleglycerol-phosphate dehydratase
112111119DNA polymerase family A
211111119IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
77665116856Protein phosphatase 2C
3223132218Nucleotidyl transferase
6322452529Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
9121212610121689Fatty acid desaturase
5666668649MutS domain V
111211119Delta-aminolevulinic acid dehydratase
5357355437Arginase family
6666666648MCM P-loop domain
111111118Squalene/phytoene synthase
121599813101389FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
3430323730373533268AMP-binding enzyme
151614149181514115G-protein alpha subunit
1619131415202628151HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
5556665543His Kinase A (phospho-acceptor) domain
3344234326Armadillo/beta-catenin-like repeat
2628282823283426221Tetratricopeptide repeat
2324134322Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
81191061291176BRCA1 C Terminus (BRCT) domain
7677466649Glycosyl transferases group 1
3544664436Glycosyl transferase family 2
1121319SAM domain (Sterile alpha motif)
2334233323linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
31111119ribonuclease
211111119Urease, gamma subunit
3333333324CoA-ligase
978136106867Phosphopantetheine attachment site
2222122215Formyl transferase
1010129911111082Metallopeptidase family M24
1615151614161514121Leucine Rich Repeat
4350442723513263333alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
5576365542PB1 domain
2222242218Staphylococcal nuclease homologue
9810971091072Rab-GTPase-TBC domain
111111118Tudor domain
2213222216WH1 domain
4636463638Zinc finger, ZZ type
11111117HRDC domain
10998898970CBS domain
2222222216Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
111111118Clp protease
3344233325S1 RNA binding domain
11111117HIUase/Transthyretin family
4444644535AhpC/TSA family
4454444332tRNA synthetases class I (W and Y)
1231121112UvrD/REP helicase N-terminal domain
4434644534Rhodanese-like domain
2222122215Universal stress protein family
3034263024433038255Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2232222217AIR synthase related protein, N-terminal domain
6666666648tRNA synthetase class II core domain (G, H, P, S and T)
11316Phage integrase family
2222222317Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
211138Class II Aldolase and Adducin N-terminal domain
3333233323Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
4555253635Fes/CIP4, and EFC/F-BAR homology domain
4335433429IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
3354434329Phospholipase D Active site motif
111111219Regulator of G protein signaling domain
4457445437GTPase-activator protein for Ras-like GTPase
7667656548RasGEF domain
7779167650RasGEF N-terminal motif
1213141211131213100RhoGAP domain
131315138131312100RhoGEF domain
2444444430SPRY domain
3433333325RNA polymerase Rpb1, domain 2
111111118Guanylate kinase
4334443429Gelsolin repeat
7868787960UBA/TS-N domain
1713202011201619136PHD-finger
11211129GGL domain
4546444435HECT-domain (ubiquitin-transferase)
223141215Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
7596277548Ribonuclease III domain
2222222216Region in Clathrin and VPS
2434343326RanBP1 domain
3222232218PPIC-type PPIASE domain
5333142425Zn-finger in Ran binding protein and others
2223272418251422175Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111117B-box zinc finger
2372137328Poly(ADP-ribose) polymerase catalytic domain
2242132218Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
1001151141021002401141761,061F-box domain
111111118Elongation factor 1 gamma, conserved domain
11511110Calpain family cysteine protease
1222323116Copper fist DNA binding domain
6586669753CRAL/TRIO domain
302632227463647246BTB/POZ domain
861492333Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
3333233323Voltage gated chloride channel
101029921010787Caspase domain
101448695965GDSL-like Lipase/Acylhydrolase
111111118Poly-adenylate binding protein, unique domain
111111118POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
1816132020242025156ABC transporter transmembrane region
2417Integrase core domain
5644855542FAD binding domain
2213311316Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111111118HAMP domain
2222122215ribosomal L5P family C-terminus
6665666647Insulinase (Peptidase family M16)
4464444535Dehydrogenase E1 component
111111118Lumazine binding domain
6686766651Elongation factor G C-terminus
4544477439HMGL-like
4444544332DnaJ central domain
2312221417Starch binding domain
2222221215Ribosomal protein L1p/L10e family
7864475546Cation transporting ATPase, C-terminus
71086487656Cation transporter/ATPase, N-terminus
11916717188dUTPase
4474454537Aconitase C-terminal domain
3333333324Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
45114168443Acyl transferase domain
211111119Urease beta subunit
2342432323Dihydrodipicolinate synthetase family
3439322825373426255haloacid dehalogenase-like hydrolase
2212122214Glycosyl hydrolases family 2
142079101491194Glycosyl hydrolases family 18
111111129Proliferating cell nuclear antigen, N-terminal domain
11111117Acylphosphatase
1131111110Adenylosuccinate synthetase
111111118Asparaginase, N-terminal
2233222218Peptidase S24-like
111111118Inorganic pyrophosphatase
6865387649Glycosyl hydrolases family 16
2322222419Glycosyl hydrolases family 15
13109215232015116NADH:flavin oxidoreductase / NADH oxidase family
1111111183-hydroxyacyl-CoA dehydrogenase, C-terminal domain
4534353633Glycosyl hydrolase family 20, catalytic domain
5576456947HhH-GPD superfamily base excision DNA repair protein
112111119AIR carboxylase
3735292731332722241GMC oxidoreductase
2222122215Asparagine synthase
1718282122106Fungal cellulose binding domain
7666566648Septin
111111118EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
455152325Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
2333233322tRNA synthetases class I (E and Q), catalytic domain
1131121111tRNA synthetases class I (R)
5537675543XPG N-terminal domain
12169137181115101Metallo-beta-lactamase superfamily
11111117F5/8 type C domain
4464544435Choline/Carnitine o-acyltransferase
111111118Putative esterase
111115Glycosyl hydrolase family 9
111111118Ferrochelatase
2222222216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
112111119Arginosuccinate synthase
111111118Electron transfer flavoprotein FAD-binding domain
3333333324RNB domain
2622452326Dioxygenase
4534243530CNH domain
2222122215Diacylglycerol kinase catalytic domain
11111612513131394Dual specificity phosphatase, catalytic domain
1111111