PFAM Domains • Mycorrhizal Fungi

Within the framework of the JGI Mycorrhizal Genomics Initiative (MGI) project, we are sequencing a phylogenetically and ecologically diverse suite of mycorrhizal fungi (Basidiomycota and Ascomycota), which include the major clades of symbiotic species associating with trees and woody shrubs. Analyses of these genomes will provide new insights into the diversity of mechanisms for the mycorrhizal symbioses, including ericoid-, orchidoid- and ectomycorrhizal associations. A large collaborative effort led by PI of these project, Francis Martin (INRA), aims for master publication(s) of the MGI data analyses. Researchers who wish to publish analyses using data from unpublished MGI genomes are respectfully required to contact the PIs and JGI to avoid potential conflicts on data use and coordinate other publications with the MGI master paper(s).

Annotations/GenomesAcema1Amamu1Amarub1Boled5Boledp1Cananz1Cenge3CerAGIChove1ClaPMI390Coraus1Corcam1Corgl3Gaumor1_1Geocar1Gigro1Gloin1Gyrli1Hebcy2Hydru2Hyssto1Kalpfe1Kurarg1Lacaka1Lacam2Lacbi2Lacdel1Lachat1Lachen1Lacpsa1Lacpse1Lacqui1Lacsan1Lacsub1Lacviv1Lacvol1MelPMI1271_1Melbi2Melbro1Melva1Morco1Muloch1Oidma1Paxam1Paxin1Paxru2Pilcr1Pisalb1Piscro1Pismar1Pismi1Pismi_AB1_1Pisthe1Pisthe227_1Pisti1Rhice1_1Rhidi1Rhier1Rhiir2_1RhiirA1_1RhiirA4RhiirA5RhiirB3RhiirC2Rhisa1Rhitru1Rhives1Rhivi1Rhivul1Rusbre1Ruscom1Rusdis1Rusear1Ruseme1Rusoch1Rusrug1Russem1Rusvin1Sclci1Sebve1Sebvebe1Serend1Sphbr2Suiame1Suiamp1Suibov1Suibr2Suicli1Suicot1Suidec1Suidis1Suifus1Suigr1Suihi1Suilak1Suilu4Suiocc1Suipal1Suipic1Suipla1Suisu1Suisub1Suisubl1Suitom1Suivar1Terbo2Tercla1Thega1Theter1Tirniv1Trihyb1Trima3Tubae1Tubbor1Tubma1Tubme1v2Tulca1Tulcal1Wilmi1Xerba1TotalAnnotation Description
PFAMs
11,8837,85511,25111,13711,0419,8778,7929,7017,7818,47810,25311,4178,17910,6798,83918,49712,1047,2707,6756,86210,3358,91110,0039,7277,7938,65611,57210,8699,7719,65511,68710,59010,8638,5479,2739,11114,29811,47110,25013,3847,2228,31312,2697,6698,9487,0068,93010,18410,40212,0657,7938,86410,39410,1218,03413,29314,19910,11515,93111,38410,45010,42910,48710,4088,9159,2289,7038,3159,2018,6937,9658,3029,0779,5619,0458,5338,5288,3088,0998,3877,9838,6098,94310,06710,5309,5199,03710,43711,7958,32310,17910,8868,0458,31211,2409,96610,09710,15911,2789,90110,5439,78611,73710,29310,4056,3428,0267,1579,3368,0399,6687,4998,6618,6976,4898,55110,44811,8877,4218,1471,165,545
1111811115121443341111657 transmembrane receptor (rhodopsin family)
22112211127 transmembrane receptor (Secretin family)
117 transmembrane sweet-taste receptor of 3 GCPR
8243434141465947594240444346455751414543504641413939465141475940454338428875446838385941454254424557413641404153465649534852514849394341403741395139443840423852423848434338454453424847444747564643424744415748494142425041524445515143453955415,554ATPase family associated with various cellular activities (AAA)
5135433637383572326957485145326442354454633343504349614949556841633243325564807133307537473653373960363437414447445541624240454049495641453631403641343334283737383434555744485462495758475073444853525048475955532827343729324640383332404429385,442ABC transporter
4444444444444345454444455445545101044644544444445617410161814444445455510555544447354469444454565655655576656561466444644544445444695ATP synthase alpha/beta family, nucleotide-binding domain
11121111110EGF-like domain
1417141517181314151716151614152214141817161614161716171617151717172614131514171415141414141315191720151517151420161416181416171514141513151614171421161715181416161415161715191817151817151515152215151822161918181415151614151516161515151414131,907Elongation factor Tu GTP binding domain
201413131581111816111111139211111129119131214201512121311131211121222161020991511101110201214121112151412121913121212121212121012111111111011111111912101111711111212121416121211121311111214111212121112991114108128910910119101,438Helix-loop-helix DNA-binding domain
714151915626641017106217115729310581078614447455647563566961415111314151411141551514111413119777946545845484354889127178986810111281479888833713335363369413967Hsp20/alpha crystallin family
1294181015832101210139151026378121515151091315272230163114128771582577797972419162536182220133853863343537373781104920168871014721101315121111111421121815201111181120132928171518148261216720171217249131981547229232,162Hsp70 protein
991188881022771412991126878988698786787797891091211688889898108889202812323228252929871210878877677781088988887888888881089869887988789799118881181,190KH domain
2114Methyl-accepting chemotaxis protein (MCP) signalling domain
1113Ribulose bisphosphate carboxylase large chain, catalytic domain
111111111111111111111111111111111111111111143SH2 domain
2526151617132228202520193215131828252823151316153240182014171718171218131829152620122327262733321914381419182923202721313129303325171828171514131417141614142632281923162013262019261719252721161817161517161717182111261110122711111813402323262,470SH3 domain
1011121011101012101512131317101110131110121015111615111111121213141611381110231010111010111011151411131312111210101010101010101012101112111111131210139101210109111112141113121513111311141613171217111211111614101211121010128131310101010121,437Actin
197457064129518491461141468115631363114352566027959938292256384894329902557207270191484998466535224645314615583029293030203424241172510413238373721345664533232142554282623324344415128322384010960603415663316307515,568Ankyrin repeat
561266541121141PAN domain
7781616881487818898988881079999710107898877778786789971071081177799799999981067877771077137712111671178910138109881098981298137877877888979710771,036ADP-ribosylation factor family
26314149523112313423230233361089175153035756402524504438485547372536362424344233132273422431720251615181724772781211910946454843352118221930353425472016197852655041605621159503644643537543444056455749514513135515443440353384,235Eukaryotic aspartyl protease
433434434322334443333433333433434433443443433333433443444445444433333333533334333343334343333333333333343444344344442343406Cyclic nucleotide-binding domain
1111111111111114Cytochrome b(C-terminal)/b6/petD
12211121112Cytochrome b/b6/petB
113111111111111111111111211111111111111111111111111111111111111111123111111111111111111111111111111112111211116Cytochrome c
21424861125357587387108177168141115599812913781352352988134777788678389108971591417108581281188871417135121313812171311910999813131111131089117121484324716571,004Double-stranded RNA binding motif
2222122121241421172312917191714231918333334433221712116218181715222431822220332033032313130181218223312442318172224132171116111716111221211116319231152418326117181,063EF hand
111111111111211111111111111111111211111111111211514Fe-4S binding domain
211122111111111111232312111121211212111111112111211113111111121112187Fibronectin type III domain
1113Globin
1919151110912201292313159102123125713421591357666654441421173195331214101618171013141620161430212933373330282012161913739768555131498523211530121421172023202521231824191819231716626936185475151410141,700Glutathione S-transferase, C-terminal domain
1211111211221124212181111252112211112121321111111111112122123222221123111111111211131112131111121111133212111112122222421197Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
19241118Hemopexin
9891712813115881181446911979471011109109111011129101068911487111091210101110119121077869910991512101312881010121888149101014310101113121117121714111211141414111510151213556633154443975111,164Homeodomain
11Kazal-type serine protease inhibitor domain
11111111111111115Laminin EGF domain
4243223222322223332242222223222223222442322322233232223333333433322222222232222422222122242222226532222222222322222222222308lactate/malate dehydrogenase, NAD binding domain
557443084566755105656555576678675555556542065556669241072577811555555555622665754454465215546666678767667610779669765555545554574413855Myosin head (motor domain)
134Neuraminidase
18212512814414762951804183181174171213703461919889451703395175878620421016318521317720511316112317316827422135124170133196112130115155228114131164169117114163113202201206209197190166155211220138147112111881491691661131931001311895847176236133116182200180232234112155224119112194195131236153267206197171883792141103316327321291405015117,327Cytochrome P450
1851624132132102952133951222922072111653161077941,0091592061812381222331701932172372222192022882032221821621752161802571591561761281942741582692211892612001632041991745897631589316035195395825162952571702292291981671832135701831621801702542281891461942162431872442402691982502771942212352142452322342382312003202432611011434053141501921501221791001111,07779114017531,677Protein kinase domain
29201599111418102110111510101281317131089