PFAM Domains • Erythrobasidium hasegawianum ATCC 9536 v1.0
Annotations/GenomesAtrsp2Eryha1Hetpy1Mixos1Pucgr1Rhomi1Rhosp1TotalAnnotation Description
PFAMs
9,0846,6725,5785,5626,7846,1745,72845,582
1127 transmembrane receptor (rhodopsin family)
50383330353633255ATPase family associated with various cellular activities (AAA)
91372829253430274ABC transporter
544454430ATP synthase alpha/beta family, nucleotide-binding domain
11125EGF-like domain
19131413171313102Elongation factor Tu GTP binding domain
12998710863Helix-loop-helix DNA-binding domain
8334220Hsp20/alpha crystallin family
1677798761Hsp70 protein
1188888758KH domain
1111116SH2 domain
27192520282223164SH3 domain
14991099969Actin
17201717162017124Ankyrin repeat
55PAN domain
1097688755ADP-ribosylation factor family
32141338161312138Eukaryotic aspartyl protease
333333321Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
42111110Double-stranded RNA binding motif
22191615211813124EF hand
111121184Fe-4S binding domain
1111127Fibronectin type III domain
11Globin
221349810672Glutathione S-transferase, C-terminal domain
12111129Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
688785648Homeodomain
11Laminin EGF domain
322222215lactate/malate dehydrogenase, NAD binding domain
555555535Myosin head (motor domain)
6326101416247160Cytochrome P450
2021051429511210598859Protein kinase domain
221511108131291Pyridine nucleotide-disulphide oxidoreductase
33222524252521175Ras family
111714159161698Response regulator receiver domain
522219535RNase H
92626457856052472RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
2727Retroviral aspartyl protease
1111Reverse transcriptase (RNA-dependent DNA polymerase)
21215121Copper/zinc superoxide dismutase (SODC)
11111117Iron/manganese superoxide dismutases, alpha-hairpin domain
17355143350Subtilase family
53362213162134195Sugar (and other) transporter
16111188111176Thioredoxin
1245353537Tubulin/FtsZ family, GTPase domain
52411215von Willebrand factor type A domain
53443531523233280Zinc finger, C2H2 type
464531351104035342Zinc finger, C3HC4 type (RING finger)
2014168142148222Zinc knuckle
325222218Protein-tyrosine phosphatase
112842950296944417short chain dehydrogenase
66401919113726218Zinc-binding dehydrogenase
754446636Thiolase, N-terminal domain
11112118Beta-ketoacyl synthase, N-terminal domain
2343244222Fe-2S iron-sulfur cluster binding domain
11111128Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
888877753Glutamine amidotransferase class-I
131010111210975TCP-1/cpn60 chaperonin family
112ATP synthase A chain
532333120Glutamine synthetase, catalytic domain
21111118Triosephosphate isomerase
171212121014986E1-E2 ATPase
21202911241817140Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
683247434Alpha amylase, catalytic domain
433455125Phorbol esters/diacylglycerol binding domain (C1 domain)
575586642Bacterial transferase hexapeptide (six repeats)
833353328tRNA synthetases class I (I, L, M and V)
21109910101180Cyclin, N-terminal domain
2169865964Carboxylesterase family
544464431DNA polymerase family B
833433327ATP synthase subunit C
112Legume lectin domain
222222214Peroxidase
6723422Beta-lactamase
32229C-5 cytosine-specific DNA methylase
22NADH dehydrogenase
31201819172020145Calcineurin-like phosphoesterase
8111396240Cellulase (glycosyl hydrolase family 5)
554445431tRNA synthetases class II (D, K and N)
47413334343736262Mitochondrial carrier protein
28141513151517117Aminotransferase class I and II
1076787651Phosphoribosyl transferase domain
1511131114111186Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222232215Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
21111118Chaperonin 10 Kd subunit
15914137101179C2 domain
20132020181818127PH domain
2759757868bZIP transcription factor
2718128121211100Aldehyde dehydrogenase family
141635429245745413Fungal Zn(2)-Cys(6) binuclear cluster domain
30231721192119150Cytochrome b5-like Heme/Steroid binding domain
3422112Oxidoreductase molybdopterin binding domain
897767650Oxidoreductase NAD-binding domain
31192016581922185SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
24181719171619130Ubiquitin-conjugating enzyme
1155525740Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
322312316Hsp90 protein
322222215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
11Chitin recognition protein
424373326Cysteine-rich secretory protein family
21112119Ribosomal protein S3, C-terminal domain
1616Cupin
21115Annexin
2226Eukaryotic-type carbonic anhydrase
3233323192-oxoacid dehydrogenases acyltransferase (catalytic domain)
231263219Catalase
11112118Disintegrin
11112UDP-glucoronosyl and UDP-glucosyl transferase
6765118548Aminotransferase class-III
42222214Ribosomal protein S19
11112118DNA gyrase B
551214422Thiamine pyrophosphate enzyme, central domain
233333320Lyase
122212212Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
11211118Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
21111118Orotidine 5'-phosphate decarboxylase / HUMPS family
21111129Indole-3-glycerol phosphate synthase
11112118Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
12897138865Kinesin motor domain
39292425323127207DnaJ domain
17141414151413101Proteasome subunit
51038109853Major intrinsic protein
11111117ATP synthase
31116Glycosyl hydrolase family 1
21111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
21111118Ribosomal protein L22p/L17e
322222215Ribosomal protein L14p/L23e
20161099141492Ubiquitin family
444534428Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
341333320Alkaline phosphatase
3112119Zinc carboxypeptidase
77211010122114165Aldo/keto reductase family
1210147781169Myb-like DNA-binding domain
544324224Forkhead domain
2112118Glycosyl hydrolases family 32 N-terminal domain
21111118Ribosomal protein L16p/L10e
322122214Ribosomal protein S14p/S29e
553434327FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
12111118
1146354437Flavodoxin
11Tropomyosin
21111118Calreticulin family
11Common central domain of tyrosinase
955565540Aminotransferase class-V
11121129Ribonucleotide reductase, small chain
49393939693841314DEAD/DEAH box helicase
897270631586673591Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
11113119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
122112211Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
21211119Ribosomal protein L5
763525533Pyridoxal-dependent decarboxylase conserved domain
222222113Citrate synthase, C-terminal domain
655565537GHMP kinases N terminal domain
745554636Biotin carboxylase, N-terminal domain
21112119Tryptophan synthase alpha chain
1586788658Pyridoxal-phosphate dependent enzyme
1813101210141188NUDIX domain
653454431pfkB family carbohydrate kinase
3115Glycosyl hydrolases family 28
322222215Ribosomal protein L3
221212111Ribosomal protein L11, RNA binding domain
132791013111194Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
55Lipoxygenase
544454531ATP synthase alpha/beta chain, C terminal domain
744354431Calponin homology (CH) domain
954575540Glutamine amidotransferases class-II
223122214Ribosomal protein S15
322132417'Cold-shock' DNA-binding domain
5337321Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
322232216Ribosomal protein S2
434323322SRF-type transcription factor (DNA-binding and dimerisation domain)
128108761061GATA zinc finger
28142112201117123Amino acid permease
635645534Prolyl oligopeptidase family
311211110Ribosomal protein L30p/L7e
1064855745Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
554444430Aconitase family (aconitate hydratase)
358Glycosyl hydrolase family 10
1211117Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
122212212Nucleoside diphosphate kinase
11114Tetraspanin family
21111118Ribosomal protein S10p/S20e
354215323Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
111115Carbohydrate phosphorylase
11111117SecY translocase
21111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222232215Ribosomal protein L6
333343322Polyprenyl synthetase
322242217Hexokinase
845363332Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
362434426Rieske [2Fe-2S] domain
112Phytochrome region
44Proton-conducting membrane transporter
857775847Biotin-requiring enzyme
11111117Phosphofructokinase
422222216Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
442232219FGGY family of carbohydrate kinases, N-terminal domain
1113Sodium:dicarboxylate symporter family
1167887754Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
332233218Transcription factor TFIIB repeat
876556542Cytidine and deoxycytidylate deaminase zinc-binding region
12111129Molybdopterin oxidoreductase
655185434Chromo (CHRromatin Organisation MOdifier) domain
31111119Phosphatidylinositol-specific phospholipase C, Y domain
312121111Phosphatidylinositol-specific phospholipase C, X domain
9126417645D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
32221212Malic enzyme, N-terminal domain
121112196-phosphogluconate dehydrogenase, C-terminal domain
4231122428Multicopper oxidase
586768646WW domain
121112210Ribosomal RNA adenine dimethylase
13410597101106101104748WD domain, G-beta repeat
444326225Heavy-metal-associated domain
443343324Adenylate kinase
221222213Phosphoglucomutase/phosphomannomutase, C-terminal domain
511222215Ribosomal protein S8
11112129Ribosomal protein S11
955466439LIM domain
212411213Regulator of chromosome condensation (RCC1) repeat
222222315Ribosomal protein S13/S18
22NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
212241214chorismate binding enzyme
53332332260s Acidic ribosomal protein
547494437Prenyltransferase and squalene oxidase repeat
1057585545Protein kinase C terminal domain
1121117Single-strand binding protein family
11112118S-adenosylmethionine synthetase, N-terminal domain
1289988963Bromodomain
1458101081166Acyl-CoA dehydrogenase, C-terminal domain
19151512141314102Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
51111211Ribonuclease T2 family
447765841HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11112118Urease alpha-subunit, N-terminal domain
19757127461Serine carboxypeptidase
1197889759Phosphatidylinositol 3- and 4-kinase
221211211Transketolase, thiamine diphosphate binding domain
11226WHEP-TRS domain
332223318Inositol monophosphatase family
644545533Glutaredoxin
232223216Isocitrate lyase family
311121110Serine hydroxymethyltransferase
241213215Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
466335431KOW motif
111115Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
1113Ribosomal protein L33
322113315RF-1 domain
1124Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
21111118IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
866565642Protein phosphatase 2C
122232214Nucleotidyl transferase
311321213Carbonic anhydrase
111115Phosphoribulokinase / Uridine kinase family
655585438Fatty acid desaturase
686656643MutS domain V
11111117Delta-aminolevulinic acid dehydratase
512211214Arginase family
866676645MCM P-loop domain
221222213Squalene/phytoene synthase
1458546850FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
35221219121714131AMP-binding enzyme
11811346447G-protein alpha subunit
169138118772HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
81411114131374His Kinase A (phospho-acceptor) domain
833324225Armadillo/beta-catenin-like repeat
32242320271619161Tetratricopeptide repeat
541223219Ion transport protein
11112118DNA gyrase/topoisomerase IV, subunit A
888116101263BRCA1 C Terminus (BRCT) domain
785665946Glycosyl transferases group 1
253334525Glycosyl transferase family 2
11125SAM domain (Sterile alpha motif)
31116linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
22Pectate lyase
11112118Urease, gamma subunit
533343324CoA-ligase
542344325Phosphopantetheine attachment site
722222219Formyl transferase
1679677860Metallopeptidase family M24
13161611151317101Leucine Rich Repeat
46291521202113165alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
933344430PB1 domain
223222215Staphylococcal nuclease homologue
1211910610866Rab-GTPase-TBC domain
11111117Tudor domain
21112119WH1 domain
423243321Zinc finger, ZZ type
111216HRDC domain
987778854CBS domain
322222215Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
1113Clp protease
534453327S1 RNA binding domain
11111117HIUase/Transthyretin family
453424224AhpC/TSA family
544444429tRNA synthetases class I (W and Y)
132111110UvrD/REP helicase N-terminal domain
445645331Rhodanese-like domain
342215219Universal stress protein family
59371522113121196Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
322222215AIR synthase related protein, N-terminal domain
676787647tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
222212213Tetrapyrrole (Corrin/Porphyrin) Methylases
12111219Glycosyl transferase family, a/b domain
253122318Class II Aldolase and Adducin N-terminal domain
22Adenoviral fibre protein (repeat/shaft region)
321332115Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
543573330Fes/CIP4, and EFC/F-BAR homology domain
426222422IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
543344427Phospholipase D Active site motif
11111117Regulator of G protein signaling domain
544354328GTPase-activator protein for Ras-like GTPase
544444429RasGEF domain
544444429RasGEF N-terminal motif
1611121013121387RhoGAP domain
17981114121081RhoGEF domain
533333222SPRY domain
433333322RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
744333327Gelsolin repeat
1187989759UBA/TS-N domain
19181816121617116PHD-finger
111115GGL domain
646474738HECT-domain (ubiquitin-transferase)
22214314Helix-hairpin-helix motif
1113BRCA2 repeat
11111117MSP (Major sperm protein) domain
7932661144Ribonuclease III domain
422212215Region in Clathrin and VPS
243233219RanBP1 domain
212221212PPIC-type PPIASE domain
11114Zn-finger in Ran binding protein and others
2218141291317105Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11B-box zinc finger
41218Poly(ADP-ribose) polymerase catalytic domain
12111219Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
149613425264841384F-box domain
11111117Elongation factor 1 gamma, conserved domain
11114Calpain family cysteine protease
413114216Copper fist DNA binding domain
998999457CRAL/TRIO domain
1756324340BTB/POZ domain
112Ricin-type beta-trefoil lectin domain
11121118Inhibitor of Apoptosis domain
332243320Voltage gated chloride channel
412111111Caspase domain
654238533GDSL-like Lipase/Acylhydrolase
21111118Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
5315913111512128ABC transporter transmembrane region
1313Integrase core domain
343333322FAD binding domain
12115Condensation domain
22111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
311121110HAMP domain
322212214ribosomal L5P family C-terminus
955547742Insulinase (Peptidase family M16)
523332422Dehydrogenase E1 component
11111117Lumazine binding domain
755565538Elongation factor G C-terminus
544454430HMGL-like
444334426DnaJ central domain
11Sulfotransferase domain
617Starch binding domain
222212213Ribosomal protein L1p/L10e family
565546435Cation transporting ATPase, C-terminus
986887551Cation transporter/ATPase, N-terminus
3111118dUTPase
554444430Aconitase C-terminal domain
433343323Amino acid kinase family
21111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
221222213Acyl transferase domain
11112118Urease beta subunit
2312210Dihydrodipicolinate synthetase family
36262526232822186haloacid dehalogenase-like hydrolase
5151113Glycosyl hydrolases family 2
10546175451Glycosyl hydrolases family 18
31111119Proliferating cell nuclear antigen, N-terminal domain
11114Acylphosphatase
11111117Adenylosuccinate synthetase
11111128Asparaginase, N-terminal
222332115Peptidase S24-like
11111117Inorganic pyrophosphatase
183214221Glycosyl hydrolases family 16
322132215Glycosyl hydrolases family 15
861536534NADH:flavin oxidoreductase / NADH oxidase family
2422222163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
31323214Glycosyl hydrolase family 20, catalytic domain
562645432HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
21312491252GMC oxidoreductase
332223217Asparagine synthase
4222212Fungal cellulose binding domain
8454135443Septin
11211118EF-1 guanine nucleotide exchange domain
11112129Homoserine dehydrogenase
8123115Flavin-binding monooxygenase-like
433333322tRNA synthetases class I (E and Q), catalytic domain
21211119tRNA synthetases class I (R)
1055545539XPG N-terminal domain
141366591063Metallo-beta-lactamase superfamily
112F5/8 type C domain
344454428Choline/Carnitine o-acyltransferase
1111116Putative esterase
2114Glycosyl hydrolase family 9
11111117Ferrochelatase
32222213Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11112118Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
54134219Dioxygenase
222343218CNH domain
222222214Diacylglycerol kinase catalytic domain
1176767549Dual specificity phosphatase, catalytic domain
1113MyTH4 domain
923344328P21-Rho-binding domain
1714111114151395PX domain
314522320Ras association (RalGDS/AF-6) domain
544434428UBX domain
555545433VHS domain
11111117Phosphoinositide 3-kinase C2
322262219DAHP synthetase I family
674466639Carbon-nitrogen hydrolase
321212213N-acetyltransferase
11111117Prephenate dehydratase
864545436Syntaxin
1255445540Pumilio-family RNA binding repeat
765655640Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11112118Pterin binding enzyme
11111117ER lumen protein retaining receptor
322232216Glycoprotease family
2111218Histidinol dehydrogenase
953444332impB/mucB/samB family
11111128
12111118Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1113Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
11111117Ribosomal L29 protein
3111118Ribosomal L39 protein
311121110Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
31111119Translationally controlled tumour protein
88Glycosyl hydrolase family 7
421122214RNA pseudouridylate synthase
966566745Histone deacetylase domain
311211211POT family
211131110PWWP domain
161381517131395SET domain
732223221Isochorismatase family
311117Permease family
11211118Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
945545638XPG I-region
111115Acetokinase family
13254116DNA photolyase
111115Cation-independent mannose-6-phosphate receptor repeat
11Nitroreductase family
1121117Cytosol aminopeptidase family, catalytic domain
14213213Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
343223320Acyl CoA binding protein
1244555439Cullin family
112Elongation factor TS
945344332FAD binding domain
726