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PFAM Domains • Trichoderma harzianum TR274 v1.0
Annotations/GenomesTrias1Triat2Triha1Trihar1Trilo3Trire2TrireRUTC30_1TriviGv29_8_2TotalAnnotation Description
PFAMs
9,1179,14010,18510,2017,5216,5077,8429,84470,357
1127 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
4651525344444649385ATPase family associated with various cellular activities (AAA)
5647616247464762428ABC transporter
4444344431ATP synthase alpha/beta family, nucleotide-binding domain
1413151414141414112Elongation factor Tu GTP binding domain
121011119991081Helix-loop-helix DNA-binding domain
5544333532Hsp20/alpha crystallin family
8899878865Hsp70 protein
9988988968KH domain
111111118SH2 domain
2221222222242222177SH3 domain
1010101010710976Actin
117135154160806382171962Ankyrin repeat
4244222424PAN domain
7777777756ADP-ribosylation factor family
2020222216161721154Eukaryotic aspartyl protease
4444444432Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
111111118Cytochrome c
111112119Double-stranded RNA binding motif
1818171616201618139EF hand
1111111184Fe-4S binding domain
4322212218Fibronectin type III domain
2222222216Globin
1823313013101427166Glutathione S-transferase, C-terminal domain
1122111211Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
131010108581175Homeodomain
3333222321lactate/malate dehydrogenase, NAD binding domain
11Lipocalin / cytosolic fatty-acid binding protein family
4544444534Myosin head (motor domain)
7266116117666968118692Cytochrome P450
105112111112101106108126881Protein kinase domain
2222252515141525163Pyridine nucleotide-disulphide oxidoreductase
2424242422232425190Ras family
1515141413131314111Response regulator receiver domain
2331323522RNase H
5960585856595857465RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
2222222216Copper/zinc superoxide dismutase (SODC)
2233223320Iron/manganese superoxide dismutases, alpha-hairpin domain
2736342915151529200Subtilase family
7874909054765986607Sugar (and other) transporter
121213131111101496Thioredoxin
2233212217Trypsin
5555566542Tubulin/FtsZ family, GTPase domain
4544424431von Willebrand factor type A domain
6462737555674863507Zinc finger, C2H2 type
3938393939323738301Zinc finger, C3HC4 type (RING finger)
59107352950Zinc knuckle
3333222220Protein-tyrosine phosphatase
1601701992021161181201811,266short chain dehydrogenase
798810610549535192623Zinc-binding dehydrogenase
6555565542Thiolase, N-terminal domain
2022323316171626182Beta-ketoacyl synthase, N-terminal domain
55455555392Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
2211111211Enolase, C-terminal TIM barrel domain
1124Cytochrome C and Quinol oxidase polypeptide I
8811118791072Glutamine amidotransferase class-I
101010101010101080TCP-1/cpn60 chaperonin family
2266222426Glutamine synthetase, catalytic domain
2222222216Triosephosphate isomerase
1716181818161719139E1-E2 ATPase
8799778964Core histone H2A/H2B/H3/H4
112Copper binding proteins, plastocyanin/azurin family
5466444538Alpha amylase, catalytic domain
1211221212Phorbol esters/diacylglycerol binding domain (C1 domain)
10121096881275Bacterial transferase hexapeptide (six repeats)
4444363432tRNA synthetases class I (I, L, M and V)
8888777962Cyclin, N-terminal domain
2019333314121328172Carboxylesterase family
4444444432DNA polymerase family B
4644444434ATP synthase subunit C
6688566752Peroxidase
1619192088918117Beta-lactamase
2222212215C-5 cytosine-specific DNA methylase
2930272928272632228Calcineurin-like phosphoesterase
1110996451064Cellulase (glycosyl hydrolase family 5)
8799787863tRNA synthetases class II (D, K and N)
3838403935353638299Mitochondrial carrier protein
2120282818161829178Aminotransferase class I and II
81089888867Phosphoribosyl transferase domain
101010101010101080Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2222122215Ribosomal protein S4/S9 N-terminal domain
2222222317Ribosomal protein S12/S23
4433111219Bacterial regulatory helix-turn-helix proteins, AraC family
111111118Chaperonin 10 Kd subunit
1412141415141313109C2 domain
1917191916191917145PH domain
1212131312111414101bZIP transcription factor
2625393919202031219Aldehyde dehydrogenase family
3252764054212131922113102,353Fungal Zn(2)-Cys(6) binuclear cluster domain
2424272719212125188Cytochrome b5-like Heme/Steroid binding domain
4344444431Oxidoreductase molybdopterin binding domain
2018212116141823151Oxidoreductase NAD-binding domain
2627282925252427211SNF2 family N-terminal domain
2222222216Ribosomal protein S7p/S5e
1920202121202020161Ubiquitin-conjugating enzyme
7799777861Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
111111118Hsp90 protein
2222122215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
6555122531Chitin recognition protein
3333333324Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
4544433431Cupin
3333223221Annexin
111111118Eukaryotic-type carbonic anhydrase
34333334262-oxoacid dehydrogenases acyltransferase (catalytic domain)
7777777756Catalase
11111117Disintegrin
12212210UDP-glucoronosyl and UDP-glucosyl transferase
10811118881074Aminotransferase class-III
2222222216Ribosomal protein S19
111111118DNA gyrase B
9888545956Thiamine pyrophosphate enzyme, central domain
4355333329Lyase
2222222216Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111118Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
11114Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
91010101011111081Kinesin motor domain
2526262626262625206DnaJ domain
1414141414141414112Proteasome subunit
6788777858Major intrinsic protein
111111118ATP synthase
2444222222Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
111111118Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
11121211138111290Ubiquitin family
5555435537Cofilin/tropomyosin-type actin-binding protein
222222231714-3-3 protein
2233233321Alkaline phosphatase
4444444432Zinc carboxypeptidase
3636464728272645291Aldo/keto reductase family
1413151413141415112Myb-like DNA-binding domain
4444444432Forkhead domain
2114Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
2222212215Ribosomal protein S14p/S29e
3333434326FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
2222222216
8788777860Flavodoxin
111111118Calreticulin family
4333323425Common central domain of tyrosinase
981010738863Aminotransferase class-V
111111118Ribonucleotide reductase, small chain
3837383736493836309DEAD/DEAH box helicase
7274797475757273594Helicase conserved C-terminal domain
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
111111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2222122215Ribosomal protein L5
9877466754Pyridoxal-dependent decarboxylase conserved domain
3222222217Citrate synthase, C-terminal domain
5555355538GHMP kinases N terminal domain
5677355745Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
1413151512121215108Pyridoxal-phosphate dependent enzyme
1818212115151622146NUDIX domain
4445646538pfkB family carbohydrate kinase
5644443636Glycosyl hydrolases family 28
2222222216Ribosomal protein L3
2222222216Ribosomal protein L11, RNA binding domain
1111141496111288Histidine phosphatase superfamily (branch 1)
111111118Thymidylate synthase
112Lipoxygenase
4444344431ATP synthase alpha/beta chain, C terminal domain
5555455539Calponin homology (CH) domain
4566545641Glutamine amidotransferases class-II
2222222216Ribosomal protein S15
111111118Thaumatin family
2222222216Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
2222222216Ribosomal protein S2
3223222218SRF-type transcription factor (DNA-binding and dimerisation domain)
8888868862GATA zinc finger
3635394032333336284Amino acid permease
3376414533Prolyl oligopeptidase family
2222222216Ribosomal protein L30p/L7e
8888747858Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
6677444644Aconitase family (aconitate hydratase)
2122111212Glycosyl hydrolase family 10
3322212318Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
111111118Nucleoside diphosphate kinase
111111118Ribosomal protein S10p/S20e
3222333220Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
111111118SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
4344333327Polyprenyl synthetase
4455444535Hexokinase
101011108991178Dynamin family
211111119Transcription factor TFIID (or TATA-binding protein, TBP)
4444444432Rieske [2Fe-2S] domain
11Phytochrome region
22Proton-conducting membrane transporter
78996671062Biotin-requiring enzyme
111111118Phosphofructokinase
2222222216Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
3333333324FGGY family of carbohydrate kinases, N-terminal domain
1515222314121318132Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
2222222216Transcription factor TFIIB repeat
6777566650Cytidine and deoxycytidylate deaminase zinc-binding region
111121119Molybdopterin oxidoreductase
6776616948Chromo (CHRromatin Organisation MOdifier) domain
4444444432Phosphatidylinositol-specific phospholipase C, Y domain
5555565642Phosphatidylinositol-specific phospholipase C, X domain
101013135561274D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2222222216Malic enzyme, N-terminal domain
11114PEP-utilising enzyme, mobile domain
22221111126-phosphogluconate dehydrogenase, C-terminal domain
101088788968Multicopper oxidase
11111010810101080WW domain
111111118Ribosomal RNA adenine dimethylase
11121118Yeast PIR protein repeat
1281381471481141231211481,067WD domain, G-beta repeat
5544555538Heavy-metal-associated domain
4354444331Adenylate kinase
2222222216Phosphoglucomutase/phosphomannomutase, C-terminal domain
1122222214Ribosomal protein S8
111111118Ribosomal protein S11
4344344430LIM domain
125511520Matrixin
2211211111Regulator of chromosome condensation (RCC1) repeat
2222222216Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2222222216chorismate binding enzyme
333333332460s Acidic ribosomal protein
4444444432Prenyltransferase and squalene oxidase repeat
6766756851Protein kinase C terminal domain
111111118Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
7777777756Bromodomain
101011115881073Acyl-CoA dehydrogenase, C-terminal domain
1413141414151414112Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
3444333529Ribonuclease T2 family
3333333425HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
6788455750Serine carboxypeptidase
8888888864Phosphatidylinositol 3- and 4-kinase
2233222218Transketolase, thiamine diphosphate binding domain
4444333429Glycosyl hydrolases family 11
4455444535Inositol monophosphatase family
4444434431Glutaredoxin
5455323431Isocitrate lyase family
2222222216Serine hydroxymethyltransferase
2266222325Iron-containing alcohol dehydrogenase
2222122215Ribosomal protein L10
3333263326KOW motif
11Negative factor, (F-Protein) or Nef
3233323322RF-1 domain
5455555539Sodium:solute symporter family
111111118Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
6677566750Protein phosphatase 2C
3333233323Nucleotidyl transferase
7913145441066Carbonic anhydrase
111112119Phosphoribulokinase / Uridine kinase family
7766566649Fatty acid desaturase
6666666648MutS domain V
111111118Delta-aminolevulinic acid dehydratase
5355333431Arginase family
6666666648MCM P-loop domain
111111118Squalene/phytoene synthase
910101088111278FHA domain
5849575732374064394AMP-binding enzyme
3333333324G-protein alpha subunit
76778781060HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
12121111910101186His Kinase A (phospho-acceptor) domain
3333332323Armadillo/beta-catenin-like repeat
2935363122242340240Tetratricopeptide repeat
4433454431Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
111111111111111188BRCA1 C Terminus (BRCT) domain
6666666648Glycosyl transferases group 1
3444434329Glycosyl transferase family 2
1111131110SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
11Pectate lyase
3222112215ribonuclease
111111118Urease, gamma subunit
5555455539CoA-ligase
3329424014192143241Phosphopantetheine attachment site
3333333324Formyl transferase
91110109891076Metallopeptidase family M24
1514141414161413114Leucine Rich Repeat
5769808038224077463alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
3444444431PB1 domain
2222222216Staphylococcal nuclease homologue
10101010910101079Rab-GTPase-TBC domain
111111118Tudor domain
11111117WH1 domain
4454455334Zinc finger, ZZ type
111111118HRDC domain
9999999972CBS domain
2222222216Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
111111118Clp protease
5555555540S1 RNA binding domain
111111118HIUase/Transthyretin family
5446333432AhpC/TSA family
4444444432tRNA synthetases class I (W and Y)
112UvrD/REP helicase N-terminal domain
6499644850Rhodanese-like domain
2222222216Universal stress protein family
5552616144404965427Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
910999810973tRNA synthetase class II core domain (G, H, P, S and T)
111111118SpoU rRNA Methylase family
2222222216Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
111111118PDZ domain
4433333326Class II Aldolase and Adducin N-terminal domain
4444444432Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5355535536Fes/CIP4, and EFC/F-BAR homology domain
5666555543IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
6656656545Phospholipase D Active site motif
111111118Regulator of G protein signaling domain
4444444432GTPase-activator protein for Ras-like GTPase
4444444432RasGEF domain
4444424430RasGEF N-terminal motif
8888888864RhoGAP domain
5666656646RhoGEF domain
3544333328SPRY domain
4333333325RNA polymerase Rpb1, domain 2
2233233321Guanylate kinase
4444444432Gelsolin repeat
910108778968UBA/TS-N domain
1918202015151719143PHD-finger
111111118GGL domain
6666666648HECT-domain (ubiquitin-transferase)
11112118Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
5555444537Ribonuclease III domain
3333323323Region in Clathrin and VPS
3333333324RanBP1 domain
2222222216PPIC-type PPIASE domain
3233322321Zn-finger in Ran binding protein and others
1816201815151516133Zinc finger C-x8-C-x5-C-x3-H type (and similar)
2222212316Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
5863666445515661464F-box domain
111111118Elongation factor 1 gamma, conserved domain
3333333425Calpain family cysteine protease
2222122215Copper fist DNA binding domain
6555555642CRAL/TRIO domain
667810591061BTB/POZ domain
5644344434Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
3333333324Voltage gated chloride channel
2345222424Caspase domain
57109554853GDSL-like Lipase/Acylhydrolase
111111118Poly-adenylate binding protein, unique domain
3124363724252336236ABC transporter transmembrane region
11Integrase core domain
7677566751FAD binding domain
211425249101229144Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111111118HAMP domain
2222122215ribosomal L5P family C-terminus
5555555540Insulinase (Peptidase family M16)
3333333425Dehydrogenase E1 component
111111118Lumazine binding domain
6666656647Elongation factor G C-terminus
5466444538HMGL-like
4444344431DnaJ central domain
3311111112Starch binding domain
2222222216Ribosomal protein L1p/L10e family
98111110991178Cation transporting ATPase, C-terminus
111012111210111390Cation transporter/ATPase, N-terminus
2122111212dUTPase
7677344644Aconitase C-terminal domain
4433333427Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
2022313014171526175Acyl transferase domain
11111117Urease beta subunit
8777466752Dihydrodipicolinate synthetase family
3735363634313540284haloacid dehalogenase-like hydrolase
7910105771065Glycosyl hydrolases family 2
2627293018191930198Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
11114Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
1222111212Adenylosuccinate synthetase
111111118Asparaginase, N-terminal
2222222216Peptidase S24-like
3322122318Inorganic pyrophosphatase
11111313813111292Glycosyl hydrolases family 16
3322222218Glycosyl hydrolases family 15
1817191968816111NADH:flavin oxidoreductase / NADH oxidase family
54442225283-hydroxyacyl-CoA dehydrogenase, C-terminal domain
3333333324Glycosyl hydrolase family 20, catalytic domain
4544555537HhH-GPD superfamily base excision DNA repair protein
211111119AIR carboxylase
1312181812121318116GMC oxidoreductase
2233222319Asparagine synthase
2221212014141524151Fungal cellulose binding domain
5555555540Septin
1122111211EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
322221113Flavin-binding monooxygenase-like
3333333324tRNA synthetases class I (E and Q), catalytic domain
111111118tRNA synthetases class I (R)
4444434431XPG N-terminal domain
1515262811101120136Metallo-beta-lactamase superfamily
2322111113F5/8 type C domain
3333222321Choline/Carnitine o-acyltransferase
2122111111Putative esterase
111111118Ferrochelatase
2222222216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
2211222113Arginosuccinate synthase
111111118Electron transfer flavoprotein FAD-binding domain
3333333324RNB domain