PFAM Domains • Parasitella parasitica v1.0
Annotations/GenomesBacci1Lichy1Mucci2Parpar1Phybl2Rhimi1_1Umbra1TotalAnnotation Description
PFAMs
13,47810,4669,58411,3919,2168,6268,51571,276
117 transmembrane receptor (Secretin family)
5143333227 transmembrane sweet-taste receptor of 3 GCPR
53454442483840310ATPase family associated with various cellular activities (AAA)
67605246483435342ABC transporter
12599127761ATP synthase alpha/beta family, nucleotide-binding domain
1124EGF-like domain
25191719211818137Elongation factor Tu GTP binding domain
75513744353931312Helix-loop-helix DNA-binding domain
42737225Hsp20/alpha crystallin family
191411201210995Hsp70 protein
1915141112131397KH domain
111115SH2 domain
89654135374845360SH3 domain
1612111411111085Actin
7151429374564319Ankyrin repeat
15111210109976ADP-ribosylation factor family
35272721332023186Eukaryotic aspartyl protease
797677649Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
134Cytochrome b/b6/petB
231112111Cytochrome c
131111210Double-stranded RNA binding motif
5444431353334244EF hand
12111174Fe-4S binding domain
2211118Fibronectin type III domain
42222113Globin
20121387111586Glutathione S-transferase, C-terminal domain
623333121Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
55372723282918217Homeodomain
865553335lactate/malate dehydrogenase, NAD binding domain
22Lectin C-type domain
2115171716168110Myosin head (motor domain)
85644134543549362Cytochrome P450
3582772372342202101651,701Protein kinase domain
23191817161516124Pyridine nucleotide-disulphide oxidoreductase
82596060545139405Ras family
30331518181720151Response regulator receiver domain
12216RNase H
1371098891979695713RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11338Reverse transcriptase (RNA-dependent DNA polymerase)
533323221Copper/zinc superoxide dismutase (SODC)
11211118Iron/manganese superoxide dismutases, alpha-hairpin domain
31191616241511132Subtilase family
66464734282247290Sugar (and other) transporter
18141515131613104Thioredoxin
11Thyroglobulin type-1 repeat
11Trefoil (P-type) domain
554223627Trypsin
13138898665Tubulin/FtsZ family, GTPase domain
174127140292038769829Zinc finger, C2H2 type
9670644556062411Zinc finger, C3HC4 type (RING finger)
18214517702319213Zinc knuckle
736655335Protein-tyrosine phosphatase
49454534332771304short chain dehydrogenase
46282919232334202Zinc-binding dehydrogenase
9610855649Thiolase, N-terminal domain
323322217Beta-ketoacyl synthase, N-terminal domain
544442232Fe-2S iron-sulfur cluster binding domain
332222115Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
131199109869Glutamine amidotransferase class-I
1513111115111187TCP-1/cpn60 chaperonin family
11ATP synthase A chain
975565441Glutamine synthetase, catalytic domain
21111118Triosephosphate isomerase
49263040262625222E1-E2 ATPase
2124141420149116Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
231111615Alpha amylase, catalytic domain
17144117111074Phorbol esters/diacylglycerol binding domain (C1 domain)
8887581054Bacterial transferase hexapeptide (six repeats)
644744433tRNA synthetases class I (I, L, M and V)
18211819182016130Cyclin, N-terminal domain
23211615Carboxylesterase family
545544532DNA polymerase family B
835444432ATP synthase subunit C
1111116Legume lectin domain
424423221Peroxidase
114Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
13111411Beta-lactamase
132141214C-5 cytosine-specific DNA methylase
1113NADH dehydrogenase
49393736343329257Calcineurin-like phosphoesterase
553444833Cellulase (glycosyl hydrolase family 5)
866666644tRNA synthetases class II (D, K and N)
80666361545245421Mitochondrial carrier protein
27212020201815141Aminotransferase class I and II
14131371110977Phosphoribosyl transferase domain
15151515141611101Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
12211119Phosphoglycerate kinase
343333322Ribosomal protein S4/S9 N-terminal domain
444444327Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
112221110Chaperonin 10 Kd subunit
36322319222019171C2 domain
85794435485345389PH domain
48322831192613197bZIP transcription factor
20251515121213112Aldehyde dehydrogenase family
92804657475260434Fungal Zn(2)-Cys(6) binuclear cluster domain
60424134393730283Cytochrome b5-like Heme/Steroid binding domain
232211213Oxidoreductase molybdopterin binding domain
19171614131314106Oxidoreductase NAD-binding domain
26242024202221157SNF2 family N-terminal domain
454433326Ribosomal protein S7p/S5e
26232222202220155Ubiquitin-conjugating enzyme
11108787657Isocitrate/isopropylmalate dehydrogenase
645444431Ribosomal Proteins L2, RNA binding domain
554444329Hsp90 protein
423262221Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
222222214Dihydrofolate reductase
486312327Cysteine-rich secretory protein family
545543228Ribosomal protein S3, C-terminal domain
6565444342-oxoacid dehydrogenases acyltransferase (catalytic domain)
734423326Catalase
623322321Disintegrin
20510917557UDP-glucoronosyl and UDP-glucosyl transferase
856665541Aminotransferase class-III
744443329Ribosomal protein S19
11111117DNA gyrase B
726533329Thiamine pyrophosphate enzyme, central domain
444443427Lyase
533333323Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
122222415Ferritin-like domain
432222116Adenylate and Guanylate cyclase catalytic domain
22111119ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
21111118Indole-3-glycerol phosphate synthase
443333222Pyruvate kinase, barrel domain
36292829202818188Kinesin motor domain
45353942343730262DnaJ domain
17141414141413100Proteasome subunit
122221414Major intrinsic protein
21222110ATP synthase
22Glycosyl hydrolase family 1
12887663503'5'-cyclic nucleotide phosphodiesterase
11111218Profilin
544454228Ribosomal protein L22p/L17e
443333323Ribosomal protein L14p/L23e
31232217232120157Ubiquitin family
786746644Cofilin/tropomyosin-type actin-binding protein
66333432814-3-3 protein
554333225Alkaline phosphatase
22Zinc carboxypeptidase
42292618201828181Aldo/keto reductase family
39372319203325196Myb-like DNA-binding domain
14101010106767Forkhead domain
11125Glycosyl hydrolases family 32 N-terminal domain
111411110Ribosomal protein L16p/L10e
544343326Ribosomal protein S14p/S29e
976465744FKBP-type peptidyl-prolyl cis-trans isomerase
221222112Glutathione peroxidase
54534324
2117159131114100Flavodoxin
11112118Calreticulin family
967855747Aminotransferase class-V
323311114Ribonucleotide reductase, small chain
52514852474745342DEAD/DEAH box helicase
99888184747775578Helicase conserved C-terminal domain
21111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
544433326Ribosomal protein L23
331111111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
543354327Ribosomal protein L5
644453632Pyridoxal-dependent decarboxylase conserved domain
221221111Citrate synthase, C-terminal domain
766666643GHMP kinases N terminal domain
1211119118870Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
129109991169Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
26182320162015138NUDIX domain
1067666647pfkB family carbohydrate kinase
55297331Glycosyl hydrolases family 28
524433223Ribosomal protein L3
644454431Ribosomal protein L11, RNA binding domain
1311111111101077Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
11899127763ATP synthase alpha/beta chain, C terminal domain
13161210912880Calponin homology (CH) domain
11Bacterial dnaA protein
10912566553Glutamine amidotransferases class-II
343223320Ribosomal protein S15
232221214'Cold-shock' DNA-binding domain
784554437Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
534423223Ribonucleotide reductase, all-alpha domain
734443328Ribosomal protein S2
141310979668SRF-type transcription factor (DNA-binding and dimerisation domain)
65433638353922278GATA zinc finger
35192110191825147Amino acid permease
956766847Prolyl oligopeptidase family
665554132Ribosomal protein L30p/L7e
655324530Histidine phosphatase superfamily (branch 2)
22111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
666655640Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
443313523Glycosyl hydrolases family 17
554353328Ribosomal protein S5, N-terminal domain
646645334Nucleoside diphosphate kinase
766653437Tetraspanin family
333333220Ribosomal protein S10p/S20e
46252233222020188Arrestin (or S-antigen), N-terminal domain
13111119Phosphoglucose isomerase
3222110Carbohydrate phosphorylase
422222115SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
443343324Ribosomal protein L6
655545333Polyprenyl synthetase
1712111078873Hexokinase
9871087655Dynamin family
11111117Biopterin-dependent aromatic amino acid hydroxylase
322221113Transcription factor TFIID (or TATA-binding protein, TBP)
555454432Rieske [2Fe-2S] domain
246Proton-conducting membrane transporter
1513121310101083Biotin-requiring enzyme
422222216Phosphofructokinase
322222215Ribosomal protein S17
233312115Hydroxymethylglutaryl-coenzyme A reductase
956666543FGGY family of carbohydrate kinases, N-terminal domain
33221112Sodium:dicarboxylate symporter family
1714141111121291Enoyl-CoA hydratase/isomerase
534444327Ribosomal protein S9/S16
11PTS HPr component phosphorylation site
323332319Transcription factor TFIIB repeat
10109846754Cytidine and deoxycytidylate deaminase zinc-binding region
21112119Molybdopterin oxidoreductase
231591822186111Chromo (CHRromatin Organisation MOdifier) domain
665555537D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
765545335Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
3232221156-phosphogluconate dehydrogenase, C-terminal domain
785553538Multicopper oxidase
26168127131294WW domain
333333321Ribosomal RNA adenine dimethylase
2041711581641621571451,161WD domain, G-beta repeat
11Calponin family repeat
545443429Heavy-metal-associated domain
856655439Adenylate kinase
232222215Phosphoglucomutase/phosphomannomutase, C-terminal domain
543333223Ribosomal protein S8
434233322Ribosomal protein S11
19121316141512101LIM domain
331544424Regulator of chromosome condensation (RCC1) repeat
444424325Ribosomal protein S13/S18
2111117Tau and MAP protein, tubulin-binding repeat
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
422222216chorismate binding enzyme
159887755960s Acidic ribosomal protein
444444428Prenyltransferase and squalene oxidase repeat
171491011101081Protein kinase C terminal domain
11Spectrin repeat
11111117Single-strand binding protein family
21111118S-adenosylmethionine synthetase, N-terminal domain
23172018141812122Bromodomain
21201516161712117Acyl-CoA dehydrogenase, C-terminal domain
27232620212219158Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
221143316Ribonuclease T2 family
29242019141412132HSF-type DNA-binding
222322215SRP54-type protein, GTPase domain
312221112Urease alpha-subunit, N-terminal domain
795674341Serine carboxypeptidase
151013121012981Phosphatidylinositol 3- and 4-kinase
632222219Transketolase, thiamine diphosphate binding domain
1111127WHEP-TRS domain
222222214Inositol monophosphatase family
8810856651Glutaredoxin
422212215Isocitrate lyase family
222222214Serine hydroxymethyltransferase
21111118Iron-containing alcohol dehydrogenase
314423118Ribosomal protein L10
14510986759KOW motif
11111117Ribosomal protein L34
11114Ribosomal protein L33
333323219RF-1 domain
111115Sodium:solute symporter family
21111118Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
312211111IMP dehydrogenase / GMP reductase domain
543332222Glucose-6-phosphate dehydrogenase, NAD binding domain
171110101111676Protein phosphatase 2C
776646541Nucleotidyl transferase
322121112Carbonic anhydrase
322212214Phosphoribulokinase / Uridine kinase family
13786167663Fatty acid desaturase
677666644MutS domain V
11211118Delta-aminolevulinic acid dehydratase
352232320Arginase family
666666642MCM P-loop domain
333443222Squalene/phytoene synthase
29251720181514138FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
57473734363025266AMP-binding enzyme
17141212108982G-protein alpha subunit
31332123231916166HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
151879881277His Kinase A (phospho-acceptor) domain
198109108771Armadillo/beta-catenin-like repeat
57443624313736265Tetratricopeptide repeat
1898674860Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
13111066121270BRCA1 C Terminus (BRCT) domain
9109787757Glycosyl transferases group 1
854253633Glycosyl transferase family 2
942437332SAM domain (Sterile alpha motif)
23121312linker histone H1 and H5 family
1211117Ribosomal protein L7/L12 C-terminal domain
312221112Urease, gamma subunit
764433330CoA-ligase
988684649Phosphopantetheine attachment site
222222214Formyl transferase
11Cellulose binding domain
16131515141512100Metallopeptidase family M24
45353313332726212Leucine Rich Repeat
3330258231632167alpha/beta hydrolase fold
443333323RNA polymerase Rpb2, domain 6
171789108877PB1 domain
222222214Staphylococcal nuclease homologue
45322731292220206Rab-GTPase-TBC domain
11111117Tudor domain
322311214WH1 domain
965655743Zinc finger, ZZ type
212111210HRDC domain
24171817181514123CBS domain
643354227Ribosomal protein L13
544443226Ribosomal protein L4/L1 family
11111117Clp protease
453434528S1 RNA binding domain
11111117HIUase/Transthyretin family
865655742AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
121116UvrD/REP helicase N-terminal domain
911812871065Rhodanese-like domain
17912141291083Universal stress protein family
49334326272839245Acetyltransferase (GNAT) family
11112118SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
121211911121178tRNA synthetase class II core domain (G, H, P, S and T)
333333321SpoU rRNA Methylase family
333332320Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
11114PDZ domain
222222214Class II Aldolase and Adducin N-terminal domain
22Adenoviral fibre protein (repeat/shaft region)
123Diacylglycerol kinase accessory domain
12861068454Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
121012128101175Fes/CIP4, and EFC/F-BAR homology domain
12149689664IQ calmodulin-binding motif
333333220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
1578687556Phospholipase D Active site motif
127815107463Regulator of G protein signaling domain
13910101010668GTPase-activator protein for Ras-like GTPase
32201719181911136RasGEF domain
23149121011685RasGEF N-terminal motif
49383334293123237RhoGAP domain
51413131282722231RhoGEF domain
121312111011877SPRY domain
453333324RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
897785650Gelsolin repeat
22161313151819116UBA/TS-N domain
38312324263128201PHD-finger
223334421GGL domain
131110109101073HECT-domain (ubiquitin-transferase)
11211219Helix-hairpin-helix motif
11BRCA2 repeat
251322520MSP (Major sperm protein) domain
333223319Ribonuclease III domain
332622220Region in Clathrin and VPS
422222216RanBP1 domain
322222215PPIC-type PPIASE domain
442544427Zn-finger in Ran binding protein and others
27271714142121141Zinc finger C-x8-C-x5-C-x3-H type (and similar)
12216B-box zinc finger
1111127Poly(ADP-ribose) polymerase catalytic domain
121116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
185104105122027668752F-box domain
422221114Elongation factor 1 gamma, conserved domain
11111117Calpain family cysteine protease
966476442Copper fist DNA binding domain
1610101187769CRAL/TRIO domain
2117712311213113BTB/POZ domain
1611788131073Ricin-type beta-trefoil lectin domain
111115Inhibitor of Apoptosis domain
332222216Voltage gated chloride channel
635454128Caspase domain
14101512891179GDSL-like Lipase/Acylhydrolase
1092655441Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
31292520241116156ABC transporter transmembrane region
1427Integrase core domain
9108797858FAD binding domain
23111210Condensation domain
21111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
883232228HAMP domain
554454330ribosomal L5P family C-terminus
1377798758Insulinase (Peptidase family M16)
796544540Dehydrogenase E1 component
11111117Lumazine binding domain
987678752Elongation factor G C-terminus
676664540HMGL-like
767565541DnaJ central domain
11Sulfotransferase domain
11Starch binding domain
433533122Ribosomal protein L1p/L10e family
22141316131212102Cation transporting ATPase, C-terminus
32151821151617134Cation transporter/ATPase, N-terminus
1111116dUTPase
666655640Aconitase C-terminal domain
967675545Amino acid kinase family
21111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
423322117Acyl transferase domain
312221112Urease beta subunit
333312217Dihydrodipicolinate synthetase family
70414929423640307haloacid dehalogenase-like hydrolase
11Glycosyl hydrolases family 2
221114138111493Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
111115Translation initiation factor IF-3, C-terminal domain
11111117Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
433234322Peptidase S24-like
454444227Inorganic pyrophosphatase
1166747950Glycosyl hydrolases family 16
543433325Glycosyl hydrolases family 15
2781271710687NADH:flavin oxidoreductase / NADH oxidase family
2222222143-hydroxyacyl-CoA dehydrogenase, C-terminal domain
644344833Glycosyl hydrolase family 20, catalytic domain
444434326HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
915353430GMC oxidoreductase
537723330Asparagine synthase
21113614Fungal cellulose binding domain
22221415161410113Septin
222142215EF-1 guanine nucleotide exchange domain
312211111Homoserine dehydrogenase
11316Flavin-binding monooxygenase-like
333333321tRNA synthetases class I (E and Q), catalytic domain
433333120tRNA synthetases class I (R)
774654639XPG N-terminal domain
141412911131285Metallo-beta-lactamase superfamily
11121129F5/8 type C domain
1156646442Choline/Carnitine o-acyltransferase
1111116Putative esterase
744523429Glycosyl hydrolase family 9
11111117Ferrochelatase
434334324Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
31111119Arginosuccinate synthase
2111117Electron transfer flavoprotein FAD-binding domain
13109888763RNB domain
19141213119684CNH domain
645545433Diacylglycerol kinase catalytic domain
151212151391187Dual specificity phosphatase, catalytic domain
22221211MyTH4 domain
1412511891170P21-Rho-binding domain
40302331252621196PX domain
12105746650Ras association (RalGDS/AF-6) domain
877767547UBX domain
1477877757VHS domain
1111116Phosphoinositide 3-kinase C2
644433327DAHP synthetase I family
776655844Carbon-nitrogen hydrolase
11N-acetyltransferase
11111117Prephenate dehydratase
14611777658Syntaxin
151314129111185Pumilio-family RNA binding repeat
776668646Histone-like transcription factor (CBF/NF-Y) and archaeal histone
222222214Pterin binding enzyme
432221115ER lumen protein retaining receptor
222212213tRNA N6-adenosine threonylcarbamoyltransferase
11111117Histidinol dehydrogenase
433333322impB/mucB/samB family
11Ribonuclease P
46333221
543333223Ribosomal L15
543743228Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
543332222Ribosomal L29 protein
233323218Ribosomal L39 protein
532222218Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
333314118RNA pseudouridylate synthase
898776550Histone deacetylase domain
22221110Glycosyltransferase family 10 (fucosyltransferase) C-term
856534435POT family
611422319PWWP domain
26212422172216148SET domain
14410826549Isochorismatase family
1056666443Permease family
323232217Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
745544534XPG I-region