PFAM Domains • Daedalea quercina v1.0
Annotations/GenomesBjead1_1Cersu1Daequ1Dicsq1Fompi1Gansp1Phchr1Phlbr1PosplRSB12_1Trave1Wolco1TotalAnnotation Description
PFAMs
8,5587,6367,7008,0728,2818,2655,9279,1607,7468,6147,82587,784
5045504451423853424747509ATPase family associated with various cellular activities (AAA)
4648403847395053464538490ABC transporter
4444444444444ATP synthase alpha/beta family, nucleotide-binding domain
111115EGF-like domain
1514141414141516141414158Elongation factor Tu GTP binding domain
1210111019121113111111131Helix-loop-helix DNA-binding domain
75814696859784Hsp20/alpha crystallin family
88814159712977104Hsp70 protein
88714888898793KH domain
1111111111111SH2 domain
2625262425282226212521269SH3 domain
11TNFR/NGFR cysteine-rich region
101110101010613101010110Actin
2238231728242233292630292Ankyrin repeat
7677776777775ADP-ribosylation factor family
5541434440495356455339518Eukaryotic aspartyl protease
3333333343334Cyclic nucleotide-binding domain
224Cytochrome b(C-terminal)/b6/petD
1225Cytochrome b/b6/petB
1311111111113Cytochrome c
71097773595675Double-stranded RNA binding motif
2217181917202421151816207EF hand
11111121122144Fe-4S binding domain
111111111110Fibronectin type III domain
2111111210Globin
2619121815181415192515196Glutathione S-transferase, C-terminal domain
1111221111315Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
117107111271189699Homeodomain
11114Laminin EGF domain
2232422222225lactate/malate dehydrogenase, NAD binding domain
11Lipocalin / cytosolic fatty-acid binding protein family
5556655744456Myosin head (motor domain)
1892071301721672031132371971851921,992Cytochrome P450
2011891381471531601202011501861521,797Protein kinase domain
2213161619171619171619190Pyridine nucleotide-disulphide oxidoreductase
2419242225252825262925272Ras family
111098989129910104Response regulator receiver domain
1234816241514212119RNase H
7059686066595970626664703RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
2112653332Reverse transcriptase (RNA-dependent DNA polymerase)
211111111111Copper/zinc superoxide dismutase (SODC)
2423223223227Iron/manganese superoxide dismutases, alpha-hairpin domain
3936354625248Subtilase family
3037313132314734303132366Sugar (and other) transporter
127989910131089104Thioredoxin
5455655555555Tubulin/FtsZ family, GTPase domain
10464624923454von Willebrand factor type A domain
6353695063565267956054682Zinc finger, C2H2 type
7360655965592667555765651Zinc finger, C3HC4 type (RING finger)
2532213115407118952842418Zinc knuckle
2222222222222Protein-tyrosine phosphatase
69831158213285751011051131111,071short chain dehydrogenase
4556566459455764587362639Zinc-binding dehydrogenase
4554556754454Thiolase, N-terminal domain
546411521073865Beta-ketoacyl synthase, N-terminal domain
32323333333312Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
1211112211114Enolase, C-terminal TIM barrel domain
1326Cytochrome C and Quinol oxidase polypeptide I
879711776910990Glutamine amidotransferase class-I
910101010109991010106TCP-1/cpn60 chaperonin family
112ATP synthase A chain
6253734543345Glutamine synthetase, catalytic domain
1111111211112Triosephosphate isomerase
1216141416181115131111151E1-E2 ATPase
1514151915161618151415172Core histone H2A/H2B/H3/H4
2125Copper binding proteins, plastocyanin/azurin family
9668678766877Alpha amylase, catalytic domain
4666565656661Phorbol esters/diacylglycerol binding domain (C1 domain)
4335454445445Bacterial transferase hexapeptide (six repeats)
3333336423336tRNA synthetases class I (I, L, M and V)
1413111211131414111010133Cyclin, N-terminal domain
163318242225924162020227Carboxylesterase family
4444444414441DNA polymerase family B
3333433343335ATP synthase subunit C
211721421017162272130Peroxidase
7325653967255Beta-lactamase
5334355444343C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
2626282527241927242727280Calcineurin-like phosphoesterase
12912121411815121312130Cellulase (glycosyl hydrolase family 5)
6667666766668tRNA synthetases class II (D, K and N)
3736393738403438373639411Mitochondrial carrier protein
1516171816171314192016181Aminotransferase class I and II
7666665767668Phosphoribosyl transferase domain
1415131213141414141414151Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111111111Phosphoglycerate kinase
2222222222222Ribosomal protein S4/S9 N-terminal domain
2222222222222Ribosomal protein S12/S23
111111111110Chaperonin 10 Kd subunit
1512121213121616151413150C2 domain
2016202217201818192021211PH domain
6655458846461bZIP transcription factor
1924221919191923191716216Aldehyde dehydrogenase family
6970617756823571448466715Fungal Zn(2)-Cys(6) binuclear cluster domain
2625272325222332252429281Cytochrome b5-like Heme/Steroid binding domain
6433334644646Oxidoreductase molybdopterin binding domain
12129121112131310159128Oxidoreductase NAD-binding domain
2726222121221226242026247SNF2 family N-terminal domain
2222222123222Ribosomal protein S7p/S5e
2118212021212023222021228Ubiquitin-conjugating enzyme
5555655555556Isocitrate/isopropylmalate dehydrogenase
2222222222222Ribosomal Proteins L2, RNA binding domain
2322423422228Hsp90 protein
2222222223223Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
22Chitin recognition protein
6222271222230Cysteine-rich secretory protein family
11112111211Ribosomal protein S3, C-terminal domain
89674591176577Cupin
1326Chalcone and stilbene synthases, N-terminal domain
33333323333322-oxoacid dehydrogenases acyltransferase (catalytic domain)
3343335343438Catalase
11111218Disintegrin
9526376119159UDP-glucoronosyl and UDP-glucosyl transferase
5555755555557Aminotransferase class-III
2122222222221Ribosomal protein S19
1112111111112DNA gyrase B
3344343334337Thiamine pyrophosphate enzyme, central domain
3333333333333Lyase
2111112211114Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111111111111Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
2122221121117Indole-3-glycerol phosphate synthase
2213211111116Aromatic amino acid lyase
1111111111111Pyruvate kinase, barrel domain
10999710101089899Kinesin motor domain
3122362833322230323134331DnaJ domain
1412141414141415131414152Proteasome subunit
10845468625462Major intrinsic protein
3111111111113ATP synthase
2324232222125Glycosyl hydrolase family 1
11111111111113'5'-cyclic nucleotide phosphodiesterase
1111111211112Profilin
2221212121117Ribosomal protein L22p/L17e
2222222222222Ribosomal protein L14p/L23e
1715151717191213191716177Ubiquitin family
5545554554552Cofilin/tropomyosin-type actin-binding protein
222122223222214-3-3 protein
3312122313122Alkaline phosphatase
1211111111112Zinc carboxypeptidase
6458596153485379596754655Aldo/keto reductase family
1210141314121314131212139Myb-like DNA-binding domain
5585955656564Forkhead domain
1231310Glycosyl hydrolases family 32 N-terminal domain
1111111111111Ribosomal protein L16p/L10e
2121221222219Ribosomal protein S14p/S29e
33331133533343FKBP-type peptidyl-prolyl cis-trans isomerase
1111111112112Glutathione peroxidase
2211212212218
995657131266482Flavodoxin
112Protamine P1
112Tropomyosin
1111111111111Calreticulin family
641332915236Common central domain of tyrosinase
75977738610877Aminotransferase class-V
1222324723230Ribonucleotide reductase, small chain
4953515258464466484651564DEAD/DEAH box helicase
86888789867559115827688931Helicase conserved C-terminal domain
1111311211215EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222222222Ribosomal protein L23
1111111111111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111111111111Ribosomal protein L5
5444333344441Pyridoxal-dependent decarboxylase conserved domain
3433353343438Citrate synthase, C-terminal domain
5555554555554GHMP kinases N terminal domain
7766676867975Biotin carboxylase, N-terminal domain
1111111113113Tryptophan synthase alpha chain
8810911910891110103Pyridoxal-phosphate dependent enzyme
169151515151115141515155NUDIX domain
4433332433335pfkB family carbohydrate kinase
668712103589983Glycosyl hydrolases family 28
2222222222222Ribosomal protein L3
2222222222222Ribosomal protein L11, RNA binding domain
10887886897988Histidine phosphatase superfamily (branch 1)
1111111211112Thymidylate synthase
4444444444444ATP synthase alpha/beta chain, C terminal domain
5444544444446Calponin homology (CH) domain
5545454545450Glutamine amidotransferases class-II
2222221322222Ribosomal protein S15
537413103628465Thaumatin family
1111111111111Fructose-1-6-bisphosphatase, N-terminal domain
1111111312114Ribonucleotide reductase, all-alpha domain
232322222222Ribosomal protein S2
2222232212222SRF-type transcription factor (DNA-binding and dimerisation domain)
9108109117139910105GATA zinc finger
2625212422221629252423257Amino acid permease
6464542554651Prolyl oligopeptidase family
1112111111112Ribosomal protein L30p/L7e
11914141514818121512142Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
54445445451054Aconitase family (aconitate hydratase)
4635296836456Glycosyl hydrolase family 10
1111111111111Glycosyl hydrolases family 17
2222222222222Ribosomal protein S5, N-terminal domain
2222222222222Nucleoside diphosphate kinase
112222121115Tetraspanin family
11Galactoside-binding lectin
2222222222222Ribosomal protein S10p/S20e
418748547452Arrestin (or S-antigen), N-terminal domain
1111211111112Phosphoglucose isomerase
1111111111111Carbohydrate phosphorylase
1111311111113SecY translocase
1111111111111Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2122222222221Ribosomal protein L6
3538343653447Polyprenyl synthetase
2222222222222Hexokinase
8710691151068787Dynamin family
1211121111113Transcription factor TFIID (or TATA-binding protein, TBP)
4443433444340Rieske [2Fe-2S] domain
112Phytochrome region
22Proton-conducting membrane transporter
7888888889888Biotin-requiring enzyme
1111111211112Phosphofructokinase
2223222322224Ribosomal protein S17
1111111111111Hydroxymethylglutaryl-coenzyme A reductase
3333343434336FGGY family of carbohydrate kinases, N-terminal domain
86787887981288Enoyl-CoA hydratase/isomerase
2222221222221Ribosomal protein S9/S16
2224232222225Transcription factor TFIIB repeat
65106985887880Cytidine and deoxycytidylate deaminase zinc-binding region
111111111110Molybdopterin oxidoreductase
197911131961175911181Chromo (CHRromatin Organisation MOdifier) domain
1111111111111Phosphatidylinositol-specific phospholipase C, Y domain
1111121211113Phosphatidylinositol-specific phospholipase C, X domain
66971066687879D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
3333233633436Malic enzyme, N-terminal domain
12122123222206-phosphogluconate dehydrogenase, C-terminal domain
29613717510410588Multicopper oxidase
108871086977888WW domain
2122221222220Ribosomal RNA adenine dimethylase
2121781251921411631161431171291391,655WD domain, G-beta repeat
4544374545449Heavy-metal-associated domain
3233333333332Adenylate kinase
211222221116Phosphoglucomutase/phosphomannomutase, C-terminal domain
2211212111216Ribosomal protein S8
2211211211115Ribosomal protein S11
6666565345557LIM domain
11Matrixin
4432323332332Regulator of chromosome condensation (RCC1) repeat
2121222221219Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2233222222224chorismate binding enzyme
333333332333260s Acidic ribosomal protein
5444444444546Prenyltransferase and squalene oxidase repeat
7576764676667Protein kinase C terminal domain
111111111110Single-strand binding protein family
1111111111111S-adenosylmethionine synthetase, N-terminal domain
11810811101011111010110Bromodomain
881010989128109101Acyl-CoA dehydrogenase, C-terminal domain
1413141416151416141415159Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
2222322622227Ribonuclease T2 family
4245454926449HSF-type DNA-binding
2222222222222SRP54-type protein, GTPase domain
1112111111112Urease alpha-subunit, N-terminal domain
331491810182128152411201Serine carboxypeptidase
22Apoptosis regulator proteins, Bcl-2 family
8888887889888Phosphatidylinositol 3- and 4-kinase
2222222222222Transketolase, thiamine diphosphate binding domain
112Glycosyl hydrolases family 11
11WHEP-TRS domain
4223462322232Inositol monophosphatase family
3344443544442Glutaredoxin
11444332434345Isocitrate lyase family
1111211211113Serine hydroxymethyltransferase
4353443433440Iron-containing alcohol dehydrogenase
1222223222222Ribosomal protein L10
5354546555552KOW motif
1111111119Ribosomal protein L34
3423322323330RF-1 domain
3242413342634Sodium:solute symporter family
1111111111111Imidazoleglycerol-phosphate dehydratase
1111111111313DNA polymerase family A
1112311111114IMP dehydrogenase / GMP reductase domain
1111111111111Glucose-6-phosphate dehydrogenase, NAD binding domain
84676759681076Protein phosphatase 2C
2233321322326Nucleotidyl transferase
5446534425244Carbonic anhydrase
111111111110Phosphoribulokinase / Uridine kinase family
15101191112620121610132Fatty acid desaturase
66657667861073MutS domain V
1111111111111Delta-aminolevulinic acid dehydratase
5475533554551Arginase family
8866666666670MCM P-loop domain
1111111111111Squalene/phytoene synthase
201181291581410138128FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
4235283427303053353334381AMP-binding enzyme
161314151416914151416156G-protein alpha subunit
1514151616191518262814196HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Haemagglutinin
11Cytochrome c oxidase subunit III
8555656855664His Kinase A (phospho-acceptor) domain
3333332343434Armadillo/beta-catenin-like repeat
2731292631282331342633319Tetratricopeptide repeat
2332331743435Ion transport protein
1111111111111DNA gyrase/topoisomerase IV, subunit A
10129811116109119106BRCA1 C Terminus (BRCT) domain
6667664666665Glycosyl transferases group 1
4353456544447Glycosyl transferase family 2
1112132112SAM domain (Sterile alpha motif)
3132332233328linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
11Pectate lyase
651311111121ribonuclease
1112111111112Urease, gamma subunit
3333333333333CoA-ligase
68109976968785Phosphopantetheine attachment site
2222221222221Formyl transferase
101010101010911111010111Metallopeptidase family M24
1515161616151415151417168Leucine Rich Repeat
5035364345502350326336463alpha/beta hydrolase fold
3333333333333RNA polymerase Rpb2, domain 6
6385753755761PB1 domain
2222222222222Staphylococcal nuclease homologue
11999987119108100Rab-GTPase-TBC domain
3111111111113Tudor domain
2212122122219WH1 domain
5434364436345Zinc finger, ZZ type
111111111110HRDC domain
91091099898910100CBS domain
2222222222222Ribosomal protein L13
2222222222222Ribosomal protein L4/L1 family
1111111111111Clp protease
3453532433439S1 RNA binding domain
1111111119HIUase/Transthyretin family
6644446645453AhpC/TSA family
4344444543443tRNA synthetases class I (W and Y)
1211121111315UvrD/REP helicase N-terminal domain
3444446545447Rhodanese-like domain
2222221122220Universal stress protein family
3728373036342436303834364Acetyltransferase (GNAT) family
111111121111SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
2222222222222AIR synthase related protein, N-terminal domain
6666766966670tRNA synthetase class II core domain (G, H, P, S and T)
134Phage integrase family
2222322323225Tetrapyrrole (Corrin/Porphyrin) Methylases
1111111211112Glycosyl transferase family, a/b domain
21211310Class II Aldolase and Adducin N-terminal domain
4333232433333Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5544652636551Fes/CIP4, and EFC/F-BAR homology domain
3334434334337IQ calmodulin-binding motif
2222222222222Phosphoinositide 3-kinase family, accessory domain (PIK domain)
4653534443445Phospholipase D Active site motif
1211111121214Regulator of G protein signaling domain
4344444454545GTPase-activator protein for Ras-like GTPase
57776665656