PFAM Domains • Scheffersomyces coipomoensis NRRL Y-17651T v1.0
Annotations/GenomesCanalb1Canta1Cante1Clalu1_2Debha1Lodelo1Metbi1Metfru2Meygui1Picst3Schcoi1Schque1Spaarb1Spapa3TotalAnnotation Description
PFAMs
6,6375,1425,0504,9945,5366,0974,8898,3126,5334,5716,7216,6566,4305,25982,827
3233343233333450312834323333472ATPase family associated with various cellular activities (AAA)
2625242730302243323135343131421ABC transporter
4444444844444460ATP synthase alpha/beta family, nucleotide-binding domain
1414131414131417131415141414197Elongation factor Tu GTP binding domain
998887712879898117Helix-loop-helix DNA-binding domain
111126Hsp20/alpha crystallin family
9999999131212167109142Hsp70 protein
5679847658567891KH domain
11114SH2 domain
1723192022172320192214151419264SH3 domain
10119101010111411811101010145Actin
215131716213241423116120Ankyrin repeat
7667766977776795ADP-ribosylation factor family
13128887922159661614153Eukaryotic aspartyl protease
3433324534333346Cyclic nucleotide-binding domain
1113Cytochrome b(C-terminal)/b6/petD
1111111111111114Cytochrome c
2211211111124323Double-stranded RNA binding motif
109101210131175EF hand
11122111111134Fe-4S binding domain
2111117Fibronectin type III domain
4212321232226840Globin
104645839421085684Glutathione S-transferase, C-terminal domain
1122111224221123Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
3433323223331540Homeodomain
3333333333333342lactate/malate dehydrogenase, NAD binding domain
323332433221334Myosin head (motor domain)
1091189961491081299133Cytochrome P450
959589931009595111949511311295931,375Protein kinase domain
1057887710988875107Pyridine nucleotide-disulphide oxidoreductase
2120202120212131212321212120302Ras family
7767687776676895Response regulator receiver domain
311112141522125RNase H
3945404146384148414738423746589RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Retroviral aspartyl protease
71244137Reverse transcriptase (RNA-dependent DNA polymerase)
43333221033444351Copper/zinc superoxide dismutase (SODC)
2211211222222224Iron/manganese superoxide dismutases, alpha-hairpin domain
54444447447661275Subtilase family
3124392558292045576043433825537Sugar (and other) transporter
998991091810999108136Thioredoxin
1111116Trypsin
3333333333333342Tubulin/FtsZ family, GTPase domain
1338383238103613184915151833366Zinc finger, C2H2 type
331283130128622422233223Zinc finger, C3HC4 type (RING finger)
4424892535222759Zinc knuckle
3343333332434445Protein-tyrosine phosphatase
2022422133171722363142352433395short chain dehydrogenase
2117171731162026212426232018297Zinc-binding dehydrogenase
4222432634554450Thiolase, N-terminal domain
2222222222222228Beta-ketoacyl synthase, N-terminal domain
1333313131113272Fe-2S iron-sulfur cluster binding domain
1111211111221117Enolase, C-terminal TIM barrel domain
11327Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
877788710878888109Glutamine amidotransferase class-I
109101010121013101010101010144TCP-1/cpn60 chaperonin family
112ATP synthase A chain
1111111411111117Glutamine synthetase, catalytic domain
1111111111111114Triosephosphate isomerase
15101099131016131115151310169E1-E2 ATPase
11111181110912101111111111148Core histone H2A/H2B/H3/H4
3333322546333346Alpha amylase, catalytic domain
1111111111111114Phorbol esters/diacylglycerol binding domain (C1 domain)
65556441055666881Bacterial transferase hexapeptide (six repeats)
5333363957555365tRNA synthetases class I (I, L, M and V)
1211101311111120141111111112169Cyclin, N-terminal domain
112Carboxylesterase family
4445444444444457DNA polymerase family B
33323334331143351ATP synthase subunit C
21112222221220Peroxidase
1111411112111118Beta-lactamase
112NADH dehydrogenase
1918191820191826191820181818268Calcineurin-like phosphoesterase
4352543854665363Cellulase (glycosyl hydrolase family 5)
66666661166666689tRNA synthetases class II (D, K and N)
3334333135333357323433333233486Mitochondrial carrier protein
1514151415131322161015151213202Aminotransferase class I and II
4888848558444886Phosphoribosyl transferase domain
696811688989998114Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111111111114Phosphoglycerate kinase
2221222212222226Ribosomal protein S4/S9 N-terminal domain
2222222222222228Ribosomal protein S12/S23
11215Bacterial regulatory helix-turn-helix proteins, AraC family
11111211111113Chaperonin 10 Kd subunit
710109981010899979124C2 domain
1014131515713710159101212162PH domain
66657751295667592bZIP transcription factor
119109121291614101010109151Aldehyde dehydrogenase family
7866866690545527908585936459998Fungal Zn(2)-Cys(6) binuclear cluster domain
1214161514121418141412131313194Cytochrome b5-like Heme/Steroid binding domain
976787612879877108Oxidoreductase NAD-binding domain
1718181819161825181818181817256SNF2 family N-terminal domain
2222222222221227Ribosomal protein S7p/S5e
1313131213131322121316141313193Ubiquitin-conjugating enzyme
6665666976666687Isocitrate/isopropylmalate dehydrogenase
2331323313333336Ribosomal Proteins L2, RNA binding domain
1111111111111114Hsp90 protein
2222322322222230Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111111111114Dihydrofolate reductase
11114Chitin recognition protein
5443552453446963Cysteine-rich secretory protein family
1111111411111117Ribosomal protein S3, C-terminal domain
22222223221222282-oxoacid dehydrogenases acyltransferase (catalytic domain)
1222211121111119Catalase
1111116UDP-glucoronosyl and UDP-glucosyl transferase
6476845667664580Aminotransferase class-III
2222221622222231Ribosomal protein S19
1111111111111114DNA gyrase B
3433432633334347Thiamine pyrophosphate enzyme, central domain
4433443664444457Lyase
2222222422222230Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111111111111114Adenylate and Guanylate cyclase catalytic domain
1111111211111115ATP synthase delta (OSCP) subunit
1111111111111114Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111111111114Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
1111111311111116Pyruvate kinase, barrel domain
6666656956666685Kinesin motor domain
2323212324212430232423232523330DnaJ domain
1414141314141325141414141414205Proteasome subunit
1111111211112Major intrinsic protein
1111111111111114ATP synthase
112Glycosyl hydrolase family 1
11111112111111153'5'-cyclic nucleotide phosphodiesterase
1111111111111114Profilin
2221221321222125Ribosomal protein L22p/L17e
2121222222121224Ribosomal protein L14p/L23e
8778877486667796Ubiquitin family
44424241033444456Cofilin/tropomyosin-type actin-binding protein
111111111111111414-3-3 protein
2121221112231122Alkaline phosphatase
1111111111111114Zinc carboxypeptidase
1513171014111022201719201518221Aldo/keto reductase family
613101211712761275912129Myb-like DNA-binding domain
3333333333234443Forkhead domain
112Glycosyl hydrolases family 32 N-terminal domain
2111121221223122Ribosomal protein L16p/L10e
2222222121222226Ribosomal protein S14p/S29e
3322333323333339FKBP-type peptidyl-prolyl cis-trans isomerase
4221222422222231Glutathione peroxidase
11111117
4788746848454683Flavodoxin
1111111111111114Calreticulin family
5455654863557472Aminotransferase class-V
2111111111111115Ribonucleotide reductase, small chain
4131273134393245373735353531490DEAD/DEAH box helicase
5959495761585477595656555759816Helicase conserved C-terminal domain
11111111111112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222522222231Ribosomal protein L23
1111111211111115Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111111311111116Ribosomal protein L5
3333332333333341Pyridoxal-dependent decarboxylase conserved domain
1111111111111114Citrate synthase, C-terminal domain
5555545554554567GHMP kinases N terminal domain
5565555675665576Biotin carboxylase, N-terminal domain
1111111111111114Tryptophan synthase alpha chain
888998812888888118Pyridoxal-phosphate dependent enzyme
888888815887788117NUDIX domain
4343353832444454pfkB family carbohydrate kinase
2212310Luciferase-like monooxygenase
2222222222222228Ribosomal protein L3
2222222322222229Ribosomal protein L11, RNA binding domain
161615111415121214814141515191Histidine phosphatase superfamily (branch 1)
1111111311111116Thymidylate synthase
4444444844444460ATP synthase alpha/beta chain, C terminal domain
4555525435443458Calponin homology (CH) domain
3555525324333553Glutamine amidotransferases class-II
2221222412222228Ribosomal protein S15
111111141111116Fructose-1-6-bisphosphatase, N-terminal domain
2222222222223229Ribonucleotide reductase, all-alpha domain
2222222222222228Ribosomal protein S2
2232222222742135SRF-type transcription factor (DNA-binding and dimerisation domain)
89889876798988112GATA zinc finger
2331303434222637263624222229396Amino acid permease
2222222322221228Prolyl oligopeptidase family
3333332622333342Ribosomal protein L30p/L7e
4433443323655554Histidine phosphatase superfamily (branch 2)
1111111111111114Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4444444645454460Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
4432333332343444Glycosyl hydrolases family 17
2222222322222229Ribosomal protein S5, N-terminal domain
1111111111111114Nucleoside diphosphate kinase
2111121221222121Ribosomal protein S10p/S20e
5333253542554251Arrestin (or S-antigen), N-terminal domain
1111111211111115Phosphoglucose isomerase
1111121111111115Carbohydrate phosphorylase
2222222422122229SecY translocase
1111111111111114Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222422222230Ribosomal protein L6
3233333533333343Polyprenyl synthetase
4333333533333345Hexokinase
4333343643444351Dynamin family
1111111111111114Transcription factor TFIID (or TATA-binding protein, TBP)
2222222322221127Rieske [2Fe-2S] domain
1274115Proton-conducting membrane transporter
6676666666666685Biotin-requiring enzyme
2222222322222229Phosphofructokinase
222212312222225Ribosomal protein S17
1111111311111116Hydroxymethylglutaryl-coenzyme A reductase
3433333343333243FGGY family of carbohydrate kinases, N-terminal domain
4333423423334445Enoyl-CoA hydratase/isomerase
2221222212222226Ribosomal protein S9/S16
3222222222443335Transcription factor TFIIB repeat
6665666946666684Cytidine and deoxycytidylate deaminase zinc-binding region
1111111211111115Molybdopterin oxidoreductase
2222222521222230Chromo (CHRromatin Organisation MOdifier) domain
1111111111111114Phosphatidylinositol-specific phospholipase C, Y domain
3212121222222125Phosphatidylinositol-specific phospholipase C, X domain
9564654554556675D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1111121111111115Malic enzyme, N-terminal domain
11111112111111156-phosphogluconate dehydrogenase, C-terminal domain
5333333332223240Multicopper oxidase
6654665757666681WW domain
2222222222222228Ribosomal RNA adenine dimethylase
22221122115Yeast PIR protein repeat
839585869280871108584888786891,237WD domain, G-beta repeat
4444443535444456Heavy-metal-associated domain
3333333433332342Adenylate kinase
2222222332333233Phosphoglucomutase/phosphomannomutase, C-terminal domain
3232222522333236Ribosomal protein S8
111111311221117Ribosomal protein S11
3323333533432242LIM domain
2111121131223122Regulator of chromosome condensation (RCC1) repeat
2222222222222228Ribosomal protein S13/S18
22NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2222222222222228chorismate binding enzyme
555455574555557060s Acidic ribosomal protein
4444434534233451Prenyltransferase and squalene oxidase repeat
4577747344444670Protein kinase C terminal domain
1111111211111115Single-strand binding protein family
11Type II/IV secretion system protein
1111111111111114S-adenosylmethionine synthetase, N-terminal domain
999998912899998126Bromodomain
2122322513222231Acyl-CoA dehydrogenase, C-terminal domain
1415141415131418151614151515207Ubiquitin carboxyl-terminal hydrolase
111111131111115Ribosomal protein L36
3222132512221129Ribonuclease T2 family
4444444444444254HSF-type DNA-binding
2222222222222228SRP54-type protein, GTPase domain
4453354334443352Serine carboxypeptidase
89788689888788110Phosphatidylinositol 3- and 4-kinase
1131311222111121Transketolase, thiamine diphosphate binding domain
2111211311221120Inositol monophosphatase family
6543674544676774Glutaredoxin
1121112111111116Isocitrate lyase family
2222122222222227Serine hydroxymethyltransferase
3222222432223233Ribosomal protein L10
3324344436334450KOW motif
11111211111113Ribosomal protein L34
3222332433332338RF-1 domain
6362442346554357Sodium:solute symporter family
111111121111114Imidazoleglycerol-phosphate dehydratase
1111111111111114DNA polymerase family A
1112111121111116IMP dehydrogenase / GMP reductase domain
1111111111111114Glucose-6-phosphate dehydrogenase, NAD binding domain
11ROK family
6766666766666686Protein phosphatase 2C
4222332422443340Nucleotidyl transferase
2221111112223223Carbonic anhydrase
2222242552322237Phosphoribulokinase / Uridine kinase family
6667666866665686Fatty acid desaturase
6444364644644463MutS domain V
111111111111113Delta-aminolevulinic acid dehydratase
3333423753233347Arginase family
6666676966666688MCM P-loop domain
2111121121222120Squalene/phytoene synthase
98888978668798109FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
109971112811910991010134AMP-binding enzyme
2222223222222229G-protein alpha subunit
4553545635444461HMG (high mobility group) box
55NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
3323243432232238His Kinase A (phospho-acceptor) domain
2222222522121229Armadillo/beta-catenin-like repeat
101410181991511111413131217186Tetratricopeptide repeat
112Papillomavirus helicase
1111221113111219Ion transport protein
1112111111