PFAM Domains • Mycena capillaripes Frankland 9286 v1.0
Annotations/GenomesFishe1Mycgal1Mycrub1Panst_KUC8834_1_1Panst_LUM_1_1Schco3TotalAnnotation Description
PFAMs
7,10521,25518,1758,99311,4898,59075,607
117 transmembrane receptor (rhodopsin family)
417764515443330ATPase family associated with various cellular activities (AAA)
42115124535646436ABC transporter
64545428ATP synthase alpha/beta family, nucleotide-binding domain
213EGF-like domain
172022172115112Elongation factor Tu GTP binding domain
11231814151394Helix-loop-helix DNA-binding domain
51010119954Hsp20/alpha crystallin family
10132188767Hsp70 protein
88888949KH domain
3115SH2 domain
243324291727154SH3 domain
11222113191197Actin
2616085421060383Ankyrin repeat
347PAN domain
71415810761ADP-ribosylation factor family
2011991333426323Eukaryotic aspartyl protease
34334320Cyclic nucleotide-binding domain
22Cytochrome b/b6/petB
23223113Cytochrome c
10138751356Double-stranded RNA binding motif
15331712059EF hand
13154Fe-4S binding domain
111115Fibronectin type III domain
11Globin
85440131015140Glutathione S-transferase, C-terminal domain
2121118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
213Hemopexin
7131311111166Homeodomain
112Laminin EGF domain
22222212lactate/malate dehydrogenase, NAD binding domain
59556636Myosin head (motor domain)
915444591251501141,483Cytochrome P450
1674553431852101621,522Protein kinase domain
142119191611100Pyridine nucleotide-disulphide oxidoreductase
278970313527279Ras family
824161091279Response regulator receiver domain
4846282910161RNase H
708062675870407RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11114Copper/zinc superoxide dismutase (SODC)
23233316Iron/manganese superoxide dismutases, alpha-hairpin domain
577665273183Subtilase family
419471394541331Sugar (and other) transporter
8161613151381Thioredoxin
6101077545Tubulin/FtsZ family, GTPase domain
313310von Willebrand factor type A domain
3941506835100333Zinc finger, C2H2 type
48206711171227Zinc finger, C3HC4 type (RING finger)
182921171122118Zinc knuckle
23322214Protein-tyrosine phosphatase
68279264123144112990short chain dehydrogenase
3610593525647389Zinc-binding dehydrogenase
45444425Thiolase, N-terminal domain
33811810373Beta-ketoacyl synthase, N-terminal domain
32223122Fe-2S iron-sulfur cluster binding domain
1211117Enolase, C-terminal TIM barrel domain
713889853Glutamine amidotransferase class-I
15101111111068TCP-1/cpn60 chaperonin family
11ATP synthase A chain
35657329Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
10272018199103E1-E2 ATPase
154938192022163Core histone H2A/H2B/H3/H4
123Copper binding proteins, plastocyanin/azurin family
17151713141288Alpha amylase, catalytic domain
45474529Phorbol esters/diacylglycerol binding domain (C1 domain)
46442424Bacterial transferase hexapeptide (six repeats)
34534322tRNA synthetases class I (I, L, M and V)
17161623141399Cyclin, N-terminal domain
20117115444926371Carboxylesterase family
24444422DNA polymerase family B
33334319ATP synthase subunit C
1689112142188Peroxidase
14835883103Beta-lactamase
48544631C-5 cytosine-specific DNA methylase
254639373324204Calcineurin-like phosphoesterase
7382916226118Cellulase (glycosyl hydrolase family 5)
56665634tRNA synthetases class II (D, K and N)
364647404437250Mitochondrial carrier protein
122821172116115Aminotransferase class I and II
64353728Phosphoribosyl transferase domain
15221413131491Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
2111117Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1111217Chaperonin 10 Kd subunit
123625161418121C2 domain
2010132261990PH domain
6141558654bZIP transcription factor
125622171816141Aldehyde dehydrogenase family
5621017613711888785Fungal Zn(2)-Cys(6) binuclear cluster domain
212528242325146Cytochrome b5-like Heme/Steroid binding domain
141118Oxidoreductase molybdopterin binding domain
5151310111165Oxidoreductase NAD-binding domain
203027273022156SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
213831232221156Ubiquitin-conjugating enzyme
66676536Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
22222313Hsp90 protein
23222213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1211117Dihydrofolate reductase
531110Chitin recognition protein
35622523Cysteine-rich secretory protein family
1131118Ribosomal protein S3, C-terminal domain
111668344Cupin
21115Annexin
44Eukaryotic-type carbonic anhydrase
631111Chalcone and stilbene synthases, N-terminal domain
443333202-oxoacid dehydrogenases acyltransferase (catalytic domain)
26534222Catalase
1111116Disintegrin
6161915148UDP-glucoronosyl and UDP-glucosyl transferase
8108710548Aminotransferase class-III
22422214Ribosomal protein S19
1111116DNA gyrase B
37744429Thiamine pyrophosphate enzyme, central domain
33433319Lyase
32622217Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
13323113Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1121128Indole-3-glycerol phosphate synthase
13355219Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
10111212101065Kinesin motor domain
273535292930185DnaJ domain
15181616181497Proteasome subunit
110767334Major intrinsic protein
1111116ATP synthase
15335320Glycosyl hydrolase family 1
12111173'5'-cyclic nucleotide phosphodiesterase
111115Profilin
13212110Ribosomal protein L22p/L17e
26222216Ribosomal protein L14p/L23e
162023151713104Ubiquitin family
57555734Cofilin/tropomyosin-type actin-binding protein
3321121214-3-3 protein
1236Alkaline phosphatase
23132213Zinc carboxypeptidase
45110109606060444Aldo/keto reductase family
16771461161Myb-like DNA-binding domain
511769846Forkhead domain
111126Glycosyl hydrolases family 32 N-terminal domain
1221219Ribosomal protein L16p/L10e
22223213Ribosomal protein S14p/S29e
43333521FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
1124
611877746Flavodoxin
22Tropomyosin
1111116Calreticulin family
171023124Common central domain of tyrosinase
6141378957Aminotransferase class-V
420222333Ribonucleotide reductase, small chain
55155107607266515DEAD/DEAH box helicase
84173120989397665Helicase conserved C-terminal domain
15111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
12223111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111115Ribosomal protein L5
46867738Pyridoxal-dependent decarboxylase conserved domain
44735326Citrate synthase, C-terminal domain
66556533GHMP kinases N terminal domain
59766538Biotin carboxylase, N-terminal domain
2111117Tryptophan synthase alpha chain
713131010861Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
17171413131488NUDIX domain
55566633pfkB family carbohydrate kinase
6292589380Glycosyl hydrolases family 28
24222315Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
8111087953Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
65545429ATP synthase alpha/beta chain, C terminal domain
56577535Calponin homology (CH) domain
43252521Glutamine amidotransferases class-II
22222212Ribosomal protein S15
52718691176Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
16356122Ribonucleotide reductase, all-alpha domain
22522215Ribosomal protein S2
23434420SRF-type transcription factor (DNA-binding and dimerisation domain)
155242273112179GATA zinc finger
24131624921107Amino acid permease
51414811759Prolyl oligopeptidase family
32212111Ribosomal protein L30p/L7e
814141311969Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
45556429Aconitase family (aconitate hydratase)
210754533Glycosyl hydrolase family 10
21222211Glycosyl hydrolases family 17
22221211Ribosomal protein S5, N-terminal domain
12222211Nucleoside diphosphate kinase
16756126Tetraspanin family
22Galactoside-binding lectin
22422214Ribosomal protein S10p/S20e
2201895559Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
24112111Carbohydrate phosphorylase
1111217SecY translocase
1111127Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22221211Ribosomal protein L6
3131033638Polyprenyl synthetase
24623219Hexokinase
6211459964Dynamin family
1112117Transcription factor TFIID (or TATA-binding protein, TBP)
35643223Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
2114Phytochrome region
710888950Biotin-requiring enzyme
1111116Phosphofructokinase
22222212Ribosomal protein S17
1211117Hydroxymethylglutaryl-coenzyme A reductase
33333318FGGY family of carbohydrate kinases, N-terminal domain
71720911973Enoyl-CoA hydratase/isomerase
11Insect cuticle protein
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
681088646Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
1019121772994Chromo (CHRromatin Organisation MOdifier) domain
33333419Phosphatidylinositol-specific phospholipase C, Y domain
47634327Phosphatidylinositol-specific phospholipase C, X domain
681075743D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
32222314Malic enzyme, N-terminal domain
11211286-phosphogluconate dehydrogenase, C-terminal domain
6384411126117Multicopper oxidase
7107109952WW domain
22222212Ribosomal RNA adenine dimethylase
116182214125133132902WD domain, G-beta repeat
34422419Heavy-metal-associated domain
33333318Adenylate kinase
23323114Phosphoglucomutase/phosphomannomutase, C-terminal domain
12213110Ribosomal protein S8
22233113Ribosomal protein S11
66766637LIM domain
46633325Regulator of chromosome condensation (RCC1) repeat
32222213Ribosomal protein S13/S18
22222212chorismate binding enzyme
4344532360s Acidic ribosomal protein
55756432Prenyltransferase and squalene oxidase repeat
66585737Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
9241611101181Bromodomain
613131113965Acyl-CoA dehydrogenase, C-terminal domain
141921212017112Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
111655129Ribonuclease T2 family
47744430HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111127Urease alpha-subunit, N-terminal domain
64464232810175Serine carboxypeptidase
991099854Phosphatidylinositol 3- and 4-kinase
22222313Transketolase, thiamine diphosphate binding domain
9756128Glycosyl hydrolases family 11
11114WHEP-TRS domain
23422720Inositol monophosphatase family
47647533Glutaredoxin
62252320Isocitrate lyase family
1111217Serine hydroxymethyltransferase
37645429Iron-containing alcohol dehydrogenase
13222212Ribosomal protein L10
55756533KOW motif
111115Ribosomal protein L34
1113Ribosomal protein L33
23323316RF-1 domain
1434113Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
111115DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
12222211Glucose-6-phosphate dehydrogenase, NAD binding domain
12141916161390Protein phosphatase 2C
33323115Nucleotidyl transferase
212933231Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
12162113151390Fatty acid desaturase
66667637MutS domain V
1111116Delta-aminolevulinic acid dehydratase
45844429Arginase family
69667640MCM P-loop domain
13212110Squalene/phytoene synthase
11281916179100FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
2811382434931346AMP-binding enzyme
156842292915198G-protein alpha subunit
172526212035144HMG (high mobility group) box
414866947His Kinase A (phospho-acceptor) domain
35755429Armadillo/beta-catenin-like repeat
242418301627139Tetratricopeptide repeat
46435325Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
101091291060BRCA1 C Terminus (BRCT) domain
8161187757Glycosyl transferases group 1
54543425Glycosyl transferase family 2
22221312SAM domain (Sterile alpha motif)
34653324linker histone H1 and H5 family
111115Ribosomal protein L7/L12 C-terminal domain
76417Pectate lyase
11235214ribonuclease
1111127Urease, gamma subunit
34345322CoA-ligase
731218111694Phosphopantetheine attachment site
22212211Formyl transferase
11161410111173Metallopeptidase family M24
1551231651Leucine Rich Repeat
254939531951236alpha/beta hydrolase fold
34323318RNA polymerase Rpb2, domain 6
411945538PB1 domain
22222212Staphylococcal nuclease homologue
10141310131171Rab-GTPase-TBC domain
1111116Tudor domain
12312110WH1 domain
36834327Zinc finger, ZZ type
111115HRDC domain
10119108957CBS domain
22222212Ribosomal protein L13
23222213Ribosomal protein L4/L1 family
1111116Clp protease
54543425S1 RNA binding domain
1111116HIUase/Transthyretin family
45856836AhpC/TSA family
54544426tRNA synthetases class I (W and Y)
23312112UvrD/REP helicase N-terminal domain
5812410443Rhodanese-like domain
22222212Universal stress protein family
287052382530243Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
612664640tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
23222213Tetrapyrrole (Corrin/Porphyrin) Methylases
1111127Glycosyl transferase family, a/b domain
11PDZ domain
1141044235Class II Aldolase and Adducin N-terminal domain
34443422Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
36656632Fes/CIP4, and EFC/F-BAR homology domain
33353421IQ calmodulin-binding motif
32222213Phosphoinositide 3-kinase family, accessory domain (PIK domain)
32242316Phospholipase D Active site motif
14513115Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
8151477657RasGEF domain
7101177648RasGEF N-terminal motif
11161313111377RhoGAP domain
142322141613102RhoGEF domain
43345423SPRY domain
35333320RNA polymerase Rpb1, domain 2
111115Guanylate kinase
44655327Gelsolin repeat
75695941UBA/TS-N domain
14151620181598PHD-finger
12212210GGL domain
59555635HECT-domain (ubiquitin-transferase)
1124Helix-hairpin-helix motif
2121129MSP (Major sperm protein) domain
63553628Ribonuclease III domain
29524224Region in Clathrin and VPS
15544423RanBP1 domain
21233213PPIC-type PPIASE domain
22242416Zn-finger in Ran binding protein and others
201516252128125Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111418B-box zinc finger
3811551042Poly(ADP-ribose) polymerase catalytic domain
23222213Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
70475211321264567F-box domain
1211117Elongation factor 1 gamma, conserved domain
27744226Calpain family cysteine protease
23322315Copper fist DNA binding domain
6911811550CRAL/TRIO domain
8135133284821373BTB/POZ domain
2364416129119Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
33334319Voltage gated chloride channel
55340131411136Caspase domain
1151797857GDSL-like Lipase/Acylhydrolase
13222212Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
206770312724239ABC transporter transmembrane region
312957339FAD binding domain
43651726Condensation domain
1311118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
14211110HAMP domain
29322220ribosomal L5P family C-terminus
54565530Insulinase (Peptidase family M16)
105443430Dehydrogenase E1 component
111115Lumazine binding domain
8111178752Elongation factor G C-terminus
48744431HMGL-like
44444424DnaJ central domain
75544126Starch binding domain
33323216Ribosomal protein L1p/L10e family
38768436Cation transporting ATPase, C-terminus
5111088547Cation transporter/ATPase, N-terminus
1112218dUTPase
45556429Aconitase C-terminal domain
44354323Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
4378911473Acyl transferase domain
1111127Urease beta subunit
23343217Dihydrodipicolinate synthetase family
232016361530140haloacid dehalogenase-like hydrolase
12522315Glycosyl hydrolases family 2
133831121614124Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
1113Translation initiation factor IF-3, C-terminal domain
112Acylphosphatase
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
25333218Peptidase S24-like
12222110Inorganic pyrophosphatase
42718510569Glycosyl hydrolases family 16
33433319Glycosyl hydrolases family 15
125748232522187NADH:flavin oxidoreductase / NADH oxidase family
153111123-hydroxyacyl-CoA dehydrogenase, C-terminal domain
34446526Glycosyl hydrolase family 20, catalytic domain
75654532HhH-GPD superfamily base excision DNA repair protein
1211117AIR carboxylase
12141116222823342GMC oxidoreductase
224732240Asparagine synthase
534624325160Fungal cellulose binding domain
8891111754Septin
16111111EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
31915317259Flavin-binding monooxygenase-like
43333319tRNA synthetases class I (E and Q), catalytic domain
2211118tRNA synthetases class I (R)
521768754XPG N-terminal domain
8384016913124Metallo-beta-lactamase superfamily
1113F5/8 type C domain
45456529Choline/Carnitine o-acyltransferase
1111116Putative esterase
111115Glycosyl hydrolase family 9
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1211117Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
24633725Dioxygenase
4121269649CNH domain
23333216Diacylglycerol kinase catalytic domain
132726131812109Dual specificity phosphatase, catalytic domain
111115MyTH4 domain
46534426P21-Rho-binding domain
15201615151596PX domain
23434218Ras association (RalGDS/AF-6) domain
414554436UBX domain
58546533VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
412977443Carbon-nitrogen hydrolase
1433415N-acetyltransferase
111115Prephenate dehydratase
45454325Syntaxin
610556537Pumilio-family RNA binding repeat
68788542Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
16224116ER lumen protein retaining receptor
22222212Glycoprotease family
1111116Histidinol dehydrogenase
33333318impB/mucB/samB family
2114
1111116Ribosomal L15
13413113Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111217Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
1111116Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
412985240Glycosyl hydrolase family 7
235Ring hydroxylating alpha subunit (catalytic domain)
22222313RNA pseudouridylate synthase
117776745Histone deacetylase domain
171333330POT family
21421212PWWP domain
184943202427181SET domain
419181011567Isochorismatase family
12322212Permease family
111115Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
54511914892XPG I-region
112116Acetokinase family
1111116DNA photolyase
112Cation-independent mannose-6-phosphate receptor repeat
11Defensin propeptide
246Nitroreductase family
1111127Cytosol aminopeptidase family, catalytic domain
32511214Sulfatase
11131186,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
34333319Acyl CoA binding protein
6172266663Cullin family
1111116Elongation factor TS
581264439FAD binding domain
1447246710108O-methyltransferase domain
36545427EamA-like transporter family
2327
7191088759ThiF family
1111217Ribosomal family S4e
12321110Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
22Hepatitis core antigen
25433320Ammonium Transporter Family
58934433Sulfate permease family
1311118MATH domain
23333216Dehydratase family
35656328Transaldolase/Fructose-6-phosphate aldolase
13333316Mechanosensitive ion channel
1221219GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
56644429Adaptor complexes medium subunit family
12877640Exonuclease
1111116Dipeptidyl peptidase IV (DPP IV) N-terminal region
2524618307NB-ARC domain
132929182512126Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
11125Sodium:sulfate symporter transmembrane region
1411119DNA-dependent RNA polymerase
112FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
22222313Nucleosome assembly protein (NAP)
48544429Synaptobrevin
1311118GMP synthase C terminal domain
34119Phage lysozyme
33633422Adenosine/AMP deaminase
33444826Oxidoreductase FAD-binding domain
12511210150Thioesterase domain
22222212Histidine biosynthesis protein
37333322Glycosyltransferase family 20
1211218UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
11114PAS fold
12222211Probable molybdopterin binding domain
44444424Sec1 family
23222112GDP dissociation inhibitor
68787642Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
44444323Initiation factor 2 subunit family
1113PQQ enzyme repeat
22222212Electron transfer flavoprotein domain
122117Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
43322418Gamma-glutamyltranspeptidase
22Ribosomal L40e family
1111116GrpE
34423218TatD related DNase
15812118Inhibitor of apoptosis-promoting Bax1
1211