PFAM Domains • Zychaea mexicana RSA 1403 v1.0
Annotations/GenomesAbsrep1Bacci1Blatri1Liccor1Lichy1Mucci2Parpar1Phybl2Rhimi1_1Synrac1Umbra1Zycmex1TotalAnnotation Description
PFAMs
14,49913,47810,52412,79910,4669,58411,3919,2168,62610,7988,51511,732131,628
2111277 transmembrane receptor (Secretin family)
452314333334387 transmembrane sweet-taste receptor of 3 GCPR
595340424544424838464046543ATPase family associated with various cellular activities (AAA)
546740566052464834373547576ABC transporter
1612810599127875108ATP synthase alpha/beta family, nucleotide-binding domain
1124EGF-like domain
332520221917192118211821254Elongation factor Tu GTP binding domain
707537475137443539333137536Helix-loop-helix DNA-binding domain
1443273732238Hsp20/alpha crystallin family
27191417141120121014914181Hsp70 protein
20199111514111213121311160KH domain
111115SH2 domain
558932456541353748344531557SH3 domain
131612111211141111111011143Actin
157114105142937456649373Ankyrin repeat
1315891112101091099125ADP-ribosylation factor family
313519312727213320232325315Eukaryotic aspartyl protease
107789767776788Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
134Cytochrome b/b6/petB
42123111221222Cytochrome c
21123111122118Double-stranded RNA binding motif
254264443135331343258EF hand
112111184Fe-4S binding domain
221211111113Fibronectin type III domain
14122221116Globin
92038121387115158119Glutathione S-transferase, C-terminal domain
46312333341336Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
325521263727232829201823339Homeodomain
68356555353660lactate/malate dehydrogenase, NAD binding domain
22Lectin C-type domain
18211516151717161612812183Myosin head (motor domain)
438532756441345435504990652Cytochrome P450
3233582212912772372342202102131652242,973Protein kinase domain
172313201918171615141620208Pyridine nucleotide-disulphide oxidoreductase
698250585960605451513952685Ras family
263018393315181817192023276Response regulator receiver domain
2112241114RNase H
11513785106109889197968395911,193RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
88Retroviral aspartyl protease
65113373Reverse transcriptase (RNA-dependent DNA polymerase)
45513332332539Copper/zinc superoxide dismutase (SODC)
2111211111113Iron/manganese superoxide dismutases, alpha-hairpin domain
233122201916162415171124238Subtilase family
416630424647342822444747494Sugar (and other) transporter
211816161415151316181313188Thioredoxin
11Thyroglobulin type-1 repeat
11Trefoil (P-type) domain
65115422326239Trypsin
1113311138898469103Tubulin/FtsZ family, GTPase domain
43174274312714029203873769231,002Zinc finger, C2H2 type
4961067064455607625443Zinc finger, C3HC4 type (RING finger)
18182738214517702381916320Zinc knuckle
57563665553662Protein-tyrosine phosphatase
334935404545343327397150501short chain dehydrogenase
234625322829192323313437350Zinc-binding dehydrogenase
996961085586889Thiolase, N-terminal domain
33222332222228Beta-ketoacyl synthase, N-terminal domain
2514444121282Fe-2S iron-sulfur cluster binding domain
23233222221226Enolase, C-terminal TIM barrel domain
213Cytochrome C and Quinol oxidase polypeptide I
2114Cytochrome C oxidase subunit II, periplasmic domain
141310141199109989125Glutamine amidotransferase class-I
221512131311111511111111156TCP-1/cpn60 chaperonin family
213ATP synthase A chain
89567556544670Glutamine synthetase, catalytic domain
22121111111115Triosephosphate isomerase
494933322630402626302534400E1-E2 ATPase
20211425241414201414916205Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
12133111126224Alpha amylase, catalytic domain
1417101414411711121011135Phorbol esters/diacylglycerol binding domain (C1 domain)
1186788758710691Bacterial transferase hexapeptide (six repeats)
76664474464664tRNA synthetases class I (I, L, M and V)
181815182118191820131614208Cyclin, N-terminal domain
22321126120Carboxylesterase family
55544554455455DNA polymerase family B
58343544434350ATP synthase subunit C
111111111110Legume lectin domain
34322442332234Peroxidase
1124Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
11431114218Beta-lactamase
21233214122326C-5 cytosine-specific DNA methylase
12115NADH dehydrogenase
424930353937363433372935436Calcineurin-like phosphoesterase
105555344458664Cellulase (glycosyl hydrolase family 5)
88576666666676tRNA synthetases class II (D, K and N)
748056616663615452534553718Mitochondrial carrier protein
242717192120202018201520241Aminotransferase class I and II
71446131371110596105Phosphoribosyl transferase domain
141514131515151416131111166Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11122211121116Phosphoglycerate kinase
53334333333238Ribosomal protein S4/S9 N-terminal domain
84454444433350Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
2121222111116Chaperonin 10 Kd subunit
243617263223192220171922277C2 domain
668532467944354853364541610PH domain
384831363228311926271325354bZIP transcription factor
212014222515151212181322209Aldehyde dehydrogenase family
889243778046574752566051749Fungal Zn(2)-Cys(6) binuclear cluster domain
416031334241343937293032449Cytochrome b5-like Heme/Steroid binding domain
12243221122325Oxidoreductase molybdopterin binding domain
151914131716141313141412174Oxidoreductase NAD-binding domain
292621232420242022232123276SNF2 family N-terminal domain
54435443333243Ribosomal protein S7p/S5e
322618232322222022182020266Ubiquitin-conjugating enzyme
9117910878776897Isocitrate/isopropylmalate dehydrogenase
66434544444351Ribosomal Proteins L2, RNA binding domain
45445444453450Hsp90 protein
54212326222233Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
22222222212223Dihydrofolate reductase
34438631233242Cysteine-rich secretory protein family
65444554332348Ribosomal protein S3, C-terminal domain
565456544343542-oxoacid dehydrogenases acyltransferase (catalytic domain)
37533442333343Catalase
46332332223336Disintegrin
82010851091725893UDP-glucoronosyl and UDP-glucosyl transferase
68645666565669Aminotransferase class-III
57544444343350Ribosomal protein S19
11111111111112DNA gyrase B
47422653333244Thiamine pyrophosphate enzyme, central domain
64444444364552Lyase
55223333333439Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
21222222224225Ferritin-like domain
34243222221128Adenylate and Guanylate cyclase catalytic domain
22112111111115ATP synthase delta (OSCP) subunit
11111111111112Orotidine 5'-phosphate decarboxylase / HUMPS family
22121111111115Indole-3-glycerol phosphate synthase
54344333332340Pyruvate kinase, barrel domain
413626332928292028221824334Kinesin motor domain
464532363539423437323031439DnaJ domain
241714141414141414141314180Proteasome subunit
31222222124225Major intrinsic protein
222122211116ATP synthase
22Glycosyl hydrolase family 1
121261188766535893'5'-cyclic nucleotide phosphodiesterase
1111111211112Profilin
55444445432347Ribosomal protein L22p/L17e
54344333333341Ribosomal protein L14p/L23e
193120222322172321172016251Ubiquitin family
77788674666577Cofilin/tropomyosin-type actin-binding protein
6638633343335114-3-3 protein
55355433332445Alkaline phosphatase
22Zinc carboxypeptidase
254215312926182018252833310Aldo/keto reductase family
293918193723192033182516296Myb-like DNA-binding domain
1214109101010106779114Forkhead domain
111126Glycosyl hydrolases family 32 N-terminal domain
11471141131429Ribosomal protein L16p/L10e
85314434333344Ribosomal protein S14p/S29e
109577646577578FKBP-type peptidyl-prolyl cis-trans isomerase
22212122211119Glutathione peroxidase
54534324
921101117159131110148148Flavodoxin
21111112111114Calreticulin family
69676785577780Aminotransferase class-V
23122331111121Ribonucleotide reductase, small chain
615252595148524747554560629DEAD/DEAH box helicase
9499778688818474778275881,005Helicase conserved C-terminal domain
12111111111113EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
65354443333346Ribosomal protein L23
23133111121726Pyridoxal-dependent decarboxylase, C-terminal sheet domain
65434335433245Ribosomal protein L5
56454445346454Pyridoxal-dependent decarboxylase conserved domain
42232122121224Citrate synthase, C-terminal domain
67656666666672GHMP kinases N terminal domain
1112711111191189810118Biotin carboxylase, N-terminal domain
11111111111112Tryptophan synthase alpha chain
1012989109999119114Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
212617161823201620181518228NUDIX domain
510636766656571pfkB family carbohydrate kinase
563529783654Glycosyl hydrolases family 28
55422443332239Ribosomal protein L3
86344445444353Ribosomal protein L11, RNA binding domain
121381011111111108109124Histidine phosphatase superfamily (branch 1)
21111111111113Thymidylate synthase
1611810899127875110ATP synthase alpha/beta chain, C terminal domain
161372216121091213813151Calponin homology (CH) domain
11Bacterial dnaA protein
7103691256645679Glutamine amidotransferases class-II
53334322333236Ribosomal protein S15
32113222122223'Cold-shock' DNA-binding domain
6731184554441677Thaumatin family
1131111111113Fructose-1-6-bisphosphatase, N-terminal domain
45233442322236Ribonucleotide reductase, all-alpha domain
67533444333348Ribosomal protein S2
14148121310979669117SRF-type transcription factor (DNA-binding and dimerisation domain)
526536514336383539332236486GATA zinc finger
12357519211019188257186Amino acid permease
79755676668678Prolyl oligopeptidase family
56466555431454Ribosomal protein L30p/L7e
36425532435547Histidine phosphatase superfamily (branch 2)
12122111111115Respiratory-chain NADH dehydrogenase, 30 Kd subunit
66456665546564Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
34234331355238Glycosyl hydrolases family 17
75425435333347Ribosomal protein S5, N-terminal domain
66564664553561Nucleoside diphosphate kinase
674126665354771Tetraspanin family
63333333332338Ribosomal protein S10p/S20e
454629322522332220252030349Arrestin (or S-antigen), N-terminal domain
11133111121218Phosphoglucose isomerase
132222113Carbohydrate phosphorylase
24222222221225SecY translocase
21111111111113Respiratory-chain NADH dehydrogenase, 49 Kd subunit
64354334333344Ribosomal protein L6
66555554553559Polyprenyl synthetase
15171011121110781189129Hexokinase
15997871087869103Dynamin family
11111111111112Biopterin-dependent aromatic amino acid hydroxylase
23122222111221Transcription factor TFIID (or TATA-binding protein, TBP)
65445545444555Rieske [2Fe-2S] domain
424313Proton-conducting membrane transporter
14159131312131010111011141Biotin-requiring enzyme
34222222222227Phosphofructokinase
33222222222226Ribosomal protein S17
22233331221226Hydroxymethylglutaryl-coenzyme A reductase
69645666655569FGGY family of carbohydrate kinases, N-terminal domain
312322111117Sodium:dicarboxylate symporter family
14178141414111112101214151Enoyl-CoA hydratase/isomerase
55333444433344Ribosomal protein S9/S16
11PTS HPr component phosphorylation site
23322333223230Transcription factor TFIIB repeat
9104710984667686Cytidine and deoxycytidylate deaminase zinc-binding region
22111112111115Molybdopterin oxidoreductase
1023124215918221811618204Chromo (CHRromatin Organisation MOdifier) domain
11Phosphatidylinositol-specific phospholipase C, X domain
66356555545661D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
67366554553560Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
331223222214276-phosphogluconate dehydrogenase, C-terminal domain
876685553751479Multicopper oxidase
1926131916812713151213173WW domain
43333333333337Ribosomal RNA adenine dimethylase
1922041551661711581641621571621451611,997WD domain, G-beta repeat
213Calponin family repeat
55524544354551Heavy-metal-associated domain
88455665544565Adenylate kinase
42343222242434Phosphoglucomutase/phosphomannomutase, C-terminal domain
45234333332237Ribosomal protein S8
44333423323236Ribosomal protein S11
201916181213161415161214185LIM domain
83573154454655Regulator of chromosome condensation (RCC1) repeat
54344442433343Ribosomal protein S13/S18
1212111111113Tau and MAP protein, tubulin-binding repeat
123NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
24262222222230chorismate binding enzyme
141585988776569860s Acidic ribosomal protein
33CUB domain
54324444434344Prenyltransferase and squalene oxidase repeat
12179121491011108109131Protein kinase C terminal domain
11Spectrin repeat
21111111111315Single-strand binding protein family
11Type II/IV secretion system protein
2211111111113S-adenosylmethionine synthetase, N-terminal domain
212317121720181418161216204Bromodomain
11Bacterial regulatory proteins, tetR family
212115162015161617171217203Acyl-CoA dehydrogenase, C-terminal domain
232719252326202122201921266Ubiquitin carboxyl-terminal hydrolase
1111111111111Ribosomal protein L36
122222114323236Ribonuclease T2 family
262918282420191414191221244HSF-type DNA-binding
32222232222125SRP54-type protein, GTPase domain
33111222111119Urease alpha-subunit, N-terminal domain
1074129567463780Serine carboxypeptidase
1215131010131210129912137Phosphatidylinositol 3- and 4-kinase
36243222242335Transketolase, thiamine diphosphate binding domain
111111112111WHEP-TRS domain
22222222222224Inositol monophosphatase family
686681085656680Glutaredoxin
54222221222228Isocitrate lyase family
42222222222226Serine hydroxymethyltransferase
2211111111113Iron-containing alcohol dehydrogenase
63431442331337Ribosomal protein L10
1714845109866711105KOW motif
11111111111112Ribosomal protein L34
111111118Ribosomal protein L33
23333332332333RF-1 domain
1111111119Sodium:solute symporter family
2211111111113Imidazoleglycerol-phosphate dehydratase
11111111111112DNA polymerase family A
23111221111117IMP dehydrogenase / GMP reductase domain
45234333232337Glucose-6-phosphate dehydrogenase, NAD binding domain
13179101110101111867123Protein phosphatase 2C
87687664655573Nucleotidyl transferase
33142212111122Carbonic anhydrase
23342221222126Phosphoribulokinase / Uridine kinase family
10137678616756495Fatty acid desaturase
66667766666775MutS domain V
1111211111112Delta-aminolevulinic acid dehydratase
63355223253443Arginase family
106666666676677MCM P-loop domain
63543344332444Squalene/phytoene synthase
242916262517201815191419242FHA domain
1124NADH-ubiquinone/plastoquinone oxidoreductase chain 6
365727494737343630422543463AMP-binding enzyme
201791214121210811912146G-protein alpha subunit
253121283321232319241620284HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
1215718187988101215139His Kinase A (phospho-acceptor) domain
719998109108876110Armadillo/beta-catenin-like repeat
285720254436243137173624379Tetratricopeptide repeat
618589867458589Ion transport protein
11111111111112DNA gyrase/topoisomerase IV, subunit A
11Periplasmic binding proteins and sugar binding domain of LacI family
913610111066129127111BRCA1 C Terminus (BRCT) domain
1096910978787898Glycosyl transferases group 1
28225425326243Glycosyl transferase family 2
59664243723455SAM domain (Sterile alpha motif)
2221312123221linker histone H1 and H5 family
2111211111113Ribosomal protein L7/L12 C-terminal domain
33111222111119Urease, gamma subunit
57346443353552CoA-ligase
49478868496578Phosphopantetheine attachment site
22222222222224Formyl transferase
11Cellulose binding domain
191613111315151415121215170Metallopeptidase family M24
1445101535331333279266266Leucine Rich Repeat
1033543025823166328200alpha/beta hydrolase fold
44324333333338RNA polymerase Rpb2, domain 6
1817917178910812813146PB1 domain
22212222232224Staphylococcal nuclease homologue
414526393227312922262026364Rab-GTPase-TBC domain
1111111