PFAM Domains • Rhizophagus irregularis DAOM 181602 v1.0
Annotations/GenomesGloin1Hebcy1Lacbi2Mucci2Oidma1Paxin1Phybl2Pilcr1Tubme1TotalAnnotation Description
PFAMs
12,1047,7638,6569,58412,2698,9489,2168,9305,89983,369
117 transmembrane receptor (rhodopsin family)
4377 transmembrane sweet-taste receptor of 3 GCPR
514539445945485445430ATPase family associated with various cellular activities (AAA)
424449527547485335445ABC transporter
444944125450ATP synthase alpha/beta family, nucleotide-binding domain
11114EGF-like domain
141816171414211516145Elongation factor Tu GTP binding domain
11112037151035108157Helix-loop-helix DNA-binding domain
117107566355Hsp20/alpha crystallin family
371215119912249138Hsp70 protein
2688148812911104KH domain
111111118SH2 domain
282940412326373320277SH3 domain
101115111011111111101Actin
3132954214898376517565Ankyrin repeat
55PAN domain
8891279107777ADP-ribosylation factor family
9162427323433433221Eukaryotic aspartyl protease
43374373438Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
121127Cytochrome b/b6/petB
111111118Cytochrome c
7911128113355Double-stranded RNA binding motif
292018431817352217219EF hand
11211112104Fe-4S binding domain
11113211213Fibronectin type III domain
224Globin
236131333147168133Glutathione S-transferase, C-terminal domain
22531131220Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
44Hemopexin
98102771028124115Homeodomain
112Laminin EGF domain
32253253227lactate/malate dehydrogenase, NAD binding domain
5571756169676Myosin head (motor domain)
1919186411701965413026985Cytochrome P450
1,009209217237128274220269932,656Protein kinase domain
81814182916161510144Pyridine nucleotide-disulphide oxidoreductase
292953603024542625330Ras family
17671516718912107Response regulator receiver domain
367831625481RNase H
886571885565976862659RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1173315Reverse transcriptase (RNA-dependent DNA polymerase)
213Serpin (serine protease inhibitor)
32132121217Copper/zinc superoxide dismutase (SODC)
12323212218Iron/manganese superoxide dismutases, alpha-hairpin domain
22125161322437104Subtilase family
722214715432284218371Sugar (and other) transporter
8101015111213138100Thioredoxin
5432216Trypsin
69686595660Tubulin/FtsZ family, GTPase domain
16564710755von Willebrand factor type A domain
91656314094742035841829Zinc finger, C2H2 type
576166644861556836516Zinc finger, C3HC4 type (RING finger)
5621344551970469305Zinc knuckle
32263252227Protein-tyrosine phosphatase
4150494525663337945661short chain dehydrogenase
2224312913425233314335Zinc-binding dehydrogenase
554107455449Thiolase, N-terminal domain
135350928485Beta-ketoacyl synthase, N-terminal domain
437444443372Fe-2S iron-sulfur cluster binding domain
314Papain family cysteine protease
11123121113Enolase, C-terminal TIM barrel domain
52411Cytochrome C and Quinol oxidase polypeptide I
11114Cytochrome C oxidase subunit II, periplasmic domain
8713979107777Glutamine amidotransferase class-I
101113111013152312118TCP-1/cpn60 chaperonin family
1113ATP synthase A chain
54755464343Glutamine synthetase, catalytic domain
11112111110Triosephosphate isomerase
241420301617261715179E1-E2 ATPase
2115241492020219153Core histone H2A/H2B/H3/H4
44Bacterial regulatory helix-turn-helix protein, lysR family
21328Copper binding proteins, plastocyanin/azurin family
38915614744Alpha amylase, catalytic domain
55641675241Phorbol esters/diacylglycerol binding domain (C1 domain)
85489457858Bacterial transferase hexapeptide (six repeats)
103343445440tRNA synthetases class I (I, L, M and V)
710141879189799Cyclin, N-terminal domain
21715364411283174Carboxylesterase family
254454544459DNA polymerase family B
43455343435ATP synthase subunit C
11Legume lectin domain
28345222129Peroxidase
272137110161Beta-lactamase
65424444336C-5 cytosine-specific DNA methylase
21115NADH dehydrogenase
303233373031342921277Calcineurin-like phosphoesterase
2109317947364Cellulase (glycosyl hydrolase family 5)
76569767659tRNA synthetases class II (D, K and N)
363841634243544234393Mitochondrial carrier protein
11recA bacterial DNA recombination protein
111412202419201510145Aminotransferase class I and II
106813118116780Phosphoribosyl transferase domain
11Sigma-54 interaction domain
101313151016141610117Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11121111110Phosphoglycerate kinase
22332232221Ribosomal protein S4/S9 N-terminal domain
22242242222Ribosomal protein S12/S23
314Bacterial regulatory helix-turn-helix proteins, AraC family
12121121112Chaperonin 10 Kd subunit
27171823914224312185C2 domain
291724441717482018234PH domain
567282051979106bZIP transcription factor
121215154518121810157Aldehyde dehydrogenase family
2065734646960477456910Fungal Zn(2)-Cys(6) binuclear cluster domain
292423413741392419277Cytochrome b5-like Heme/Steroid binding domain
33322112219Oxidoreductase molybdopterin binding domain
1478161881399102Oxidoreductase NAD-binding domain
192622203123202919209SNF2 family N-terminal domain
22342232222Ribosomal protein S7p/S5e
542323222221202321229Ubiquitin-conjugating enzyme
65689787561Isocitrate/isopropylmalate dehydrogenase
32251242223Ribosomal Proteins L2, RNA binding domain
11Chitinase class I
22241242120Hsp90 protein
22233162223Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11121121111Dihydrofolate reductase
1337Chitin recognition protein
35962112231Cysteine-rich secretory protein family
11151141116Ribosomal protein S3, C-terminal domain
11513112Cupin
122128Annexin
3811316Eukaryotic-type carbonic anhydrase
11Chalcone and stilbene synthases, N-terminal domain
88Bacterial regulatory proteins, luxR family
333633433312-oxoacid dehydrogenases acyltransferase (catalytic domain)
21411423330Catalase
111321110Disintegrin
1861011238UDP-glucoronosyl and UDP-glucosyl transferase
456615565355Aminotransferase class-III
22442242224Ribosomal protein S19
31111111111DNA gyrase B
333614532443Thiamine pyrophosphate enzyme, central domain
33445444435Lyase
32333133223Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1225Ferritin-like domain
12122121113Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
21111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
11211111110Indole-3-glycerol phosphate synthase
4231414Aromatic amino acid lyase
11131131113Pyruvate kinase, barrel domain
3091028109201110137Kinesin motor domain
373536392837343326305DnaJ domain
151414141416141414129Proteasome subunit
36726428240Major intrinsic protein
11121221112ATP synthase
21331221Glycosyl hydrolase family 1
211811611223'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
1111111119Profilin
32141252222Ribosomal protein L22p/L17e
22232232220Ribosomal protein L14p/L23e
731821221231233312245Ubiquitin family
55564544442Cofilin/tropomyosin-type actin-binding protein
2113333232114-3-3 protein
2224231319Alkaline phosphatase
111115Zinc carboxypeptidase
48262426682920408289Aldo/keto reductase family
511214231712201316178Myb-like DNA-binding domain
5551035106453Forkhead domain
41117Glycosyl hydrolases family 32 N-terminal domain
11111115113Ribosomal protein L16p/L10e
22242242222Ribosomal protein S14p/S29e
23663464438FKBP-type peptidyl-prolyl cis-trans isomerase
11111121110Glutathione peroxidase
21251231219
56515135136472Flavodoxin
21111121111Calreticulin family
337145436Common central domain of tyrosinase
776713657563Aminotransferase class-V
11Gram-negative porin
12131113114Ribonucleotide reductase, small chain
565180483772475935485DEAD/DEAH box helicase
86901158181110749865800Helicase conserved C-terminal domain
112Fructose-bisphosphate aldolase class-I
31112111112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22242232221Ribosomal protein L23
21111211111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1213215116Ribosomal protein L5
454413555449Pyridoxal-dependent decarboxylase conserved domain
23313323323Citrate synthase, C-terminal domain
66665467551GHMP kinases N terminal domain
7661176115261Biotin carboxylase, N-terminal domain
11111211211Tryptophan synthase alpha chain
77710131198981Pyridoxal-phosphate dependent enzyme
112'Paired box' domain
141814231715161711145NUDIX domain
66575366347pfkB family carbohydrate kinase
26221397252Glycosyl hydrolases family 28
112Luciferase-like monooxygenase
22242232221Ribosomal protein L3
22242252223Ribosomal protein L11, RNA binding domain
10971116911141299Histidine phosphatase superfamily (branch 1)
11Chloramphenicol acetyltransferase
11112211414Thymidylate synthase
112Lipoxygenase
444945125451ATP synthase alpha/beta chain, C terminal domain
555124694656Calponin homology (CH) domain
855126565456Glutamine amidotransferases class-II
22232222219Ribosomal protein S15
62210'Cold-shock' DNA-binding domain
334135322Thaumatin family
1111111119Fructose-1-6-bisphosphatase, N-terminal domain
21141124117Ribonucleotide reductase, all-alpha domain
22242342223Ribosomal protein S2
233105273237SRF-type transcription factor (DNA-binding and dimerisation domain)
241012368935108152GATA zinc finger
61823215445192516227Amino acid permease
112Bacterial regulatory proteins, crp family
6686101169668Prolyl oligopeptidase family
21152154223Ribosomal protein L30p/L7e
6785922212475Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44866554446Aconitase family (aconitate hydratase)
12115Glycosyl hydrolase family 10
3333111318Glycosyl hydrolases family 17
12242252222Ribosomal protein S5, N-terminal domain
12261142120Nucleoside diphosphate kinase
223615221Tetraspanin family
224Galactoside-binding lectin
22232231219Ribosomal protein S10p/S20e
155822106222393Arrestin (or S-antigen), N-terminal domain
11111211110Phosphoglucose isomerase
2112111110Carbohydrate phosphorylase
11121121111SecY translocase
22Pili and flagellar-assembly chaperone, PapD N-terminal domain
11511112114Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22232243222Ribosomal protein L6
358510744349Polyprenyl synthetase
242115274239Hexokinase
668771288466Dynamin family
1113Biopterin-dependent aromatic amino acid hydroxylase
11221122113Transcription factor TFIID (or TATA-binding protein, TBP)
54555355441Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
22Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
11Phytochrome region
432312Proton-conducting membrane transporter
79812106107473Biotin-requiring enzyme
11121221112Phosphofructokinase
12222222116Ribosomal protein S17
11232111113Hydroxymethylglutaryl-coenzyme A reductase
23263463332FGGY family of carbohydrate kinases, N-terminal domain
44Hemocyanin, copper containing domain
213Sodium:dicarboxylate symporter family
44MerR family regulatory protein
98814191311126100Enoyl-CoA hydratase/isomerase
11Insect cuticle protein
22242242222Ribosomal protein S9/S16
33332233224Transcription factor TFIIB repeat
57799848562Cytidine and deoxycytidylate deaminase zinc-binding region
31111121112Molybdopterin oxidoreductase
81021971822143112Chromo (CHRromatin Organisation MOdifier) domain
134232116Phosphatidylinositol-specific phospholipase C, Y domain
134232318Phosphatidylinositol-specific phospholipase C, X domain
36457756649D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
14653242229Malic enzyme, N-terminal domain
11Bacterial regulatory proteins, gntR family
211311211136-phosphogluconate dehydrogenase, C-terminal domain
8313526155205100Multicopper oxidase
11Granulin
1210881411710686WW domain
22231234120Ribosomal RNA adenine dimethylase
11Yeast PIR protein repeat
1421462211581464781622931001,846WD domain, G-beta repeat
73356544542Heavy-metal-associated domain
11Transferrin
33363453434Adenylate kinase
22223121318Phosphoglucomutase/phosphomannomutase, C-terminal domain
21132131216Ribosomal protein S8
32241132119Ribosomal protein S11
5871346146467LIM domain
347Matrixin
53312242224Regulator of chromosome condensation (RCC1) repeat
32242222120Ribosomal protein S13/S18
213Tau and MAP protein, tubulin-binding repeat
44Fimbrial protein
12115NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
22223522222chorismate binding enzyme
4348327333760s Acidic ribosomal protein
56645644444Prenyltransferase and squalene oxidase repeat
656957117662Protein kinase C terminal domain
111111118Single-strand binding protein family
1111111119S-adenosylmethionine synthetase, N-terminal domain
4110102061014106127Bromodomain
33Bacterial regulatory proteins, tetR family
9981519816911104Acyl-CoA dehydrogenase, C-terminal domain
231416261515211514159Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
331524220Ribonuclease T2 family
6642034144364HSF-type DNA-binding
32222322119SRP54-type protein, GTPase domain
11121221112Urease alpha-subunit, N-terminal domain
810751210715377Serine carboxypeptidase
89813881010882Phosphatidylinositol 3- and 4-kinase
11DeoR C terminal sensor domain
13224222119Transketolase, thiamine diphosphate binding domain
88Glycosyl hydrolases family 11
11111117WHEP-TRS domain
32224223222Inositol monophosphatase family
455103654446Glutaredoxin
14224314223Isocitrate lyase family
21122221215Serine hydroxymethyltransferase
2216314120Iron-containing alcohol dehydrogenase
22242222119Ribosomal protein L10
458102583348KOW motif
1111111119Ribosomal protein L34
11Ribosomal protein L33
42232222221RF-1 domain
1121323215Sodium:solute symporter family
1111111119Imidazoleglycerol-phosphate dehydratase
21111112111DNA polymerase family A
11121311112IMP dehydrogenase / GMP reductase domain
11131131113Glucose-6-phosphate dehydrogenase, NAD binding domain
109910591116483Protein phosphatase 2C
73362342434Nucleotidyl transferase
27721142237Carbonic anhydrase
21121111212Phosphoribulokinase / Uridine kinase family
44Transcriptional regulatory protein, C terminal
10118811261694103Fatty acid desaturase
56676666654MutS domain V
11122111111Delta-aminolevulinic acid dehydratase
15225433328Arginase family
86666666656MCM P-loop domain
21231241117Squalene/phytoene synthase
11911177818129102FHA domain
1113NADH-ubiquinone/plastoquinone oxidoreductase chain 6
222529377547364221334AMP-binding enzyme
419491231310343147G-protein alpha subunit
13114162171523158250HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
1044713486965His Kinase A (phospho-acceptor) domain
7321033104345Armadillo/beta-catenin-like repeat
593873367226315738430Tetratricopeptide repeat
372283273165Ion transport protein
21111111110DNA gyrase/topoisomerase IV, subunit A
11Binding-protein-dependent transport system inner membrane component
11HlyD membrane-fusion protein of T1SS
22Periplasmic binding proteins and sugar binding domain of LacI family
81112101196101087BRCA1 C Terminus (BRCT) domain
115797686564Glycosyl transferases group 1
116347354245Glycosyl transferase family 2
84122132225SAM domain (Sterile alpha motif)
4441134122linker histone H1 and H5 family
211111119Ribosomal protein L7/L12 C-terminal domain
224Pectate lyase
33118ribonuclease
1112121110Urease, gamma subunit
33344433330CoA-ligase
285846118107105Phosphopantetheine attachment site
12222322218Formyl transferase
11Antenna complex alpha/beta subunit
6991510101410790Metallopeptidase family M24
551316331414331410202Leucine Rich Repeat
263220258626234819305alpha/beta hydrolase fold
53333333329RNA polymerase Rpb2, domain 6
22EAL domain
1057845108461PB1 domain
22222222218Staphylococcal nuclease homologue
15111127101129811133Rab-GTPase-TBC domain
1111111119Tudor domain
13221212115WH1 domain
153454356550Zinc finger, ZZ type
11121111110HRDC domain
13109181011181010109CBS domain
22232252222Ribosomal protein L13
32242242223Ribosomal protein L4/L1 family
1111111119Clp protease
55433634538S1 RNA binding domain
111111118HIUase/Transthyretin family
22Outer membrane usher protein
34454656441AhpC/TSA family
44444444335tRNA synthetases class I (W and Y)
2112112111UvrD/REP helicase N-terminal domain
64486484549Rhodanese-like domain
3221223122139Universal stress protein family
233128437623273213296Acetyltransferase (GNAT) family
11111121110SecE/Sec61-gamma subunits of protein translocation complex
11111311111C-terminal regulatory domain of Threonine dehydratase
12222222217AIR synthase related protein, N-terminal domain
116611106116976tRNA synthetase class II core domain (G, H, P, S and T)
131319SpoU rRNA Methylase family
432312Phage integrase family
32532232224Tetrapyrrole (Corrin/Porphyrin) Methylases
1111111119Glycosyl transferase family, a/b domain
11114PDZ domain
121215223331Class II Aldolase and Adducin N-terminal domain
22Adenoviral fibre protein (repeat/shaft region)
11Diacylglycerol kinase accessory domain
44364463438Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
488123585558Fes/CIP4, and EFC/F-BAR homology domain
45594486449IQ calmodulin-binding motif
22232232220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
93484487451Phospholipase D Active site motif
611811101130Regulator of G protein signaling domain
5441046104451GTPase-activator protein for Ras-like GTPase
69717461811482RasGEF domain
5889491011569RasGEF N-terminal motif
11171333813291410148RhoGAP domain
1013163161528136138RhoGEF domain
674412341035112SPRY domain
33333637435RNA polymerase Rpb1, domain 2
11112111211Guanylate kinase
44474384341Gelsolin repeat
199101387159898UBA/TS-N domain
182318231716261813172PHD-finger
11Filamin/ABP280 repeat
113113111GGL domain
6651065910663HECT-domain (ubiquitin-transferase)
31223212218Helix-hairpin-helix motif
11BRCA2 repeat
11211121111MSP (Major sperm protein) domain
98734926553Ribonuclease III domain
422222214131Region in Clathrin and VPS
24322323324RanBP1 domain
22222222218PPIC-type PPIASE domain
53524341330Zn-finger in Ran binding protein and others
192530171821142812184Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1112218B-box zinc finger
78411519238Poly(ADP-ribose) polymerase catalytic domain
121121210Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
892281561056977202114391,079F-box domain
11221121112Elongation factor 1 gamma, conserved domain
25815112126Calpain family cysteine protease
13263272228Copper fist DNA binding domain
566105688559CRAL/TRIO domain
6672517752931238812BTB/POZ domain
1411117418561Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain