PFAM Domains • Mycena sp. CBHHK59/15 v1.0
Annotations/GenomesMyc59_1Mycgal1Mychae1Mycros1Mycrub1Panst_KUC8834_1_1Panst_LUM_1_1TotalAnnotation Description
PFAMs
15,27421,25511,85015,70518,1758,99311,489102,741
1237 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
81774953645154429ATPase family associated with various cellular activities (AAA)
8311561891245356581ABC transporter
444454530ATP synthase alpha/beta family, nucleotide-binding domain
22EGF-like domain
22201720221721139Elongation factor Tu GTP binding domain
21231717181415125Helix-loop-helix DNA-binding domain
141010111011975Hsp20/alpha crystallin family
10131214218886Hsp70 protein
888888856KH domain
11SH2 domain
16332018242917157SH3 domain
16221518211319124Actin
161601572854210400Ankyrin repeat
3148PAN domain
14149171581087ADP-ribosylation factor family
531194968913334447Eukaryotic aspartyl protease
343333423Cyclic nucleotide-binding domain
22Cytochrome b/b6/petB
132222315Cytochrome c
5135787550Double-stranded RNA binding motif
2332317131EF hand
334Fe-4S binding domain
1113Fibronectin type III domain
24541831401310190Glutathione S-transferase, C-terminal domain
11112118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
131391113111181Homeodomain
11Laminin EGF domain
221222213lactate/malate dehydrogenase, NAD binding domain
696755644Myosin head (motor domain)
2395441583324591251502,007Cytochrome P450
3944552533083431852102,148Protein kinase domain
16211516191916122Pyridine nucleotide-disulphide oxidoreductase
49894354703135371Ras family
122412131610996Response regulator receiver domain
38483047462829266RNase H
101806369626758500RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Reverse transcriptase (RNA-dependent DNA polymerase)
1111116Copper/zinc superoxide dismutase (SODC)
432223319Iron/manganese superoxide dismutases, alpha-hairpin domain
3377305066527288Subtilase family
64945677713945446Sugar (and other) transporter
12161315161315100Thioredoxin
91088107759Tubulin/FtsZ family, GTPase domain
134von Willebrand factor type A domain
32413134506835291Zinc finger, C2H2 type
2520121267111157Zinc finger, C3HC4 type (RING finger)
17292532211711152Zinc knuckle
432232218Protein-tyrosine phosphatase
1432791202032641231441,276short chain dehydrogenase
451053576935256462Zinc-binding dehydrogenase
555544432Thiolase, N-terminal domain
7389101181093Beta-ketoacyl synthase, N-terminal domain
322222132Fe-2S iron-sulfur cluster binding domain
12211119Enolase, C-terminal TIM barrel domain
9137888962Glutamine amidotransferase class-I
101091111111173TCP-1/cpn60 chaperonin family
654365736Glutamine synthetase, catalytic domain
21111118Triosephosphate isomerase
22271719201819142E1-E2 ATPase
38492434381920222Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
121571517131493Alpha amylase, catalytic domain
554547434Phorbol esters/diacylglycerol binding domain (C1 domain)
566744234Bacterial transferase hexapeptide (six repeats)
644453430tRNA synthetases class I (I, L, M and V)
14161514162314112Cyclin, N-terminal domain
59117541041154449542Carboxylesterase family
444444428DNA polymerase family B
233333421ATP synthase subunit C
25681032911214252Peroxidase
204813293588161Beta-lactamase
686654439C-5 cytosine-specific DNA methylase
35462630393733246Calcineurin-like phosphoesterase
26382425291622180Cellulase (glycosyl hydrolase family 5)
565666539tRNA synthetases class II (D, K and N)
44464141474044303Mitochondrial carrier protein
22281720211721146Aminotransferase class I and II
444335326Phosphoribosyl transferase domain
15221214141313103Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
11111128Chaperonin 10 Kd subunit
23361818251614150C2 domain
710981322675PH domain
25141510155892bZIP transcription factor
18561822221718171Aldehyde dehydrogenase family
1122101101451761371181,008Fungal Zn(2)-Cys(6) binuclear cluster domain
21252127282423169Cytochrome b5-like Heme/Steroid binding domain
211241112Oxidoreductase molybdopterin binding domain
815111413101182Oxidoreductase NAD-binding domain
30302528272730197SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
28382528312322195Ubiquitin-conjugating enzyme
766567643Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
222222214Hsp90 protein
232222215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
12111118Dihydrofolate reductase
251231115Chitin recognition protein
852262227Cysteine-rich secretory protein family
11113119Ribosomal protein S3, C-terminal domain
811516166870Cupin
122211110Annexin
1146Eukaryotic-type carbonic anhydrase
261131115Chalcone and stilbene synthases, N-terminal domain
5443333252-oxoacid dehydrogenases acyltransferase (catalytic domain)
367753435Catalase
11111117Disintegrin
716320191571UDP-glucoronosyl and UDP-glucosyl transferase
61068871055Aminotransferase class-III
222242216Ribosomal protein S19
1111116DNA gyrase B
474674436Thiamine pyrophosphate enzyme, central domain
333343322Lyase
222262218Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
232232317Adenylate and Guanylate cyclase catalytic domain
21111118ATP synthase delta (OSCP) subunit
11121118Orotidine 5'-phosphate decarboxylase / HUMPS family
11112118Indole-3-glycerol phosphate synthase
433435527Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
161181312121082Kinesin motor domain
32353033352929223DnaJ domain
16181418161618116Proteasome subunit
7105876750Major intrinsic protein
11121118ATP synthase
354333526Glycosyl hydrolase family 1
221111193'5'-cyclic nucleotide phosphodiesterase
21111118Profilin
232221214Ribosomal protein L22p/L17e
263322220Ribosomal protein L14p/L23e
13201520231517123Ubiquitin family
474655536Cofilin/tropomyosin-type actin-binding protein
13222111214-3-3 protein
22Alkaline phosphatase
23113212Zinc carboxypeptidase
7711066881096060570Aldo/keto reductase family
8788714658Myb-like DNA-binding domain
24118876973Forkhead domain
11111117Glycosyl hydrolases family 32 N-terminal domain
321221213Ribosomal protein L16p/L10e
223222316Ribosomal protein S14p/S29e
433433323FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
11
51181287758Flavodoxin
22Tropomyosin
11121118Calreticulin family
47411102341Common central domain of tyrosinase
9141210137873Aminotransferase class-V
4207222239Ribonucleotide reductase, small chain
226155731431076072836DEAD/DEAH box helicase
195173911271209893897Helicase conserved C-terminal domain
151111111EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
223522218Ribosomal protein L23
122322315Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2111117Ribosomal protein L5
6661386752Pyridoxal-dependent decarboxylase conserved domain
944473536Citrate synthase, C-terminal domain
565655638GHMP kinases N terminal domain
596676645Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
141381013101078Pyridoxal-phosphate dependent enzyme
145'Paired box' domain
17171416141313104NUDIX domain
554556636pfkB family carbohydrate kinase
37298212589137Glycosyl hydrolases family 28
243222217Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
12111110108769Histidine phosphatase superfamily (branch 1)
11121118Thymidylate synthase
454454531ATP synthase alpha/beta chain, C terminal domain
466657741Calponin homology (CH) domain
332225219Glutamine amidotransferases class-II
122222213Ribosomal protein S15
1127148186993Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
363435630Ribonucleotide reductase, all-alpha domain
222252217Ribosomal protein S2
333243422SRF-type transcription factor (DNA-binding and dimerisation domain)
38521623422731229GATA zinc finger
1613121216249102Amino acid permease
13148151481183Prolyl oligopeptidase family
222321214Ribosomal protein L30p/L7e
1414111514131192Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
554555635Aconitase family (aconitate hydratase)
8106475444Glycosyl hydrolase family 10
212322214Glycosyl hydrolases family 17
222122112Ribosomal protein S5, N-terminal domain
222222214Nucleoside diphosphate kinase
1066975649Tetraspanin family
213Galactoside-binding lectin
222342217Ribosomal protein S10p/S20e
920812189581Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
141311213Carbohydrate phosphorylase
11121129SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
122222112Ribosomal protein L6
101348103351Polyprenyl synthetase
242262321Hexokinase
252113131459100Dynamin family
11211219Transcription factor TFIID (or TATA-binding protein, TBP)
452364327Rieske [2Fe-2S] domain
21115Phytochrome region
9108788858Biotin-requiring enzyme
11111117Phosphofructokinase
222122213Ribosomal protein S17
12121119Hydroxymethylglutaryl-coenzyme A reductase
333333321FGGY family of carbohydrate kinases, N-terminal domain
91715172091198Enoyl-CoA hydratase/isomerase
122222213Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
9897108859Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
2419121612177107Chromo (CHRromatin Organisation MOdifier) domain
333533323Phosphatidylinositol-specific phospholipase C, Y domain
876763441Phosphatidylinositol-specific phospholipase C, X domain
7867107550D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
111221196-phosphogluconate dehydrogenase, C-terminal domain
33381232441112182Multicopper oxidase
81087710959WW domain
322222215Ribosomal RNA adenine dimethylase
2001821361602141251331,150WD domain, G-beta repeat
643442225Heavy-metal-associated domain
433333322Adenylate kinase
232332318Phosphoglucomutase/phosphomannomutase, C-terminal domain
322221315Ribosomal protein S8
222223316Ribosomal protein S11
666776644LIM domain
564563332Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
222222214chorismate binding enzyme
53454453060s Acidic ribosomal protein
656575640Prenyltransferase and squalene oxidase repeat
565458538Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
23241217161110113Bromodomain
1113101313111384Acyl-CoA dehydrogenase, C-terminal domain
18191614212120129Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
5116665544Ribonuclease T2 family
574474435HSF-type DNA-binding
322222215SRP54-type protein, GTPase domain
21111118Urease alpha-subunit, N-terminal domain
38442950642328276Serine carboxypeptidase
9999109964Phosphatidylinositol 3- and 4-kinase
422422218Transketolase, thiamine diphosphate binding domain
396775643Glycosyl hydrolases family 11
112WHEP-TRS domain
432342220Inositol monophosphatase family
574564738Glutaredoxin
422325220Isocitrate lyase family
21111129Serine hydroxymethyltransferase
375664536Iron-containing alcohol dehydrogenase
232222215Ribosomal protein L10
554575637KOW motif
1111116Ribosomal protein L34
1111116Ribosomal protein L33
333332320RF-1 domain
311443420Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11121118IMP dehydrogenase / GMP reductase domain
222222214Glucose-6-phosphate dehydrogenase, NAD binding domain
31141614191616126Protein phosphatase 2C
333332320Nucleotidyl transferase
4126593342Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
15161513211315108Fatty acid desaturase
666666743MutS domain V
11111117Delta-aminolevulinic acid dehydratase
554684436Arginase family
697566746MCM P-loop domain
233321216Squalene/phytoene synthase
19281521191617135FHA domain
691134676824349478AMP-binding enzyme
41683232422929273G-protein alpha subunit
22252721262120162HMG (high mobility group) box
9146986658His Kinase A (phospho-acceptor) domain
11511075544Armadillo/beta-catenin-like repeat
25241221183016146Tetratricopeptide repeat
464343529Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
61079912962BRCA1 C Terminus (BRCT) domain
71635118757Glycosyl transferases group 1
642454328Glycosyl transferase family 2
1122122121SAM domain (Sterile alpha motif)
845465335linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
373619Pectate lyase
1123512ribonuclease
21111118Urease, gamma subunit
343434526CoA-ligase
1531111821811115Phosphopantetheine attachment site
222321214Formyl transferase
1316151314101192Metallopeptidase family M24
412512327Leucine Rich Repeat
32492239395319253alpha/beta hydrolase fold
343332321RNA polymerase Rpb2, domain 6
9115694549PB1 domain
222222214Staphylococcal nuclease homologue
1214121213101386Rab-GTPase-TBC domain
11111117Tudor domain
222231214WH1 domain
15631083449Zinc finger, ZZ type
1111116HRDC domain
711710910862CBS domain
222222214Ribosomal protein L13
332222216Ribosomal protein L4/L1 family
11111117Clp protease
544454329S1 RNA binding domain
11111117HIUase/Transthyretin family
655585640AhpC/TSA family
445454430tRNA synthetases class I (W and Y)
334331219UvrD/REP helicase N-terminal domain
1389111241067Rhodanese-like domain
321222214Universal stress protein family
33703837523825293Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
322222215AIR synthase related protein, N-terminal domain
4127566444tRNA synthetase class II core domain (G, H, P, S and T)
232622219Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
11PDZ domain
121465104455Class II Aldolase and Adducin N-terminal domain
443744329Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
666665641Fes/CIP4, and EFC/F-BAR homology domain
233235321IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
121224214Phospholipase D Active site motif
445351325Regulator of G protein signaling domain
544444429GTPase-activator protein for Ras-like GTPase
101589147770RasGEF domain
81066117755RasGEF N-terminal motif
1316131213131191RhoGAP domain
19231518221416127RhoGEF domain
333434525SPRY domain
452333323RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
344665533Gelsolin repeat
755869545UBA/TS-N domain
16151314162018112PHD-finger
222221213GGL domain
695755542HECT-domain (ubiquitin-transferase)
1113Helix-hairpin-helix motif
11112118MSP (Major sperm protein) domain
433655329Ribonuclease III domain
694452434Region in Clathrin and VPS
454454430RanBP1 domain
112223314PPIC-type PPIASE domain
2224212Zn-finger in Ran binding protein and others
17151216162521122Zinc finger C-x8-C-x5-C-x3-H type (and similar)
21311412B-box zinc finger
8847115548Poly(ADP-ribose) polymerase catalytic domain
232222215Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
414735365211321345F-box domain
121311110Elongation factor 1 gamma, conserved domain
1374774446Calpain family cysteine protease
531332219Copper fist DNA binding domain
8910111181168CRAL/TRIO domain
6113562811332848548BTB/POZ domain
26362725441612186Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333333422Voltage gated chloride channel
37531429401314200Caspase domain
1615812179784GDSL-like Lipase/Acylhydrolase
332222216Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
40673153703127319ABC transporter transmembrane region
7127995756FAD binding domain
231265120Condensation domain
132111110S-adenosyl-L-homocysteine hydrolase, NAD binding domain
142121112HAMP domain
792232227ribosomal L5P family C-terminus
645556536Insulinase (Peptidase family M16)
454444328Dehydrogenase E1 component
1111116Lumazine binding domain
101199117865Elongation factor G C-terminus
1084674443HMGL-like
444444428DnaJ central domain
754654435Starch binding domain
233332319Ribosomal protein L1p/L10e family
888576850Cation transporting ATPase, C-terminus
71186108858Cation transporter/ATPase, N-terminus
413212215dUTPase
555555636Aconitase C-terminal domain
342335424Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
737910891191Acyl transferase domain
21111118Urease beta subunit
332334321Dihydrodipicolinate synthetase family
19201615163615137haloacid dehalogenase-like hydrolase
123452219Glycosyl hydrolases family 2
28381617311216158Glycosyl hydrolases family 18
21111118Proliferating cell nuclear antigen, N-terminal domain
1111116Translation initiation factor IF-3, C-terminal domain
21111118Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
553533327Peptidase S24-like
222222214Inorganic pyrophosphatase
1527161918510110Glycosyl hydrolases family 16
533343324Glycosyl hydrolases family 15
23572645482325247NADH:flavin oxidoreductase / NADH oxidase family
1522311153-hydroxyacyl-CoA dehydrogenase, C-terminal domain
644444632Glycosyl hydrolase family 20, catalytic domain
655665437HhH-GPD superfamily base excision DNA repair protein
2221119AIR carboxylase
98141641351162228604GMC oxidoreductase
102441473264Asparagine synthase
40533234462432261Fungal cellulose binding domain
98989111165Septin
161111112EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
141912111531791Flavin-binding monooxygenase-like
633733328tRNA synthetases class I (E and Q), catalytic domain
521211113tRNA synthetases class I (R)
1521141276883XPG N-terminal domain
1738122040169152Metallo-beta-lactamase superfamily
1113F5/8 type C domain
654445634Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Glycosyl hydrolase family 9
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
12121119Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
433433323RNB domain
343363325Dioxygenase
912910126967CNH domain
333333321Diacylglycerol kinase catalytic domain
17271615261318132Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
365453430P21-Rho-binding domain
15201418161515113PX domain
333243422Ras association (RalGDS/AF-6) domain
6144555443UBX domain
584954641VHS domain
11111117Phosphoinositide 3-kinase C2
322222215DAHP synthetase I family
7126797755Carbon-nitrogen hydrolase
643433427N-acetyltransferase
1111116Prephenate dehydratase
554245429Syntaxin
6105555642Pumilio-family RNA binding repeat
888978856Histone-like transcription factor (CBF/NF-Y) and archaeal histone
21111118Pterin binding enzyme
162522422ER lumen protein retaining receptor
222222214Glycoprotease family
11111117Histidinol dehydrogenase
533333323impB/mucB/samB family
11
21111118Ribosomal L15
332341319Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
21111129Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
111115Translationally controlled tumour protein
31251398555Glycosyl hydrolase family 7
235Ring hydroxylating alpha subunit (catalytic domain)
222222214RNA pseudouridylate synthase
1077777651Histone deacetylase domain
11766133349POT family
112542116PWWP domain
45493231432024244SET domain
1319111318101195Isochorismatase family
822432223Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
1945212511914144XPG I-region
11111218Acetokinase family
11121118DNA photolyase
11114Cation-independent mannose-6-phosphate receptor repeat
11Defensin propeptide
3224415Nitroreductase family
21111118Cytosol aminopeptidase family, catalytic domain
121551116Sulfatase
111113196,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
343333322Acyl CoA binding protein
617108226675Cullin family
2