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PFAM Domains • Serpulomyces borealis OMC1750 v1.0
Annotations/GenomesAmysub1Anoalb1Anobom1Anomyc1Plicr1Serbor1TotalAnnotation Description
PFAMs
8,5498,7989,4598,9838,12310,12954,041
21147 transmembrane receptor (rhodopsin family)
393646354140237ATPase family associated with various cellular activities (AAA)
354438374741242ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
14151415151487Elongation factor Tu GTP binding domain
13121112111170Helix-loop-helix DNA-binding domain
866481042Hsp20/alpha crystallin family
1089109955Hsp70 protein
78989950KH domain
11SH2 domain
131614172819107SH3 domain
11101111121065Actin
71611182721100Ankyrin repeat
77777742ADP-ribosylation factor family
292436273851205Eukaryotic aspartyl protease
33333318Cyclic nucleotide-binding domain
211116Cytochrome c
479681044Double-stranded RNA binding motif
1218122EF hand
114Fe-4S binding domain
11Fibronectin type III domain
11Globin
7754111751Glutathione S-transferase, C-terminal domain
1112117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1171210151368Homeodomain
22222212lactate/malate dehydrogenase, NAD binding domain
65565532Myosin head (motor domain)
11214612815190212839Cytochrome P450
1421861641521772291,050Protein kinase domain
89117131159Pyridine nucleotide-disulphide oxidoreductase
242725252726154Ras family
88887847Response regulator receiver domain
26637529RNase H
596064606864375RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1111116Copper/zinc superoxide dismutase (SODC)
22222212Iron/manganese superoxide dismutases, alpha-hairpin domain
1310141231870Subtilase family
433653403435241Sugar (and other) transporter
910119101059Thioredoxin
55555530Tubulin/FtsZ family, GTPase domain
134von Willebrand factor type A domain
181919165526153Zinc finger, C2H2 type
55116739109Zinc finger, C3HC4 type (RING finger)
5411721856Zinc knuckle
22222212Protein-tyrosine phosphatase
6579698613088517short chain dehydrogenase
453631356837252Zinc-binding dehydrogenase
55555631Thiolase, N-terminal domain
32772324Beta-ketoacyl synthase, N-terminal domain
11213192Fe-2S iron-sulfur cluster binding domain
1111116Enolase, C-terminal TIM barrel domain
22Cytochrome C and Quinol oxidase polypeptide I
98888849Glutamine amidotransferase class-I
10111212101368TCP-1/cpn60 chaperonin family
35443423Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
17141713111789E1-E2 ATPase
171916171715101Core histone H2A/H2B/H3/H4
1214Copper binding proteins, plastocyanin/azurin family
789813651Alpha amylase, catalytic domain
45446528Phorbol esters/diacylglycerol binding domain (C1 domain)
44345626Bacterial transferase hexapeptide (six repeats)
44443423tRNA synthetases class I (I, L, M and V)
11101111111266Cyclin, N-terminal domain
1172210241993Carboxylesterase family
44444424DNA polymerase family B
33334319ATP synthase subunit C
393118943Peroxidase
11118113Beta-lactamase
44443423C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
272023243123148Calcineurin-like phosphoesterase
1415211491891Cellulase (glycosyl hydrolase family 5)
75555532tRNA synthetases class II (D, K and N)
343640363941226Mitochondrial carrier protein
112recA bacterial DNA recombination protein
15161417181898Aminotransferase class I and II
34446425Phosphoribosyl transferase domain
12151214121277Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
2111117Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1111116Chaperonin 10 Kd subunit
10131714161787C2 domain
786617852PH domain
1210111061059bZIP transcription factor
181917221724117Aldehyde dehydrogenase family
475754588853357Fungal Zn(2)-Cys(6) binuclear cluster domain
172226232823139Cytochrome b5-like Heme/Steroid binding domain
34119Oxidoreductase molybdopterin binding domain
86767640Oxidoreductase NAD-binding domain
303329232727169SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
222121222123130Ubiquitin-conjugating enzyme
67756536Isocitrate/isopropylmalate dehydrogenase
22221211Ribosomal Proteins L2, RNA binding domain
22222212Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
12223212Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
12132413Cupin
11Eukaryotic-type carbonic anhydrase
433333192-oxoacid dehydrogenases acyltransferase (catalytic domain)
35251319Catalase
1111116Disintegrin
2442214UDP-glucoronosyl and UDP-glucosyl transferase
55555530Aminotransferase class-III
22222212Ribosomal protein S19
1111116DNA gyrase B
24333318Thiamine pyrophosphate enzyme, central domain
33333621Lyase
12122210Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1112117Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
11312210Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
912911131064Kinesin motor domain
312832293436190DnaJ domain
14141414141484Proteasome subunit
43434422Major intrinsic protein
1111116ATP synthase
42323216Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
2111128Profilin
22222212Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
131421191320100Ubiquitin family
64555530Cofilin/tropomyosin-type actin-binding protein
2222221214-3-3 protein
11Alkaline phosphatase
1111116Zinc carboxypeptidase
443748445347273Aldo/keto reductase family
1079812753Myb-like DNA-binding domain
55555530Forkhead domain
22321212Ribosomal protein L16p/L10e
22222212Ribosomal protein S14p/S29e
33333318FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
22
63346527Flavodoxin
1111116Calreticulin family
2410481139Common central domain of tyrosinase
89896949Aminotransferase class-V
22328118Ribonucleotide reductase, small chain
525972547153361DEAD/DEAH box helicase
76931037911280543Helicase conserved C-terminal domain
211116Fructose-bisphosphate aldolase class-I
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22232213Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
35455729Pyridoxal-dependent decarboxylase conserved domain
84543428Citrate synthase, C-terminal domain
55756533GHMP kinases N terminal domain
65767738Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
76778742Pyridoxal-phosphate dependent enzyme
15151716151896NUDIX domain
44445526pfkB family carbohydrate kinase
357510434Glycosyl hydrolases family 28
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
67868843Histidine phosphatase superfamily (branch 1)
1111127Thymidylate synthase
44444424ATP synthase alpha/beta chain, C terminal domain
44444525Calponin homology (CH) domain
22225215Glutamine amidotransferases class-II
22222212Ribosomal protein S15
12426217Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22122211SRF-type transcription factor (DNA-binding and dimerisation domain)
108109101057GATA zinc finger
65136271269Amino acid permease
648751141Prolyl oligopeptidase family
22221312Ribosomal protein L30p/L7e
107108101055Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44855430Aconitase family (aconitate hydratase)
14342519Glycosyl hydrolase family 10
1111116Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
22232213Nucleoside diphosphate kinase
22432417Tetraspanin family
22Galactoside-binding lectin
22222313Ribosomal protein S10p/S20e
32333317Arrestin (or S-antigen), N-terminal domain
1112218Phosphoglucose isomerase
1211117Carbohydrate phosphorylase
1111116SecY translocase
1113118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
47384531Polyprenyl synthetase
22222212Hexokinase
1271067951Dynamin family
11322110Transcription factor TFIID (or TATA-binding protein, TBP)
33433420Rieske [2Fe-2S] domain
111115Phytochrome region
11Proton-conducting membrane transporter
98878949Biotin-requiring enzyme
2111117Phosphofructokinase
12222211Ribosomal protein S17
1161110Hydroxymethylglutaryl-coenzyme A reductase
43335321FGGY family of carbohydrate kinases, N-terminal domain
788891050Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22223213Transcription factor TFIIB repeat
66777740Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
698819757Chromo (CHRromatin Organisation MOdifier) domain
22222313Phosphatidylinositol-specific phospholipase C, Y domain
34342521Phosphatidylinositol-specific phospholipase C, X domain
846571040D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
43333319Malic enzyme, N-terminal domain
21111176-phosphogluconate dehydrogenase, C-terminal domain
1694761254Multicopper oxidase
81081012856WW domain
23222213Ribosomal RNA adenine dimethylase
120122143125137125772WD domain, G-beta repeat
33333318Heavy-metal-associated domain
33333318Adenylate kinase
23231213Phosphoglucomutase/phosphomannomutase, C-terminal domain
22221211Ribosomal protein S8
22224315Ribosomal protein S11
76666637LIM domain
35453525Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
22222212chorismate binding enzyme
2333331760s Acidic ribosomal protein
45454628Prenyltransferase and squalene oxidase repeat
53438427Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
10101010111061Bromodomain
7101210111060Acyl-CoA dehydrogenase, C-terminal domain
15151515141589Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
32425319Ribonuclease T2 family
44644426HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
13141010141475Serine carboxypeptidase
88888848Phosphatidylinositol 3- and 4-kinase
22223213Transketolase, thiamine diphosphate binding domain
11Glycosyl hydrolases family 11
22222111Inositol monophosphatase family
55554630Glutaredoxin
22223213Isocitrate lyase family
1111116Serine hydroxymethyltransferase
22322213Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
54445527KOW motif
1111116Ribosomal protein L34
111115Ribosomal protein L33
32332316RF-1 domain
43536324Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
79698948Protein phosphatase 2C
34343320Nucleotidyl transferase
24444927Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
7151313151477Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
44446426Arginase family
66666636MCM P-loop domain
22222414Squalene/phytoene synthase
11139129963FHA domain
242535343245195AMP-binding enzyme
13131414141482G-protein alpha subunit
141515152715101HMG (high mobility group) box
45544527His Kinase A (phospho-acceptor) domain
34463323Armadillo/beta-catenin-like repeat
161320173521122Tetratricopeptide repeat
23333418Ion transport protein
1111127DNA gyrase/topoisomerase IV, subunit A
54489737BRCA1 C Terminus (BRCT) domain
65456430Glycosyl transferases group 1
31324316Glycosyl transferase family 2
1221118SAM domain (Sterile alpha motif)
33334117linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
11Pectate lyase
1135ribonuclease
1111116Urease, gamma subunit
33333318CoA-ligase
66131061152Phosphopantetheine attachment site
22223213Formyl transferase
11101010101061Metallopeptidase family M24
232413428Leucine Rich Repeat
696743879alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
55564530PB1 domain
24222214Staphylococcal nuclease homologue
1212131291270Rab-GTPase-TBC domain
1311118Tudor domain
12221210WH1 domain
33345321Zinc finger, ZZ type
1111116HRDC domain
676710743CBS domain
22322213Ribosomal protein L13
23222213Ribosomal protein L4/L1 family
1111116Clp protease
44444424S1 RNA binding domain
111115HIUase/Transthyretin family
43435423AhpC/TSA family
45444425tRNA synthetases class I (W and Y)
22121210UvrD/REP helicase N-terminal domain
791095747Rhodanese-like domain
22222212Universal stress protein family
181618164326137Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
53556529tRNA synthetase class II core domain (G, H, P, S and T)
22322213Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
21324517Class II Aldolase and Adducin N-terminal domain
44443423Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55555530Fes/CIP4, and EFC/F-BAR homology domain
22225215IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
22223112Phospholipase D Active site motif
24341317Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
10810871154RasGEF domain
97979950RasGEF N-terminal motif
13131213141277RhoGAP domain
18141515131489RhoGEF domain
54454426SPRY domain
39333324RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
42425522Gelsolin repeat
77667639UBA/TS-N domain
12151517191593PHD-finger
1112128GGL domain
56665533HECT-domain (ubiquitin-transferase)
1111127Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
23339525Ribonuclease III domain
45442322Region in Clathrin and VPS
44443322RanBP1 domain
1121218PPIC-type PPIASE domain
12314314Zn-finger in Ran binding protein and others
12101811241489Zinc finger C-x8-C-x5-C-x3-H type (and similar)
2111117B-box zinc finger
34563425Poly(ADP-ribose) polymerase catalytic domain
12222211Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
20917815021225F-box domain
1111116Elongation factor 1 gamma, conserved domain
11114Calpain family cysteine protease
22222212Copper fist DNA binding domain
67776740CRAL/TRIO domain
212730313040179BTB/POZ domain
415Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
33333318Voltage gated chloride channel
881186950Caspase domain
55446832GDSL-like Lipase/Acylhydrolase
1111217Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
142015192616110ABC transporter transmembrane region
22Integrase core domain
63334423FAD binding domain
111159Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222212ribosomal L5P family C-terminus
55556531Insulinase (Peptidase family M16)
44444424Dehydrogenase E1 component
1111116Lumazine binding domain
66667637Elongation factor G C-terminus
44464527HMGL-like
34444423DnaJ central domain
22627221Starch binding domain
33433420Ribosomal protein L1p/L10e family
65854634Cation transporting ATPase, C-terminus
85946941Cation transporter/ATPase, N-terminus
111115dUTPase
44344423Aconitase C-terminal domain
33333318Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
23832321Acyl transferase domain
1111116Urease beta subunit
22222212Dihydrodipicolinate synthetase family
12111611271592haloacid dehalogenase-like hydrolase
1112128Glycosyl hydrolases family 2
588781551Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
111115Translation initiation factor IF-3, C-terminal domain
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
32323316Peptidase S24-like
1121117Inorganic pyrophosphatase
813111261363Glycosyl hydrolases family 16
22525319Glycosyl hydrolases family 15
171611203122117NADH:flavin oxidoreductase / NADH oxidase family
11111163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
13433418Glycosyl hydrolase family 20, catalytic domain
54547631HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
163132361842175GMC oxidoreductase
22222212Asparagine synthase
2692292692Fungal cellulose binding domain
66667637Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
87455736Flavin-binding monooxygenase-like
34333420tRNA synthetases class I (E and Q), catalytic domain
12141110tRNA synthetases class I (R)
64535427XPG N-terminal domain
77107131357Metallo-beta-lactamase superfamily
12216F5/8 type C domain
44444424Choline/Carnitine o-acyltransferase
1111116Putative esterase
1111116Glycosyl hydrolase family 9
1111217Ferrochelatase
12222211Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1121117Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
11213311Dioxygenase
76554734CNH domain
22222212Diacylglycerol kinase catalytic domain
13101312131576Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
44334220P21-Rho-binding domain
15141615141589PX domain
32323417Ras association (RalGDS/AF-6) domain
44443423UBX domain
55555530VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
46464630Carbon-nitrogen hydrolase
112N-acetyltransferase
11Geminivirus Rep catalytic domain
1111116Prephenate dehydratase
44445324Syntaxin
44445425Pumilio-family RNA binding repeat
77678641Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
1111116ER lumen protein retaining receptor
22222212tRNA N6-adenosine threonylcarbamoyltransferase
1111116Histidinol dehydrogenase
33333318impB/mucB/samB family
11
1113118Ribosomal L15
33331316Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
111115Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
571619Glycosyl hydrolase family 7
11Hantavirus nucleocapsid protein
23222213RNA pseudouridylate synthase
65667636Histone deacetylase domain
13213212POT family
22222212PWWP domain
181919162143136SET domain
33535423Isochorismatase family
21223212Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
76677639XPG I-region
111115Acetokinase family
1111217DNA photolyase
111115Cation-independent mannose-6-phosphate receptor repeat
1111116Cytosol aminopeptidase family, catalytic domain
11Sulfatase
11141196,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
33333217Acyl CoA binding protein
55565531Cullin family
1111116Elongation factor TS
34457427FAD binding domain
11141114131578O-methyltransferase domain
56644631EamA-like transporter family
22
89878949ThiF family
1111116Ribosomal family S4e
21112310Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
33242216Ammonium Transporter Family
33334319Sulfate permease family
1111116MATH domain
22222212Dehydratase family
32323417Transaldolase/Fructose-6-phosphate aldolase
33333318Mechanosensitive ion channel
22221211GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
43454424Adaptor complexes medium subunit family
78988747Exonuclease
1121117Dipeptidyl peptidase IV (DPP IV) N-terminal region
1258934NB-ARC domain
678710947Glycosyl hydrolase family 3 N terminal domain
111115Ribosomal protein L44
111115Sodium:sulfate symporter transmembrane region
1111228DNA-dependent RNA polymerase
2111117Glycosyl transferase family 4
1111116HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
44444525Synaptobrevin
2111117GMP synthase C terminal domain
33333318Adenosine/AMP deaminase
33533219Oxidoreductase FAD-binding domain
13451418Thioesterase domain
22222212Histidine biosynthesis protein
65445327Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
224PAS fold
32222213Probable molybdopterin binding domain
44444424Sec1 family
23222213GDP dissociation inhibitor
58686740Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
34444423Initiation factor 2 subunit family
11PQQ enzyme repeat
22222212Electron transfer flavoprotein domain
1113118Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
32222213Gamma-glutamyltranspeptidase
111115Ribosomal L40e family
1111116GrpE
32322416TatD related DNase
22222212Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
87863537Dynamin central region
11111166-O-methylguanine DNA methyltransferase, DNA binding domain
25131214Bacteriorhodopsin-like protein
22322314Carboxyl transferase domain
7118861151UbiA prenyltransferase family
34455526Endoribonuclease L-PSP
2335316Phosphorylase superfamily
11Mannose-6-phosphate isomerase
55855836Cys/Met metabolism PLP-dependent enzyme
3474