PFAM Domains • Loramyces juncicola 46458 v1.0
Annotations/GenomesAscsa1Cadsp1Chalo1Glalo1Lorju1Marbr1Melbi2Melva1Rhier1TotalAnnotation Description
PFAMs
8,06814,03212,9829,2009,6497,17511,47113,38410,11596,076
111147 transmembrane receptor (rhodopsin family)
526771596038756856546ATPase family associated with various cellular activities (AAA)
478284505733647155543ABC transporter
44444444436ATP synthase alpha/beta family, nucleotide-binding domain
141614141514141414129Elongation factor Tu GTP binding domain
141819131310162019142Helix-loop-helix DNA-binding domain
49565345546Hsp20/alpha crystallin family
712799887875Hsp70 protein
91312101111101212100KH domain
111111118SH2 domain
222727242322292627227SH3 domain
10101011101010101091Actin
81194183105103272552071551,310Ankyrin repeat
36641166437PAN domain
87777777764ADP-ribosylation factor family
132650182910244227239Eukaryotic aspartyl protease
45444444437Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11211111110Cytochrome c
22323232322Double-stranded RNA binding motif
172421191919172120177EF hand
211212111124Fe-4S binding domain
28421223226Fibronectin type III domain
1113Globin
132631132211213121189Glutathione S-transferase, C-terminal domain
11111123112Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
112Hemopexin
61311777811878Homeodomain
24323243326lactate/malate dehydrogenase, NAD binding domain
55556546546Myosin head (motor domain)
44214232131155461682211131,324Cytochrome P450
1201901551391301041801591581,335Protein kinase domain
203833201914253721227Pyridine nucleotide-disulphide oxidoreductase
233429252623333028251Ras family
182931203018253027228Response regulator receiver domain
6153336440RNase H
626966626363686861582RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11718Reverse transcriptase (RNA-dependent DNA polymerase)
11114Serpin (serine protease inhibitor)
22222222218Copper/zinc superoxide dismutase (SODC)
12112212315Iron/manganese superoxide dismutases, alpha-hairpin domain
536191013813178129Subtilase family
612061596880461381901041,052Sugar (and other) transporter
121316111312141413118Thioredoxin
13123322219Trypsin
44444444436Tubulin/FtsZ family, GTPase domain
35665296547von Willebrand factor type A domain
66148151727155139145116963Zinc finger, C2H2 type
486559565142597151502Zinc finger, C3HC4 type (RING finger)
88117612860Zinc knuckle
32322222220Protein-tyrosine phosphatase
11Somatotropin hormone family
133303271150133671752641361,632short chain dehydrogenase
571441358571369413361816Zinc-binding dehydrogenase
68777677762Thiolase, N-terminal domain
52530342810322013197Beta-ketoacyl synthase, N-terminal domain
388654888582Fe-2S iron-sulfur cluster binding domain
112Papain family cysteine protease
31212122216Enolase, C-terminal TIM barrel domain
910899878876Glutamine amidotransferase class-I
10111010101010101091TCP-1/cpn60 chaperonin family
37533456440Glutamine synthetase, catalytic domain
12222222217Triosephosphate isomerase
132318141915231917161E1-E2 ATPase
81010881698885Core histone H2A/H2B/H3/H4
211116Copper binding proteins, plastocyanin/azurin family
678585710763Alpha amylase, catalytic domain
22231222218Phorbol esters/diacylglycerol binding domain (C1 domain)
777107889770Bacterial transferase hexapeptide (six repeats)
33333333327tRNA synthetases class I (I, L, M and V)
611777767765Cyclin, N-terminal domain
178358222921436230365Carboxylesterase family
444434427DNA polymerase family B
56646566650ATP synthase subunit C
49676555451Peroxidase
633297172252614159Beta-lactamase
45623445841C-5 cytosine-specific DNA methylase
272934243121353629266Calcineurin-like phosphoesterase
162632132011192719183Cellulase (glycosyl hydrolase family 5)
78777778866tRNA synthetases class II (D, K and N)
364741384036414141361Mitochondrial carrier protein
11111117recA bacterial DNA recombination protein
122620151912162014154Aminotransferase class I and II
61011998119982Phosphoribosyl transferase domain
10101010101010101090Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111119Phosphoglycerate kinase
22222222218Ribosomal protein S4/S9 N-terminal domain
22222222218Ribosomal protein S12/S23
111111118Bacterial regulatory helix-turn-helix proteins, AraC family
1111111119Chaperonin 10 Kd subunit
101916151115141613129C2 domain
191919181919191919170PH domain
81210101191111991bZIP transcription factor
163629212115263820222Aldehyde dehydrogenase family
180483527191250923295542582,864Fungal Zn(2)-Cys(6) binuclear cluster domain
203327202619252624220Cytochrome b5-like Heme/Steroid binding domain
16334233328Oxidoreductase molybdopterin binding domain
132520151511171815149Oxidoreductase NAD-binding domain
303331303124423837296SNF2 family N-terminal domain
21222222217Ribosomal protein S7p/S5e
222424222021272524209Ubiquitin-conjugating enzyme
610777779767Isocitrate/isopropylmalate dehydrogenase
22222222218Ribosomal Proteins L2, RNA binding domain
1111111119Hsp90 protein
22222222218Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
21111121111Dihydrofolate reductase
51015612589373Chitin recognition protein
36534346438Cysteine-rich secretory protein family
1111111119Ribosomal protein S3, C-terminal domain
13741245541Cupin
21222222217Annexin
41313214Eukaryotic-type carbonic anhydrase
12111121111Chalcone and stilbene synthases, N-terminal domain
333343434302-oxoacid dehydrogenases acyltransferase (catalytic domain)
4810842711862Catalase
12211222114Disintegrin
24614147231UDP-glucoronosyl and UDP-glucosyl transferase
71787881310785Aminotransferase class-III
22212222217Ribosomal protein S19
1111111119DNA gyrase B
7128577910974Thiamine pyrophosphate enzyme, central domain
34544354436Lyase
22222233220Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
12211122214Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
12221112113Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111119Indole-3-glycerol phosphate synthase
22311110Aromatic amino acid lyase
11211111110Pyruvate kinase, barrel domain
101212101110121112100Kinesin motor domain
333731313629353432298DnaJ domain
141414141414141414126Proteasome subunit
6141391081013891Major intrinsic protein
1111111119ATP synthase
48434345439Glycosyl hydrolase family 1
11111111193'5'-cyclic nucleotide phosphodiesterase
1111111119Profilin
11121111110Ribosomal protein L22p/L17e
22212222217Ribosomal protein L14p/L23e
132122121314172321156Ubiquitin family
55555555545Cofilin/tropomyosin-type actin-binding protein
2222322221914-3-3 protein
26465433235Alkaline phosphatase
14142411119Zinc carboxypeptidase
328155333821496540414Aldo/keto reductase family
161617171613171819149Myb-like DNA-binding domain
44443454436Forkhead domain
16234134428Glycosyl hydrolases family 32 N-terminal domain
1111111119Ribosomal protein L16p/L10e
22122221216Ribosomal protein S14p/S29e
35533345334FKBP-type peptidyl-prolyl cis-trans isomerase
1111111119Glutathione peroxidase
22222222218
11Dehydrin
61212896811981Flavodoxin
1111111119Calreticulin family
5182017141211177121Common central domain of tyrosinase
1011121010911131096Aminotransferase class-V
1111111119Ribonucleotide reductase, small chain
434742404141424443383DEAD/DEAH box helicase
838886858078919291774Helicase conserved C-terminal domain
21111121111EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
12222222217Ribosomal protein L23
1111111119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22222222218Ribosomal protein L5
68667488659Pyridoxal-dependent decarboxylase conserved domain
35222232223Citrate synthase, C-terminal domain
55756555548GHMP kinases N terminal domain
58878579764Biotin carboxylase, N-terminal domain
1111111119Tryptophan synthase alpha chain
1015119111011101097Pyridoxal-phosphate dependent enzyme
152619181815212319174NUDIX domain
55545475545pfkB family carbohydrate kinase
82022695162213121Glycosyl hydrolases family 28
243111315Luciferase-like monooxygenase
22222222218Ribosomal protein L3
22222222218Ribosomal protein L11, RNA binding domain
182219171615172214160Histidine phosphatase superfamily (branch 1)
1111111119Thymidylate synthase
321111110Lipoxygenase
44444444436ATP synthase alpha/beta chain, C terminal domain
55556555546Calponin homology (CH) domain
56646444443Glutamine amidotransferases class-II
22222222218Ribosomal protein S15
21322123117Thaumatin family
11111112110Fructose-1-6-bisphosphatase, N-terminal domain
11211112111Ribonucleotide reductase, all-alpha domain
22222222218Ribosomal protein S2
211223264335SRF-type transcription factor (DNA-binding and dimerisation domain)
989886118976GATA zinc finger
397064475031615745464Amino acid permease
45853235439Prolyl oligopeptidase family
22212112215Ribosomal protein L30p/L7e
912131111812131099Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
57554449548Aconitase family (aconitate hydratase)
48776445247Glycosyl hydrolase family 10
44564443438Glycosyl hydrolases family 17
22222222218Ribosomal protein S5, N-terminal domain
12111111110Nucleoside diphosphate kinase
1113Tetraspanin family
22222122217Ribosomal protein S10p/S20e
45735459547Arrestin (or S-antigen), N-terminal domain
1111111119Phosphoglucose isomerase
1111111119Carbohydrate phosphorylase
1111111119SecY translocase
12111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222222218Ribosomal protein L6
43343433431Polyprenyl synthetase
54454354438Hexokinase
1113910125119686Dynamin family
1111111119Transcription factor TFIID (or TATA-binding protein, TBP)
46545255642Rieske [2Fe-2S] domain
134311316Phytochrome region
11Proton-conducting membrane transporter
7111071071011982Biotin-requiring enzyme
1111111119Phosphofructokinase
22222222218Ribosomal protein S17
22111221113Hydroxymethylglutaryl-coenzyme A reductase
44444445437FGGY family of carbohydrate kinases, N-terminal domain
112Sodium:dicarboxylate symporter family
9241811148162012132Enoyl-CoA hydratase/isomerase
22222222218Ribosomal protein S9/S16
22222222218Transcription factor TFIIB repeat
812108981011985Cytidine and deoxycytidylate deaminase zinc-binding region
11112111110Molybdopterin oxidoreductase
71286671181479Chromo (CHRromatin Organisation MOdifier) domain
33332332224Phosphatidylinositol-specific phospholipase C, Y domain
43333332226Phosphatidylinositol-specific phospholipase C, X domain
916968611111187D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
33333233326Malic enzyme, N-terminal domain
232221222186-phosphogluconate dehydrogenase, C-terminal domain
8272911258322616182Multicopper oxidase
11Granulin
812151010810141097WW domain
1111111119Ribosomal RNA adenine dimethylase
11122211112Yeast PIR protein repeat
1101631131091261011351221321,111WD domain, G-beta repeat
58745596655Heavy-metal-associated domain
45334544436Adenylate kinase
22222322219Phosphoglucomutase/phosphomannomutase, C-terminal domain
22122211114Ribosomal protein S8
11121111110Ribosomal protein S11
44445444437LIM domain
314Matrixin
33413233325Regulator of chromosome condensation (RCC1) repeat
22212222217Ribosomal protein S13/S18
22223233322chorismate binding enzyme
3433333332860s Acidic ribosomal protein
44445454539Prenyltransferase and squalene oxidase repeat
68574655652Protein kinase C terminal domain
1111111119Single-strand binding protein family
1111111119S-adenosylmethionine synthetase, N-terminal domain
710988898875Bromodomain
11211512158131614125Acyl-CoA dehydrogenase, C-terminal domain
151515151515151615136Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
34345344333Ribonuclease T2 family
33433333328HSF-type DNA-binding
22222222218SRP54-type protein, GTPase domain
1111111119Urease alpha-subunit, N-terminal domain
91922810516208117Serine carboxypeptidase
11Apoptosis regulator proteins, Bcl-2 family
88888888872Phosphatidylinositol 3- and 4-kinase
36333143329Transketolase, thiamine diphosphate binding domain
24837258443Glycosyl hydrolases family 11
33434333329Inositol monophosphatase family
44444444436Glutaredoxin
39545257343Isocitrate lyase family
24223222221Serine hydroxymethyltransferase
53523345636Iron-containing alcohol dehydrogenase
22222222218Ribosomal protein L10
42332322223KOW motif
11111117Ribosomal protein L34
22222222218RF-1 domain
36422244431Sodium:solute symporter family
11111121110Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
1111111119IMP dehydrogenase / GMP reductase domain
1111111119Glucose-6-phosphate dehydrogenase, NAD binding domain
77765666757Protein phosphatase 2C
22332232322Nucleotidyl transferase
571365289863Carbonic anhydrase
1111111119Phosphoribulokinase / Uridine kinase family
712951071010878Fatty acid desaturase
66666666654MutS domain V
1111111119Delta-aminolevulinic acid dehydratase
56854356648Arginase family
66666666654MCM P-loop domain
32223232221Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
1181099101010986FHA domain
307365516825636547487AMP-binding enzyme
33644345638G-protein alpha subunit
811898788875HMG (high mobility group) box
152627172515222523195His Kinase A (phospho-acceptor) domain
33333333327Armadillo/beta-catenin-like repeat
344433293223463342316Tetratricopeptide repeat
23533245431Ion transport protein
1111111119DNA gyrase/topoisomerase IV, subunit A
111211111211111111101BRCA1 C Terminus (BRCT) domain
610987999673Glycosyl transferases group 1
39725378448Glycosyl transferase family 2
29313344433SAM domain (Sterile alpha motif)
1111111119linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
1161639137Pectate lyase
11411112214ribonuclease
1111111119Urease, gamma subunit
44544446439CoA-ligase
112226292610291916188Phosphopantetheine attachment site
33333343328Formyl transferase
9111099710111187Metallopeptidase family M24
121718141513171717140Leucine Rich Repeat
4791108404830519148554alpha/beta hydrolase fold
33333333327RNA polymerase Rpb2, domain 6
33443444433PB1 domain
23232222220Staphylococcal nuclease homologue
1011101010910101191Rab-GTPase-TBC domain
1111111119Tudor domain
1111111119WH1 domain
54775464446Zinc finger, ZZ type
11111139HRDC domain
9111089101010986CBS domain
22222222218Ribosomal protein L13
22222222218Ribosomal protein L4/L1 family
1111111119Clp protease
43553433333S1 RNA binding domain
1111111119HIUase/Transthyretin family
34736387546AhpC/TSA family
44454554439tRNA synthetases class I (W and Y)
12211221113UvrD/REP helicase N-terminal domain
47455655647Rhodanese-like domain
22222332220Universal stress protein family
477694535728699555574Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
1111111119C-terminal regulatory domain of Threonine dehydratase
23222222320AIR synthase related protein, N-terminal domain
989108999879tRNA synthetase class II core domain (G, H, P, S and T)
1111111119SpoU rRNA Methylase family
22222222218Tetrapyrrole (Corrin/Porphyrin) Methylases
1111111119Glycosyl transferase family, a/b domain
12111111110PDZ domain
314755457555Class II Aldolase and Adducin N-terminal domain
44444444436Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55555555545Fes/CIP4, and EFC/F-BAR homology domain
56447544544IQ calmodulin-binding motif
22222222218Phosphoinositide 3-kinase family, accessory domain (PIK domain)
57656476551Phospholipase D Active site motif
12212112214Regulator of G protein signaling domain
44444444436GTPase-activator protein for Ras-like GTPase
47444454440RasGEF domain
46444454439RasGEF N-terminal motif
899888891077RhoGAP domain
66566676755RhoGEF domain
33553333432SPRY domain
33333333428RNA polymerase Rpb1, domain 2
22222222218Guanylate kinase
45445544338Gelsolin repeat
75596646553UBA/TS-N domain
182321181914212322179PHD-finger
1111111119GGL domain
66666666654HECT-domain (ubiquitin-transferase)
22222222218Helix-hairpin-helix motif
12111211212MSP (Major sperm protein) domain
36643557645Ribonuclease III domain
22323222220Region in Clathrin and VPS
33333333327RanBP1 domain
22222222218PPIC-type PPIASE domain
34534334433Zn-finger in Ran binding protein and others
201822171714252120174Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1242233320Poly(ADP-ribose) polymerase catalytic domain
1111111119Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
5393836265397510081651F-box domain
1111111119Elongation factor 1 gamma, conserved domain
35633264638Calpain family cysteine protease
3325323324Copper fist DNA binding domain
56555555546CRAL/TRIO domain
214746211218324933279BTB/POZ domain
3644157434Ricin-type beta-trefoil lectin domain
12111111110Inhibitor of Apoptosis domain
34443344433Voltage gated chloride channel
248242104642Caspase domain
103117191312181812150GDSL-like Lipase/Acylhydrolase
1111111119Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
204053242715314127278ABC transporter transmembrane region
1111Integrase core domain
512876577865FAD binding domain
4111113143107477Condensation domain
1111111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111111119HAMP domain
22232222219ribosomal L5P family C-terminus
66656466651Insulinase (Peptidase family M16)
33333344329Dehydrogenase E1 component
1111111119Lumazine binding domain
66666666654Elongation factor G C-terminus
45555445542HMGL-like
44444444436DnaJ central domain
32324234427Starch binding domain
22222233422Ribosomal protein L1p/L10e family
61297971210981Cation transporting ATPase, C-terminus
81410913811131096Cation transporter/ATPase, N-terminus
12211122113dUTPase
575544410549Aconitase C-terminal domain
33333333327Amino acid kinase family
1111111119N-(5'phosphoribosyl)anthranilate (PRA) isomerase