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PFAM Domains • Spathularia flavida
Annotations/GenomesAmore1Botci1Chalo1Melbi2Melva1Oidma1Sclsc1Spafl1TotalAnnotation Description
PFAMs
7,3267,96112,98211,47113,38412,2697,9578,21281,562
1127 transmembrane receptor (rhodopsin family)
4046717568593954452ATPase family associated with various cellular activities (AAA)
3652846471754546473ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
1412141414141414110Elongation factor Tu GTP binding domain
1091916201599107Helix-loop-helix DNA-binding domain
2254552227Hsp20/alpha crystallin family
8878797761Hsp70 protein
81012101289978KH domain
111111118SH2 domain
2423272926232328203SH3 domain
10710101010101077Actin
3266183255207148471031,041Ankyrin repeat
366654232PAN domain
7777777756ADP-ribosylation factor family
1216502442321017203Eukaryotic aspartyl protease
4444444432Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
112111119Cytochrome c
213322114Double-stranded RNA binding motif
1920211721182017153EF hand
12111122114Fe-4S binding domain
3242332221Fibronectin type III domain
11114Globin
715312131331215165Glutathione S-transferase, C-terminal domain
1212311112Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
771181177866Homeodomain
2234332322lactate/malate dehydrogenase, NAD binding domain
4554655539Myosin head (motor domain)
65114232168221170841291,183Cytochrome P450
120951551801591281081211,066Protein kinase domain
1419332537291411182Pyridine nucleotide-disulphide oxidoreductase
2321293330302524215Ras family
1621312530162216177Response regulator receiver domain
333359374RNase H
6358666868555867503RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1970190Reverse transcriptase (RNA-dependent DNA polymerase)
11125Serpin (serine protease inhibitor)
1222222114Copper/zinc superoxide dismutase (SODC)
2111231112Iron/manganese superoxide dismutases, alpha-hairpin domain
241913171351184Subtilase family
47701591381901545556869Sugar (and other) transporter
1191614141191195Thioredoxin
1112232113Trypsin
4544464435Tubulin/FtsZ family, GTPase domain
3269642133von Willebrand factor type A domain
5250151139145945446731Zinc finger, C2H2 type
4137595971483939393Zinc finger, C3HC4 type (RING finger)
7291156410126Zinc knuckle
3332233221Protein-tyrosine phosphatase
11Somatotropin hormone family
80108271175264256791031,336short chain dehydrogenase
4159135941331345466716Zinc-binding dehydrogenase
6577775549Thiolase, N-terminal domain
822303220502236220Beta-ketoacyl synthase, N-terminal domain
54888447482Fe-2S iron-sulfur cluster binding domain
112Papain family cysteine protease
1222231114Enolase, C-terminal TIM barrel domain
7887878962Glutamine amidotransferase class-I
101010101010101080TCP-1/cpn60 chaperonin family
3355653333Glutamine synthetase, catalytic domain
2122221214Triosephosphate isomerase
1414182319161212128E1-E2 ATPase
89109898869Core histone H2A/H2B/H3/H4
11125Copper binding proteins, plastocyanin/azurin family
488710591061Alpha amylase, catalytic domain
2222212215Phorbol esters/diacylglycerol binding domain (C1 domain)
88789971167Bacterial transferase hexapeptide (six repeats)
3533334327tRNA synthetases class I (I, L, M and V)
7676776854Cyclin, N-terminal domain
1137584362641623314Carboxylesterase family
45444425DNA polymerase family B
4466654540ATP synthase subunit C
3365553838Peroxidase
5629252637413145Beta-lactamase
4664545337C-5 cytosine-specific DNA methylase
2824343536302027234Calcineurin-like phosphoesterase
810321927171313139Cellulase (glycosyl hydrolase family 5)
7777897759tRNA synthetases class II (D, K and N)
3735414141423635308Mitochondrial carrier protein
11114recA bacterial DNA recombination protein
1420201620241419147Aminotransferase class I and II
7911119118874Phosphoribosyl transferase domain
101110101010101081Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2222222216Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
2111117Bacterial regulatory helix-turn-helix proteins, AraC family
111111118Chaperonin 10 Kd subunit
91016141698991C2 domain
1815191919171716140PH domain
107101111208885bZIP transcription factor
1815292638451315199Aldehyde dehydrogenase family
15210952732955446993932,326Fungal Zn(2)-Cys(6) binuclear cluster domain
2217272526372020194Cytochrome b5-like Heme/Steroid binding domain
2233322118Oxidoreductase molybdopterin binding domain
1614201718181110124Oxidoreductase NAD-binding domain
2427314238312529247SNF2 family N-terminal domain
2322222217Ribosomal protein S7p/S5e
2019242725222320180Ubiquitin-conjugating enzyme
6677995756Isocitrate/isopropylmalate dehydrogenase
2222212215Ribosomal Proteins L2, RNA binding domain
111111118Hsp90 protein
2222232217Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
2212111111Dihydrofolate reductase
35158937858Chitin recognition protein
2354623429Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
2374551532Cupin
2222221215Annexin
112116Eukaryotic-type carbonic anhydrase
111211119Chalcone and stilbene synthases, N-terminal domain
33343333252-oxoacid dehydrogenases acyltransferase (catalytic domain)
3710711118663Catalase
1122219Disintegrin
16471120UDP-glucoronosyl and UDP-glucosyl transferase
7681310156772Aminotransferase class-III
2222222115Ribosomal protein S19
111111118DNA gyrase B
448910144558Thiamine pyrophosphate enzyme, central domain
4355453332Lyase
2223332219Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1122221112Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
1121211211Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
112113312Aromatic amino acid lyase
112111119Pyruvate kinase, barrel domain
81112121110101084Kinesin motor domain
2831313534283230249DnaJ domain
1414141414141415113Proteasome subunit
31113101369974Major intrinsic protein
111111118ATP synthase
25445133440Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
111111118Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
1113221723121013121Ubiquitin family
5455545437Cofilin/tropomyosin-type actin-binding protein
222223121614-3-3 protein
2243322321Alkaline phosphatase
1311113112Zinc carboxypeptidase
2235554965682532351Aldo/keto reductase family
1615171718171416130Myb-like DNA-binding domain
4445434331Forkhead domain
22344116Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
2212122113Ribosomal protein S14p/S29e
3354533329FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
2222212215
9812811136673Flavodoxin
111111118Calreticulin family
4920111774678Common central domain of tyrosinase
76121113139980Aminotransferase class-V
111111118Ribonucleotide reductase, small chain
4239424244374041327DEAD/DEAH box helicase
7668869192817782653Helicase conserved C-terminal domain
11212119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
1311111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2222222216Ribosomal protein L5
65688136658Pyridoxal-dependent decarboxylase conserved domain
3223233422Citrate synthase, C-terminal domain
5575555542GHMP kinases N terminal domain
8787976658Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
98111110138878Pyridoxal-phosphate dependent enzyme
1211192123171111125NUDIX domain
5457554540pfkB family carbohydrate kinase
318221622211712131Glycosyl hydrolases family 28
141311112Luciferase-like monooxygenase
2222222216Ribosomal protein L3
2222222216Ribosomal protein L11, RNA binding domain
1514191722161613132Histidine phosphatase superfamily (branch 1)
111112119Thymidylate synthase
311229Lipoxygenase
4444444432ATP synthase alpha/beta chain, C terminal domain
5455545538Calponin homology (CH) domain
4464464436Glutamine amidotransferases class-II
2122222215Ribosomal protein S15
1232312115Thaumatin family
111121119Fructose-1-6-bisphosphatase, N-terminal domain
1121211110Ribonucleotide reductase, all-alpha domain
2222222216Ribosomal protein S2
3126453226SRF-type transcription factor (DNA-binding and dimerisation domain)
88911889869GATA zinc finger
3138646157543638379Amino acid permease
33835103439Prolyl oligopeptidase family
2121222214Ribosomal protein L30p/L7e
9101312139101086Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
5454964542Aconitase family (aconitate hydratase)
1274522427Glycosyl hydrolase family 10
4454335533Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
1113Tetraspanin family
2122221113Ribosomal protein S10p/S20e
53759104548Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
11111117SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
33333104332Polyprenyl synthetase
4545454435Hexokinase
34911974956Dynamin family
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
4455554436Rieske [2Fe-2S] domain
4138Phytochrome region
108101011108976Biotin-requiring enzyme
121111119Phosphofructokinase
2222222216Ribosomal protein S17
1112121110Hydroxymethylglutaryl-coenzyme A reductase
3344534329FGGY family of carbohydrate kinases, N-terminal domain
1111181620191212119Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
2222222216Transcription factor TFIIB repeat
8510101196766Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
7158118719681Chromo (CHRromatin Organisation MOdifier) domain
2133222217Phosphatidylinositol-specific phospholipase C, Y domain
3333222422Phosphatidylinositol-specific phospholipase C, X domain
849111174963D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
3333332222Malic enzyme, N-terminal domain
21222121136-phosphogluconate dehydrogenase, C-terminal domain
11122932262689153Multicopper oxidase
1110151014149992WW domain
111111118Ribosomal RNA adenine dimethylase
121111119Yeast PIR protein repeat
10698113135122146116112948WD domain, G-beta repeat
7479665347Heavy-metal-associated domain
11Transferrin
3434433428Adenylate kinase
2122232216Phosphoglucomutase/phosphomannomutase, C-terminal domain
2211122112Ribosomal protein S8
111111118Ribosomal protein S11
4444443431LIM domain
11Matrixin
2343323222Regulator of chromosome condensation (RCC1) repeat
2222222216Ribosomal protein S13/S18
11REV protein (anti-repression trans-activator protein)
2223332320chorismate binding enzyme
323333332360s Acidic ribosomal protein
4445454434Prenyltransferase and squalene oxidase repeat
6555553640Protein kinase C terminal domain
111111118Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
7799867659Bromodomain
131115131619913109Acyl-CoA dehydrogenase, C-terminal domain
1515151516151516122Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
2434453227Ribonuclease T2 family
3343333325HSF-type DNA-binding
2322222217SRP54-type protein, GTPase domain
111111118Urease alpha-subunit, N-terminal domain
91122162012910109Serine carboxypeptidase
11Apoptosis regulator proteins, Bcl-2 family
8888887863Phosphatidylinositol 3- and 4-kinase
1234341119Transketolase, thiamine diphosphate binding domain
285883438Glycosyl hydrolases family 11
2343343325Inositol monophosphatase family
4344434430Glutaredoxin
4455743436Isocitrate lyase family
2222222216Serine hydroxymethyltransferase
3254562229Iron-containing alcohol dehydrogenase
2222222216Ribosomal protein L10
2432224322KOW motif
1111116Ribosomal protein L34
2122222316RF-1 domain
6244431428Sodium:solute symporter family
111211119Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
5576655645Protein phosphatase 2C
2233222218Nucleotidyl transferase
441389112253Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
5791010116765Fatty acid desaturase
6666666648MutS domain V
111112119Delta-aminolevulinic acid dehydratase
6485654442Arginase family
6666666648MCM P-loop domain
1223212215Squalene/phytoene synthase
98101010751170FHA domain
3258656365754174473AMP-binding enzyme
3364533532G-protein alpha subunit
7888877861HMG (high mobility group) box
1117272225131512142His Kinase A (phospho-acceptor) domain
3333333324Armadillo/beta-catenin-like repeat
2426334633722632292Tetratricopeptide repeat
3454531227Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
991111111111982BRCA1 C Terminus (BRCT) domain
5599977556Glycosyl transferases group 1
5577875448Glycosyl transferase family 2
2134422220SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
71124116Pectate lyase
1141231114ribonuclease
111111118Urease, gamma subunit
6454644437CoA-ligase
826262919461944217Phosphopantetheine attachment site
2234323322Formyl transferase
1191010111010980Metallopeptidase family M24
1810181717141616126Leucine Rich Repeat
33351085191862850482alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
4444444432PB1 domain
2222222317Staphylococcal nuclease homologue
11710101010101179Rab-GTPase-TBC domain
111111118Tudor domain
111111118WH1 domain
3576444336Zinc finger, ZZ type
2111117HRDC domain
97101010108973CBS domain
2222222216Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
111111118Clp protease
3453334328S1 RNA binding domain
11111117HIUase/Transthyretin family
4678743443AhpC/TSA family
4445446435tRNA synthetases class I (W and Y)
212211110UvrD/REP helicase N-terminal domain
5445565640Rhodanese-like domain
2223221216Universal stress protein family
3536946995763141477Acetyltransferase (GNAT) family
211111119SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
99999107870tRNA synthetase class II core domain (G, H, P, S and T)
111111118SpoU rRNA Methylase family
2122222215Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
11111117PDZ domain
65757153654Class II Aldolase and Adducin N-terminal domain
4344444330Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
4455534535Fes/CIP4, and EFC/F-BAR homology domain
3644445535IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
4567644440Phospholipase D Active site motif
1221211111Regulator of G protein signaling domain
4444444432GTPase-activator protein for Ras-like GTPase
4445444433RasGEF domain
4445444433RasGEF N-terminal motif
8898988866RhoGAP domain
6557664645RhoGEF domain
3453333428SPRY domain
3333333324RNA polymerase Rpb1, domain 2
2122221113Guanylate kinase
5444443432Gelsolin repeat
61054689755UBA/TS-N domain
1715212123171616146PHD-finger
11Filamin/ABP280 repeat
11111117GGL domain
6666666547HECT-domain (ubiquitin-transferase)
3122233117Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
4665743338Ribonuclease III domain
2232221216Region in Clathrin and VPS
2333323322RanBP1 domain
2222221215PPIC-type PPIASE domain
4253443328Zn-finger in Ran binding protein and others
1915222521181613149Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1143311115Poly(ADP-ribose) polymerase catalytic domain
111111118Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
61408375100694032500F-box domain
111111118Elongation factor 1 gamma, conserved domain
4466454235Calpain family cysteine protease
3232332220Copper fist DNA binding domain
5455555539CRAL/TRIO domain
132346324951414196BTB/POZ domain
2165741430Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
3344433327Voltage gated chloride channel
32810441133Caspase domain
471718181998100GDSL-like Lipase/Acylhydrolase
111111118Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
1627533141412224255ABC transporter transmembrane region
2013455Integrase core domain
8787795657FAD binding domain
314111071772089Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111112119HAMP domain
2222222216ribosomal L5P family C-terminus
5566674645Insulinase (Peptidase family M16)
3334443327Dehydrogenase E1 component
11111117Lumazine binding domain
6566666647Elongation factor G C-terminus
5454564437HMGL-like
4444444432DnaJ central domain
2333423323Starch binding domain
2223322218Ribosomal protein L1p/L10e family
589121076562Cation transporting ATPase, C-terminus
7910111398774Cation transporter/ATPase, N-terminus
1122211111dUTPase
53541063440Aconitase C-terminal domain
4433343428Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
822302920501934212Acyl transferase domain
111111118Urease beta subunit
3366985444Dihydrodipicolinate synthetase family
2727424442402729278haloacid dehalogenase-like hydrolase
3213612141253Glycosyl hydrolases family 2
107232421271213137Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
111115Acylphosphatase
1121111210Adenylosuccinate synthetase
1211122111Asparaginase, N-terminal
3133222218Peptidase S24-like
111111118Inorganic pyrophosphatase
91117131610101096Glycosyl hydrolases family 16
3433344327Glycosyl hydrolases family 15
78191219105888NADH:flavin oxidoreductase / NADH oxidase family
41535411243-hydroxyacyl-CoA dehydrogenase, C-terminal domain
2143341220Glycosyl hydrolase family 20, catalytic domain
4444444432HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
927472636262130222GMC oxidoreductase
2222242218Asparagine synthase
214151317351719132Fungal cellulose binding domain
6555555642Septin
11212119EF-1 guanine nucleotide exchange domain
112111119Homoserine dehydrogenase
1244831124Flavin-binding monooxygenase-like
3345433328tRNA synthetases class I (E and Q), catalytic domain
2144441222tRNA synthetases class I (R)
4344543431XPG N-terminal domain
8112214272379121Metallo-beta-lactamase superfamily
21214111F5/8 type C domain
2324226324Choline/Carnitine o-acyltransferase
111111118Putative esterase
121111119Ferrochelatase
2222222216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1212131112Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
3333333324RNB domain
3511813105560Dioxygenase
2233352323CNH domain
1222333218Diacylglycerol kinase catalytic domain
7786886757Dual specificity phosphatase, catalytic domain
2223222217P21-Rho-binding domain
121011121211111190PX domain
3355643332Ras association (RalGDS/AF-6) domain
6456644540UBX domain
4444444432VHS domain
111111118Phosphoinositide 3-kinase C2
2232232218DAHP synthetase I family
14131313111010993Carbon-nitrogen hydrolase
13244115N-acetyltransferase