Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
PFAM Domains • Pichia kudriavzevii CBS573
Annotations/GenomesCanar1Dekbr2Hanpo2Isori2Issori2Issorie2Ogapa1Pickud1Picme2TotalAnnotation Description
PFAMs
5,1224,9105,0065,6585,6605,6756,2645,8914,88849,074
333232323232333232290ATPase family associated with various cellular activities (AAA)
282422302529233230243ABC transporter
44444444436ATP synthase alpha/beta family, nucleotide-binding domain
141414121413161414125Elongation factor Tu GTP binding domain
1010881091191085Helix-loop-helix DNA-binding domain
1121112110Hsp20/alpha crystallin family
99956999974Hsp70 protein
87866665860KH domain
11114SH2 domain
1817179910101018118SH3 domain
1010101110111111993Actin
151512443431373Ankyrin repeat
66643264542ADP-ribosylation factor family
955101210510874Eukaryotic aspartyl protease
34333333429Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
12111111110Cytochrome c
31222222218Double-stranded RNA binding motif
11111411111050EF hand
13111184Fe-4S binding domain
11Fibronectin type III domain
2312222216Globin
56668667858Glutathione S-transferase, C-terminal domain
12111111110Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
33523353431Homeodomain
33333333327lactate/malate dehydrogenase, NAD binding domain
22333334225Myosin head (motor domain)
64555555545Cytochrome P450
1019497959498999996873Protein kinase domain
7510656106762Pyridine nucleotide-disulphide oxidoreductase
211822191919221919178Ras family
63555545543Response regulator receiver domain
43222222120RNase H
525352424240464146414RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11810Reverse transcriptase (RNA-dependent DNA polymerase)
32222222219Copper/zinc superoxide dismutase (SODC)
1111111119Iron/manganese superoxide dismutases, alpha-hairpin domain
44433343432Subtilase family
302832191919341914214Sugar (and other) transporter
898777107770Thioredoxin
112Trypsin
33333333327Tubulin/FtsZ family, GTPase domain
413334151314191633218Zinc finger, C2H2 type
262826112130115Zinc finger, C3HC4 type (RING finger)
88211132329Zinc knuckle
22222222218Protein-tyrosine phosphatase
171525141413221317150short chain dehydrogenase
161619181817191816157Zinc-binding dehydrogenase
32222222219Thiolase, N-terminal domain
22222222218Beta-ketoacyl synthase, N-terminal domain
333211113182Fe-2S iron-sulfur cluster binding domain
1111111119Enolase, C-terminal TIM barrel domain
33Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
77798898871Glutamine amidotransferase class-I
1091010101010101089TCP-1/cpn60 chaperonin family
1111111119Glutamine synthetase, catalytic domain
1111111119Triosephosphate isomerase
99813131313139100E1-E2 ATPase
101096991091082Core histone H2A/H2B/H3/H4
16211121116Alpha amylase, catalytic domain
11111111311Phorbol esters/diacylglycerol binding domain (C1 domain)
55633353538Bacterial transferase hexapeptide (six repeats)
32465555338tRNA synthetases class I (I, L, M and V)
101010899119783Cyclin, N-terminal domain
122212212Carboxylesterase family
44444444436DNA polymerase family B
33333233326ATP synthase subunit C
22222222218Peroxidase
11114Beta-lactamase
11NADH dehydrogenase
212021151717201720168Calcineurin-like phosphoesterase
21144444125Cellulase (glycosyl hydrolase family 5)
66666666553tRNA synthetases class II (D, K and N)
323131303131323130279Mitochondrial carrier protein
131211131213131310110Aminotransferase class I and II
88844454853Phosphoribosyl transferase domain
810876786666Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111119Phosphoglycerate kinase
22222222218Ribosomal protein S4/S9 N-terminal domain
22222222218Ribosomal protein S12/S23
111115Bacterial regulatory helix-turn-helix proteins, AraC family
21211121112Chaperonin 10 Kd subunit
971155596663C2 domain
131213101010101012100PH domain
63655555545bZIP transcription factor
10101110111012111095Aldehyde dehydrogenase family
706273656361687080612Fungal Zn(2)-Cys(6) binuclear cluster domain
131514131213121312117Cytochrome b5-like Heme/Steroid binding domain
1214Oxidoreductase molybdopterin binding domain
79988888873Oxidoreductase NAD-binding domain
181916181718171919161SNF2 family N-terminal domain
23222222219Ribosomal protein S7p/S5e
141414141314141414125Ubiquitin-conjugating enzyme
66665666653Isocitrate/isopropylmalate dehydrogenase
32233323324Ribosomal Proteins L2, RNA binding domain
111111118Hsp90 protein
22222222218Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
22243423224Cysteine-rich secretory protein family
1111111119Ribosomal protein S3, C-terminal domain
11Trypsin and protease inhibitor
222222222182-oxoacid dehydrogenases acyltransferase (catalytic domain)
1111111119Catalase
1111116UDP-glucoronosyl and UDP-glucosyl transferase
105876687966Aminotransferase class-III
22112222216Ribosomal protein S19
1111111119DNA gyrase B
64544454440Thiamine pyrophosphate enzyme, central domain
43322333326Lyase
22222222218Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111111119Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111119Indole-3-glycerol phosphate synthase
1111111119Pyruvate kinase, barrel domain
94866586456Kinesin motor domain
242323232122232323205DnaJ domain
141413141514141414126Proteasome subunit
11111511113Major intrinsic protein
1111111119ATP synthase
11111111193'5'-cyclic nucleotide phosphodiesterase
1111111119Profilin
11222222115Ribosomal protein L22p/L17e
22222222218Ribosomal protein L14p/L23e
677585108763Ubiquitin family
34444444435Cofilin/tropomyosin-type actin-binding protein
111111111914-3-3 protein
12211111111Alkaline phosphatase
1111111119Zinc carboxypeptidase
151316121212161217125Aldo/keto reductase family
131414777671388Myb-like DNA-binding domain
33233233325Forkhead domain
11Glycosyl hydrolases family 32 N-terminal domain
11121322114Ribosomal protein L16p/L10e
22212212216Ribosomal protein S14p/S29e
32333333326FKBP-type peptidyl-prolyl cis-trans isomerase
1111111119Glutathione peroxidase
11114
67755545852Flavodoxin
1111111119Calreticulin family
55544454541Aminotransferase class-V
1111111119Ribonucleotide reductase, small chain
333231323633393933308DEAD/DEAH box helicase
565659535553565958505Helicase conserved C-terminal domain
1111111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222222218Ribosomal protein L23
1111111119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22122212216Ribosomal protein L5
33333333327Pyridoxal-dependent decarboxylase conserved domain
1111111119Citrate synthase, C-terminal domain
44344444435GHMP kinases N terminal domain
56567666653Biotin carboxylase, N-terminal domain
1111111119Tryptophan synthase alpha chain
55678868760Pyridoxal-phosphate dependent enzyme
77678677762NUDIX domain
33455545337pfkB family carbohydrate kinase
11Luciferase-like monooxygenase
22232222219Ribosomal protein L3
22222222218Ribosomal protein L11, RNA binding domain
121212810912101297Histidine phosphatase superfamily (branch 1)
1111111119Thymidylate synthase
44444444436ATP synthase alpha/beta chain, C terminal domain
55455555443Calponin homology (CH) domain
45432333431Glutamine amidotransferases class-II
22222222218Ribosomal protein S15
1111111119Fructose-1-6-bisphosphatase, N-terminal domain
22222222218Ribonucleotide reductase, all-alpha domain
22222222117Ribosomal protein S2
22222222218SRF-type transcription factor (DNA-binding and dimerisation domain)
78866686762GATA zinc finger
272529191917191830203Amino acid permease
22222222218Prolyl oligopeptidase family
31333333325Ribosomal protein L30p/L7e
44444454336Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444544437Aconitase family (aconitate hydratase)
24311141522Glycosyl hydrolases family 17
22222222218Ribosomal protein S5, N-terminal domain
1111111119Nucleoside diphosphate kinase
22222222218Ribosomal protein S10p/S20e
5122134321Arrestin (or S-antigen), N-terminal domain
1111111119Phosphoglucose isomerase
1111111119Carbohydrate phosphorylase
22122222217SecY translocase
1111111119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
34322232223Ribosomal protein L6
33333333327Polyprenyl synthetase
44344434333Hexokinase
33344444332Dynamin family
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
22422222220Rieske [2Fe-2S] domain
33Proton-conducting membrane transporter
67756576756Biotin-requiring enzyme
22222222218Phosphofructokinase
22222222218Ribosomal protein S17
1111111119Hydroxymethylglutaryl-coenzyme A reductase
44412242225FGGY family of carbohydrate kinases, N-terminal domain
32222222219Enoyl-CoA hydratase/isomerase
22222222218Ribosomal protein S9/S16
22222222218Transcription factor TFIIB repeat
76676746756Cytidine and deoxycytidylate deaminase zinc-binding region
1111111119Molybdopterin oxidoreductase
22222122217Chromo (CHRromatin Organisation MOdifier) domain
1111111119Phosphatidylinositol-specific phospholipase C, Y domain
12122222115Phosphatidylinositol-specific phospholipase C, X domain
64544454440D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1111111119Malic enzyme, N-terminal domain
11111111196-phosphogluconate dehydrogenase, C-terminal domain
23233313323Multicopper oxidase
54655555545WW domain
11122222114Ribosomal RNA adenine dimethylase
104444434340Yeast PIR protein repeat
879186747377878186742WD domain, G-beta repeat
34333343329Heavy-metal-associated domain
33433334329Adenylate kinase
32333333225Phosphoglucomutase/phosphomannomutase, C-terminal domain
33333333327Ribosomal protein S8
11122212113Ribosomal protein S11
33333333327LIM domain
11122242116Regulator of chromosome condensation (RCC1) repeat
22222222218Ribosomal protein S13/S18
22223222219chorismate binding enzyme
5455655554560s Acidic ribosomal protein
44444414433Prenyltransferase and squalene oxidase repeat
76644455647Protein kinase C terminal domain
1111111119Single-strand binding protein family
1111111119S-adenosylmethionine synthetase, N-terminal domain
999898991080Bromodomain
112Acyl-CoA dehydrogenase, C-terminal domain
151513131413141314124Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
1111111119Ribonuclease T2 family
44444444436HSF-type DNA-binding
22222222218SRP54-type protein, GTPase domain
32333333326Serine carboxypeptidase
78877787766Phosphatidylinositol 3- and 4-kinase
31311131115Transketolase, thiamine diphosphate binding domain
1111111119Inositol monophosphatase family
55555555545Glutaredoxin
11311131113Isocitrate lyase family
22222222218Serine hydroxymethyltransferase
22223231219Ribosomal protein L10
14322222220KOW motif
11114Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
32333333225RF-1 domain
33534353433Sodium:solute symporter family
12111111110Imidazoleglycerol-phosphate dehydratase
1111111119DNA polymerase family A
11122212113IMP dehydrogenase / GMP reductase domain
1111111119Glucose-6-phosphate dehydrogenase, NAD binding domain
66666666654Protein phosphatase 2C
22332333223Nucleotidyl transferase
1111111119Carbonic anhydrase
11122242116Phosphoribulokinase / Uridine kinase family
65666656753Fatty acid desaturase
65444444540MutS domain V
1111111119Delta-aminolevulinic acid dehydratase
35522242429Arginase family
66666666654MCM P-loop domain
11122222114Squalene/phytoene synthase
77788888768FHA domain
76766676657AMP-binding enzyme
22222222218G-protein alpha subunit
55655555546HMG (high mobility group) box
31232323322His Kinase A (phospho-acceptor) domain
22222222218Armadillo/beta-catenin-like repeat
12131610101081115105Tetratricopeptide repeat
22211121214Ion transport protein
1111111119DNA gyrase/topoisomerase IV, subunit A
109977697973BRCA1 C Terminus (BRCT) domain
44433333431Glycosyl transferases group 1
22222222218Glycosyl transferase family 2
11114SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
22222222218CoA-ligase
33333333327Phosphopantetheine attachment site
22222222218Formyl transferase
76888888768Metallopeptidase family M24
12101113212951Leucine Rich Repeat
171618777571498alpha/beta hydrolase fold
33333333327RNA polymerase Rpb2, domain 6
22211131114PB1 domain
22222222218Staphylococcal nuclease homologue
66778898766Rab-GTPase-TBC domain
1111111119Tudor domain
1111111119WH1 domain
22211121214Zinc finger, ZZ type
1111111119HRDC domain
76777766760CBS domain
22222222218Ribosomal protein L13
21222222116Ribosomal protein L4/L1 family
33334344330S1 RNA binding domain
111111118HIUase/Transthyretin family
44443444435AhpC/TSA family
44444444436tRNA synthetases class I (W and Y)
12311122215UvrD/REP helicase N-terminal domain
55566656347Rhodanese-like domain
21222222116Universal stress protein family
11910888681179Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
11112212213C-terminal regulatory domain of Threonine dehydratase
22222222218AIR synthase related protein, N-terminal domain
88877777867tRNA synthetase class II core domain (G, H, P, S and T)
22122212216SpoU rRNA Methylase family
22222222218Tetrapyrrole (Corrin/Porphyrin) Methylases
1111111119Glycosyl transferase family, a/b domain
1214PDZ domain
32322232726Class II Aldolase and Adducin N-terminal domain
32233333224Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
23232333324Fes/CIP4, and EFC/F-BAR homology domain
2322222217IQ calmodulin-binding motif
22222222218Phosphoinositide 3-kinase family, accessory domain (PIK domain)
22211111213Phospholipase D Active site motif
12224213Regulator of G protein signaling domain
33233333225GTPase-activator protein for Ras-like GTPase
44444444436RasGEF domain
44445444437RasGEF N-terminal motif
87778787766RhoGAP domain
32243343226RhoGEF domain
34433333329SPRY domain
33333333327RNA polymerase Rpb1, domain 2
1111111119Guanylate kinase
43433233328Gelsolin repeat
76655575753UBA/TS-N domain
141210981012101196PHD-finger
111111118GGL domain
55555555545HECT-domain (ubiquitin-transferase)
112Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
33222212522Ribonuclease III domain
32355545335Region in Clathrin and VPS
23333233325RanBP1 domain
111111118PPIC-type PPIASE domain
11112111110Zn-finger in Ran binding protein and others
9810887761073Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11114B-box zinc finger
141571111150F-box domain
1111111119Elongation factor 1 gamma, conserved domain
1113Calpain family cysteine protease
2222212215Copper fist DNA binding domain
46544454440CRAL/TRIO domain
11112118BTB/POZ domain
1111111119Inhibitor of Apoptosis domain
22222222218Voltage gated chloride channel
1111111119Caspase domain
23211110GDSL-like Lipase/Acylhydrolase
1111111119Poly-adenylate binding protein, unique domain
1111111119POLO box duplicated region
1534312120Seripauperin and TIP1 family
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
10991110119111090ABC transporter transmembrane region
1269Integrase core domain
44444444436FAD binding domain
1111111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111111119HAMP domain
22222222218ribosomal L5P family C-terminus
87878788869Insulinase (Peptidase family M16)
22222222218Dehydrogenase E1 component
1111111119Lumazine binding domain
67666666655Elongation factor G C-terminus
55555555545HMGL-like
45555555544DnaJ central domain
22244444228Ribosomal protein L1p/L10e family
33344434432Cation transporting ATPase, C-terminus
54455445642Cation transporter/ATPase, N-terminus
1111116dUTPase
44444544437Aconitase C-terminal domain
33333333327Amino acid kinase family
1111111119N-(5'phosphoribosyl)anthranilate (PRA) isomerase
11122222215Acyl transferase domain
1438Dihydrodipicolinate synthetase family
2217218888819119haloacid dehalogenase-like hydrolase
22Glycosyl hydrolases family 2
22211121315Glycosyl hydrolases family 18
1111111119Proliferating cell nuclear antigen, N-terminal domain
1111111119Adenylosuccinate synthetase
22222222218Peptidase S24-like
22222222218Inorganic pyrophosphatase
11122212214Glycosyl hydrolases family 16
1111111119Glycosyl hydrolases family 15
53422232427NADH:flavin oxidoreductase / NADH oxidase family
33322232222HhH-GPD superfamily base excision DNA repair protein
1111111119AIR carboxylase
3115GMC oxidoreductase
22222222218Asparagine synthase
21211111111Fungal cellulose binding domain
77756676758Septin
1111111119EF-1 guanine nucleotide exchange domain
1111111119Homoserine dehydrogenase
32553555235Flavin-binding monooxygenase-like
33333333327tRNA synthetases class I (E and Q), catalytic domain
1111111119tRNA synthetases class I (R)
33133353327XPG N-terminal domain
22222122419Metallo-beta-lactamase superfamily
33333333327Choline/Carnitine o-acyltransferase
14111111112Putative esterase
1111111119Ferrochelatase
33333333327Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111111119Arginosuccinate synthase
1111111119Electron transfer flavoprotein FAD-binding domain
33344434