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PFAM Domains • Issatchenkia orientalis ATCC 32196 v2.0
Annotations/GenomesCanar1Dekbr2Hanpo2Isori2Issori2Issorie2Ogapa1Picme2TotalAnnotation Description
PFAMs
5,1224,9105,0065,6585,6605,6756,2644,88843,183
3332323232323332258ATPase family associated with various cellular activities (AAA)
2824223025292330211ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
1414141214131614111Elongation factor Tu GTP binding domain
101088109111076Helix-loop-helix DNA-binding domain
11211129Hsp20/alpha crystallin family
9995699965Hsp70 protein
8786666855KH domain
11114SH2 domain
18171799101018108SH3 domain
10101011101111982Actin
15151244341370Ankyrin repeat
6664326538ADP-ribosylation factor family
9551012105864Eukaryotic aspartyl protease
3433333426Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
121111119Cytochrome c
3122222216Double-stranded RNA binding motif
1111141111049EF hand
1311174Fe-4S binding domain
11Fibronectin type III domain
231222214Globin
5666866851Glutathione S-transferase, C-terminal domain
121111119Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
3352335428Homeodomain
3333333324lactate/malate dehydrogenase, NAD binding domain
2233333221Myosin head (motor domain)
6455555540Cytochrome P450
10194979594989996774Protein kinase domain
751065610756Pyridine nucleotide-disulphide oxidoreductase
2118221919192219159Ras family
6355554538Response regulator receiver domain
4322222118RNase H
5253524242404646373RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
3222222217Copper/zinc superoxide dismutase (SODC)
111111118Iron/manganese superoxide dismutases, alpha-hairpin domain
4443334429Subtilase family
3028321919193414195Sugar (and other) transporter
89877710763Thioredoxin
112Trypsin
3333333324Tubulin/FtsZ family, GTPase domain
4133341513141933202Zinc finger, C2H2 type
26282611230114Zinc finger, C3HC4 type (RING finger)
8821113327Zinc knuckle
2222222216Protein-tyrosine phosphatase
1715251414132217137short chain dehydrogenase
1616191818171916139Zinc-binding dehydrogenase
3222222217Thiolase, N-terminal domain
2222222216Beta-ketoacyl synthase, N-terminal domain
33321113172Fe-2S iron-sulfur cluster binding domain
111111118Enolase, C-terminal TIM barrel domain
33Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
7779889863Glutamine amidotransferase class-I
10910101010101079TCP-1/cpn60 chaperonin family
111111118Glutamine synthetase, catalytic domain
111111118Triosephosphate isomerase
99813131313987E1-E2 ATPase
10109699101073Core histone H2A/H2B/H3/H4
1621112115Alpha amylase, catalytic domain
1111111310Phorbol esters/diacylglycerol binding domain (C1 domain)
5563335535Bacterial transferase hexapeptide (six repeats)
3246555333tRNA synthetases class I (I, L, M and V)
10101089911774Cyclin, N-terminal domain
12221210Carboxylesterase family
4444444432DNA polymerase family B
3333323323ATP synthase subunit C
2222222216Peroxidase
1113Beta-lactamase
11NADH dehydrogenase
2120211517172020151Calcineurin-like phosphoesterase
2114444121Cellulase (glycosyl hydrolase family 5)
6666666547tRNA synthetases class II (D, K and N)
3231313031313230248Mitochondrial carrier protein
131211131213131097Aminotransferase class I and II
8884445849Phosphoribosyl transferase domain
81087678660Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2222222216Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
111115Bacterial regulatory helix-turn-helix proteins, AraC family
2121112111Chaperonin 10 Kd subunit
97115559657C2 domain
131213101010101290PH domain
6365555540bZIP transcription factor
101011101110121084Aldehyde dehydrogenase family
7062736563616880542Fungal Zn(2)-Cys(6) binuclear cluster domain
1315141312131212104Cytochrome b5-like Heme/Steroid binding domain
1214Oxidoreductase molybdopterin binding domain
7998888865Oxidoreductase NAD-binding domain
1819161817181719142SNF2 family N-terminal domain
2322222217Ribosomal protein S7p/S5e
1414141413141414111Ubiquitin-conjugating enzyme
6666566647Isocitrate/isopropylmalate dehydrogenase
3223332321Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
2222222216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
2224342221Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
11Trypsin and protease inhibitor
22222222162-oxoacid dehydrogenases acyltransferase (catalytic domain)
111111118Catalase
111115UDP-glucoronosyl and UDP-glucosyl transferase
10587668959Aminotransferase class-III
2211222214Ribosomal protein S19
111111118DNA gyrase B
6454445436Thiamine pyrophosphate enzyme, central domain
4332233323Lyase
2222222216Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111118Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
111111118Pyruvate kinase, barrel domain
9486658450Kinesin motor domain
2423232321222323182DnaJ domain
1414131415141414112Proteasome subunit
1111151112Major intrinsic protein
111111118ATP synthase
1111111183'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
1122222113Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
67758510755Ubiquitin family
3444444431Cofilin/tropomyosin-type actin-binding protein
11111111814-3-3 protein
1221111110Alkaline phosphatase
111111118Zinc carboxypeptidase
1513161212121617113Aldo/keto reductase family
13141477761381Myb-like DNA-binding domain
3323323322Forkhead domain
11Glycosyl hydrolases family 32 N-terminal domain
1112132112Ribosomal protein L16p/L10e
2221221214Ribosomal protein S14p/S29e
3233333323FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
11114
6775554847Flavodoxin
111111118Calreticulin family
5554445537Aminotransferase class-V
111111118Ribonucleotide reductase, small chain
3332313236333933269DEAD/DEAH box helicase
5656595355535658446Helicase conserved C-terminal domain
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
111111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2212221214Ribosomal protein L5
3333333324Pyridoxal-dependent decarboxylase conserved domain
111111118Citrate synthase, C-terminal domain
4434444431GHMP kinases N terminal domain
5656766647Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
5567886752Pyridoxal-phosphate dependent enzyme
7767867755NUDIX domain
3345554332pfkB family carbohydrate kinase
11Luciferase-like monooxygenase
2223222217Ribosomal protein L3
2222222216Ribosomal protein L11, RNA binding domain
1212128109121287Histidine phosphatase superfamily (branch 1)
111111118Thymidylate synthase
4444444432ATP synthase alpha/beta chain, C terminal domain
5545555438Calponin homology (CH) domain
4543233428Glutamine amidotransferases class-II
2222222216Ribosomal protein S15
111111118Fructose-1-6-bisphosphatase, N-terminal domain
2222222216Ribonucleotide reductase, all-alpha domain
2222222115Ribosomal protein S2
2222222216SRF-type transcription factor (DNA-binding and dimerisation domain)
7886668756GATA zinc finger
2725291919171930185Amino acid permease
2222222216Prolyl oligopeptidase family
3133333322Ribosomal protein L30p/L7e
4444445332Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4444454433Aconitase family (aconitate hydratase)
2431114521Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
111111118Nucleoside diphosphate kinase
2222222216Ribosomal protein S10p/S20e
512213418Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
2212222215SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
3432223221Ribosomal protein L6
3333333324Polyprenyl synthetase
4434443329Hexokinase
3334444328Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
2242222218Rieske [2Fe-2S] domain
33Proton-conducting membrane transporter
6775657750Biotin-requiring enzyme
2222222216Phosphofructokinase
2222222216Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
4441224223FGGY family of carbohydrate kinases, N-terminal domain
3222222217Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
2222222216Transcription factor TFIIB repeat
7667674750Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
2222212215Chromo (CHRromatin Organisation MOdifier) domain
111111118Phosphatidylinositol-specific phospholipase C, Y domain
1212222113Phosphatidylinositol-specific phospholipase C, X domain
6454445436D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
111111118Malic enzyme, N-terminal domain
1111111186-phosphogluconate dehydrogenase, C-terminal domain
2323331320Multicopper oxidase
5465555540WW domain
1112222112Ribosomal RNA adenine dimethylase
10444443336Yeast PIR protein repeat
8791867473778786661WD domain, G-beta repeat
3433334326Heavy-metal-associated domain
3343333325Adenylate kinase
3233333222Phosphoglucomutase/phosphomannomutase, C-terminal domain
3333333324Ribosomal protein S8
1112221111Ribosomal protein S11
3333333324LIM domain
1112224114Regulator of chromosome condensation (RCC1) repeat
2222222216Ribosomal protein S13/S18
2222322217chorismate binding enzyme
545565554060s Acidic ribosomal protein
4444441429Prenyltransferase and squalene oxidase repeat
7664445642Protein kinase C terminal domain
111111118Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
99989891071Bromodomain
112Acyl-CoA dehydrogenase, C-terminal domain
1515131314131414111Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
111111118Ribonuclease T2 family
4444444432HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
3233333323Serine carboxypeptidase
7887778759Phosphatidylinositol 3- and 4-kinase
3131113114Transketolase, thiamine diphosphate binding domain
111111118Inositol monophosphatase family
5555555540Glutaredoxin
1131113112Isocitrate lyase family
2222222216Serine hydroxymethyltransferase
2222323218Ribosomal protein L10
1432222218KOW motif
1113Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
3233333222RF-1 domain
3353435430Sodium:solute symporter family
121111119Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
1112221111IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
6666666648Protein phosphatase 2C
2233233220Nucleotidyl transferase
111111118Carbonic anhydrase
1112224114Phosphoribulokinase / Uridine kinase family
6566665747Fatty acid desaturase
6544444536MutS domain V
111111118Delta-aminolevulinic acid dehydratase
3552224427Arginase family
6666666648MCM P-loop domain
1112222112Squalene/phytoene synthase
7778888760FHA domain
7676667651AMP-binding enzyme
2222222216G-protein alpha subunit
5565555541HMG (high mobility group) box
3123232319His Kinase A (phospho-acceptor) domain
2222222216Armadillo/beta-catenin-like repeat
12131610101081594Tetratricopeptide repeat
2221112213Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
10997769966BRCA1 C Terminus (BRCT) domain
4443333428Glycosyl transferases group 1
2222222216Glycosyl transferase family 2
11114SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
2222222216CoA-ligase
3333333324Phosphopantetheine attachment site
2222222216Formyl transferase
7688888760Metallopeptidase family M24
1210111321949Leucine Rich Repeat
17161877751491alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
2221113113PB1 domain
2222222216Staphylococcal nuclease homologue
6677889758Rab-GTPase-TBC domain
111111118Tudor domain
111111118WH1 domain
2221112213Zinc finger, ZZ type
111111118HRDC domain
7677776754CBS domain
2222222216Ribosomal protein L13
2122222114Ribosomal protein L4/L1 family
3333434326S1 RNA binding domain
11111117HIUase/Transthyretin family
4444344431AhpC/TSA family
4444444432tRNA synthetases class I (W and Y)
1231112213UvrD/REP helicase N-terminal domain
5556665341Rhodanese-like domain
2122222114Universal stress protein family
1191088861171Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
1111221211C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
8887777860tRNA synthetase class II core domain (G, H, P, S and T)
2212221214SpoU rRNA Methylase family
2222222216Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
1214PDZ domain
3232223724Class II Aldolase and Adducin N-terminal domain
3223333221Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
2323233321Fes/CIP4, and EFC/F-BAR homology domain
232222215IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
2221111212Phospholipase D Active site motif
1222411Regulator of G protein signaling domain
3323333222GTPase-activator protein for Ras-like GTPase
4444444432RasGEF domain
4444544433RasGEF N-terminal motif
8777878759RhoGAP domain
3224334223RhoGEF domain
3443333326SPRY domain
3333333324RNA polymerase Rpb1, domain 2
111111118Guanylate kinase
4343323325Gelsolin repeat
7665557748UBA/TS-N domain
1412109810121186PHD-finger
11111117GGL domain
5555555540HECT-domain (ubiquitin-transferase)
112Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
3322221520Ribonuclease III domain
3235554330Region in Clathrin and VPS
2333323322RanBP1 domain
11111117PPIC-type PPIASE domain
111121119Zn-finger in Ran binding protein and others
981088771067Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1113B-box zinc finger
14157111149F-box domain
111111118Elongation factor 1 gamma, conserved domain
1113Calpain family cysteine protease
222221213Copper fist DNA binding domain
4654445436CRAL/TRIO domain
1111217BTB/POZ domain
111111118Inhibitor of Apoptosis domain
2222222216Voltage gated chloride channel
111111118Caspase domain
232119GDSL-like Lipase/Acylhydrolase
111111118Poly-adenylate binding protein, unique domain
111111118POLO box duplicated region
153431118Seripauperin and TIP1 family
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
109911101191079ABC transporter transmembrane region
123Integrase core domain
4444444432FAD binding domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111111118HAMP domain
2222222216ribosomal L5P family C-terminus
8787878861Insulinase (Peptidase family M16)
2222222216Dehydrogenase E1 component
111111118Lumazine binding domain
6766666649Elongation factor G C-terminus
5555555540HMGL-like
4555555539DnaJ central domain
2224444224Ribosomal protein L1p/L10e family
3334443428Cation transporting ATPase, C-terminus
5445544637Cation transporter/ATPase, N-terminus
111115dUTPase
4444454433Aconitase C-terminal domain
3333333324Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
1112222213Acyl transferase domain
1438Dihydrodipicolinate synthetase family
221721888819111haloacid dehalogenase-like hydrolase
22Glycosyl hydrolases family 2
2221112314Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
111111118Adenylosuccinate synthetase
2222222216Peptidase S24-like
2222222216Inorganic pyrophosphatase
1112221212Glycosyl hydrolases family 16
111111118Glycosyl hydrolases family 15
5342223425NADH:flavin oxidoreductase / NADH oxidase family
3332223220HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
3115GMC oxidoreductase
2222222216Asparagine synthase
2121111110Fungal cellulose binding domain
7775667752Septin
111111118EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
3255355230Flavin-binding monooxygenase-like
3333333324tRNA synthetases class I (E and Q), catalytic domain
111111118tRNA synthetases class I (R)
3313335324XPG N-terminal domain
2222212417Metallo-beta-lactamase superfamily
3333333324Choline/Carnitine o-acyltransferase
1411111111Putative esterase
111111118Ferrochelatase
3333333324Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111111118Arginosuccinate synthase
111111118Electron transfer flavoprotein FAD-binding domain
3334443327RNB domain
11Dioxygenase
1112224215CNH domain
1121112110Diacylglycerol kinase catalytic domain
4656666645Dual specificity phosphatase, catalytic domain
1212112212P21-Rho-binding domain
111111121112121292PX domain
2221222215Ras association (RalGDS/AF-6) domain
5564556541UBX domain
4445554435VHS domain
111111118Phosphoinositide 3-kinase C2
2222223217DAHP synthetase I family
4464444535Carbon-nitrogen hydrolase
111111118Prephenate dehydratase
3441211218Syntaxin
6664444640Pumilio-family RNA binding repeat
6777677754Histone-like transcription factor (CBF/NF-Y) and archaeal histone
111111118Pterin binding enzyme
111111118ER lumen protein retaining receptor
2222222216tRNA N6-adenosine threonylcarbamoyltransferase
111111118Histidinol dehydrogenase
2222222216impB/mucB/samB family
11114
111111118Ribosomal L15
1113333116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1113Ribosomal prokaryotic L21 protein
111111118Ribosomal L28 family
111111118Ribosomal L29 protein
1111116Ribosomal L39 protein
111111118Ribosomal S17
211111119Ribulose-phosphate 3 epimerase family
111121119Translationally controlled tumour protein
11125Ring hydroxylating alpha subunit (catalytic domain)
3334443428RNA pseudouridylate synthase
4343334327Histone deacetylase domain
2213231317POT family
111111118PWWP domain
8785448650SET domain
111111118Isochorismatase family