PFAM Domains • Arthroascus fermentans 17710 v1.0
Annotations/GenomesArtfe1_2Ascru1Canar1Nadfu1Picst3Sacce1TotalAnnotation Description
PFAMs
4,7415,3295,1225,3244,5715,53530,622
333133372833195ATPase family associated with various cellular activities (AAA)
223028263131168ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
13171414141688Elongation factor Tu GTP binding domain
10131087755Helix-loop-helix DNA-binding domain
4414215Hsp20/alpha crystallin family
910910121464Hsp70 protein
88898849KH domain
1111116SH2 domain
182218212222123SH3 domain
111010118959Actin
12121515141886Ankyrin repeat
67677740ADP-ribosylation factor family
3011969772Eukaryotic aspartyl protease
32344319Cyclic nucleotide-binding domain
1212129Cytochrome c
35321216Double-stranded RNA binding motif
15201115131185EF hand
1111154Fe-4S binding domain
1113Fibronectin type III domain
27222217Globin
49542630Glutathione S-transferase, C-terminal domain
22124314Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
55363830Homeodomain
11Laminin EGF domain
24323317lactate/malate dehydrogenase, NAD binding domain
33253521Myosin head (motor domain)
346410330Cytochrome P450
971021019895114607Protein kinase domain
67798946Pyridine nucleotide-disulphide oxidoreductase
223521242324149Ras family
54696434Response regulator receiver domain
141118RNase H
475152584748303RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
11Reverse transcriptase (RNA-dependent DNA polymerase)
22313112Copper/zinc superoxide dismutase (SODC)
1111217Iron/manganese superoxide dismutases, alpha-hairpin domain
510454432Subtilase family
18830146034164Sugar (and other) transporter
898991053Thioredoxin
131117Trypsin
34343421Tubulin/FtsZ family, GTPase domain
11von Willebrand factor type A domain
323741414938238Zinc finger, C2H2 type
303026312422163Zinc finger, C3HC4 type (RING finger)
34835629Zinc knuckle
26222317Protein-tyrosine phosphatase
141617203113111short chain dehydrogenase
122116152417105Zinc-binding dehydrogenase
23334217Thiolase, N-terminal domain
22222212Beta-ketoacyl synthase, N-terminal domain
333332172Fe-2S iron-sulfur cluster binding domain
12111511Enolase, C-terminal TIM barrel domain
78787946Glutamine amidotransferase class-I
10111010101061TCP-1/cpn60 chaperonin family
2112118Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
712911111262E1-E2 ATPase
12141013111070Core histone H2A/H2B/H3/H4
11146821Alpha amylase, catalytic domain
1211117Phorbol esters/diacylglycerol binding domain (C1 domain)
55565430Bacterial transferase hexapeptide (six repeats)
44347325tRNA synthetases class I (I, L, M and V)
11111010111366Cyclin, N-terminal domain
33Carboxylesterase family
44444424DNA polymerase family B
33333318ATP synthase subunit C
22222111Peroxidase
11125Beta-lactamase
191921181821116Calcineurin-like phosphoesterase
43234420Cellulase (glycosyl hydrolase family 5)
66666636tRNA synthetases class II (D, K and N)
313432383434203Mitochondrial carrier protein
10151311101170Aminotransferase class I and II
101081081157Phosphoribosyl transferase domain
768128849Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22232314Ribosomal protein S4/S9 N-terminal domain
22232314Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
1122118Chaperonin 10 Kd subunit
9109991157C2 domain
9121315152488PH domain
66685839bZIP transcription factor
71010910955Aldehyde dehydrogenase family
486170398553356Fungal Zn(2)-Cys(6) binuclear cluster domain
1317131314777Cytochrome b5-like Heme/Steroid binding domain
65777840Oxidoreductase NAD-binding domain
171918181817107SNF2 family N-terminal domain
22232213Ribosomal protein S7p/S5e
12131415131481Ubiquitin-conjugating enzyme
69666740Isocitrate/isopropylmalate dehydrogenase
22333316Ribosomal Proteins L2, RNA binding domain
1112128Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
34233318Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
11Annexin
222322132-oxoacid dehydrogenases acyltransferase (catalytic domain)
1112128Catalase
11Disintegrin
461087439Aminotransferase class-III
32232214Ribosomal protein S19
1111116DNA gyrase B
42643726Thiamine pyrophosphate enzyme, central domain
44434322Lyase
22222313Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1212118Adenylate and Guanylate cyclase catalytic domain
1112117ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
1212129Pyruvate kinase, barrel domain
679106644Kinesin motor domain
232424252421141DnaJ domain
14141414141484Proteasome subunit
12111410Major intrinsic protein
1111116ATP synthase
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
22121210Ribosomal protein L22p/L17e
22222313Ribosomal protein L14p/L23e
796116948Ubiquitin family
44323319Cofilin/tropomyosin-type actin-binding protein
111212814-3-3 protein
1111217Alkaline phosphatase
1111116Zinc carboxypeptidase
810158171674Aldo/keto reductase family
12151314121581Myb-like DNA-binding domain
32333418Forkhead domain
112Glycosyl hydrolases family 32 N-terminal domain
1111116Ribosomal protein L16p/L10e
22231313Ribosomal protein S14p/S29e
35333421FKBP-type peptidyl-prolyl cis-trans isomerase
24122314Glutathione peroxidase
1111127
58678741Flavodoxin
1112117Calreticulin family
64543325Aminotransferase class-V
2111128Ribonucleotide reductase, small chain
333533363756230DEAD/DEAH box helicase
555856595679363Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
111115Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11221310Ribosomal protein L5
14333216Pyridoxal-dependent decarboxylase conserved domain
22131312Citrate synthase, C-terminal domain
45454628GHMP kinases N terminal domain
55555732Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
68588742Pyridoxal-phosphate dependent enzyme
877108747NUDIX domain
43342420pfkB family carbohydrate kinase
1113Glycosyl hydrolases family 28
22222212Ribosomal protein L3
22232314Ribosomal protein L11, RNA binding domain
1113121381269Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
44444424ATP synthase alpha/beta chain, C terminal domain
46555429Calponin homology (CH) domain
55464731Glutamine amidotransferases class-II
22222212Ribosomal protein S15
1211117Fructose-1-6-bisphosphatase, N-terminal domain
1121229Ribonucleotide reductase, all-alpha domain
22222313Ribosomal protein S2
21222413SRF-type transcription factor (DNA-binding and dimerisation domain)
8971091053GATA zinc finger
134627233624169Amino acid permease
22222212Prolyl oligopeptidase family
32342418Ribosomal protein L30p/L7e
61483628Histidine phosphatase superfamily (branch 2)
11114Respiratory-chain NADH dehydrogenase, 30 Kd subunit
45445426Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
61232317Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
22221211Ribosomal protein S10p/S20e
24532319Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
11222210SecY translocase
11114Respiratory-chain NADH dehydrogenase, 49 Kd subunit
33332317Ribosomal protein L6
33333318Polyprenyl synthetase
33443522Hexokinase
33343319Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
13212110Rieske [2Fe-2S] domain
66676839Biotin-requiring enzyme
22232213Phosphofructokinase
22232314Ribosomal protein S17
1111127Hydroxymethylglutaryl-coenzyme A reductase
33433319FGGY family of carbohydrate kinases, N-terminal domain
43343320Enoyl-CoA hydratase/isomerase
22232314Ribosomal protein S9/S16
22222313Transcription factor TFIIB repeat
66766637Cytidine and deoxycytidylate deaminase zinc-binding region
11114Molybdopterin oxidoreductase
22221211Chromo (CHRromatin Organisation MOdifier) domain
1111116Phosphatidylinositol-specific phospholipase C, Y domain
1111217Phosphatidylinositol-specific phospholipase C, X domain
48644430D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1111116Malic enzyme, N-terminal domain
12111286-phosphogluconate dehydrogenase, C-terminal domain
22222313Multicopper oxidase
465107537WW domain
22122211Ribosomal RNA adenine dimethylase
53101028Yeast PIR protein repeat
8588871048488536WD domain, G-beta repeat
23335319Heavy-metal-associated domain
34333319Adenylate kinase
22322314Phosphoglucomutase/phosphomannomutase, C-terminal domain
11322211Ribosomal protein S8
1112128Ribosomal protein S11
54333422LIM domain
1212118Regulator of chromosome condensation (RCC1) repeat
22242315Ribosomal protein S13/S18
22222212chorismate binding enzyme
5555553060s Acidic ribosomal protein
44444424Prenyltransferase and squalene oxidase repeat
79784843Protein kinase C terminal domain
1111116Single-strand binding protein family
1112128S-adenosylmethionine synthetase, N-terminal domain
10991191058Bromodomain
538Acyl-CoA dehydrogenase, C-terminal domain
13151513161688Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
3111219Ribonuclease T2 family
44444525HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
47334324Serine carboxypeptidase
98778948Phosphatidylinositol 3- and 4-kinase
11322211Transketolase, thiamine diphosphate binding domain
1111138Inositol monophosphatase family
45574732Glutaredoxin
22121210Isocitrate lyase family
22222212Serine hydroxymethyltransferase
112Iron-containing alcohol dehydrogenase
22232213Ribosomal protein L10
33176727KOW motif
1111116Ribosomal protein L34
22323214RF-1 domain
41316116Sodium:solute symporter family
111115Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
11111510IMP dehydrogenase / GMP reductase domain
1112117Glucose-6-phosphate dehydrogenase, NAD binding domain
68686741Protein phosphatase 2C
13232213Nucleotidyl transferase
1211218Carbonic anhydrase
21122210Phosphoribulokinase / Uridine kinase family
57656130Fatty acid desaturase
47644631MutS domain V
1111116Delta-aminolevulinic acid dehydratase
23313113Arginase family
66666636MCM P-loop domain
1111116Squalene/phytoene synthase
687861449FHA domain
916711101063AMP-binding enzyme
22222212G-protein alpha subunit
55565733HMG (high mobility group) box
22372117His Kinase A (phospho-acceptor) domain
42232215Armadillo/beta-catenin-like repeat
172112221421107Tetratricopeptide repeat
12223212Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
8710991053BRCA1 C Terminus (BRCT) domain
44444424Glycosyl transferases group 1
22222212Glycosyl transferase family 2
11114SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
23232214CoA-ligase
33323216Phosphopantetheine attachment site
22222212Formyl transferase
78786642Metallopeptidase family M24
1512512162911208Leucine Rich Repeat
14121711191588alpha/beta hydrolase fold
33343319RNA polymerase Rpb2, domain 6
31222111PB1 domain
22222111Staphylococcal nuclease homologue
686108846Rab-GTPase-TBC domain
111115Tudor domain
1111116WH1 domain
33212213Zinc finger, ZZ type
1211128HRDC domain
8771171050CBS domain
22222313Ribosomal protein L13
12231312Ribosomal protein L4/L1 family
11Clp protease
32342418S1 RNA binding domain
11114HIUase/Transthyretin family
34456426AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
21122311UvrD/REP helicase N-terminal domain
54554932Rhodanese-like domain
112217Universal stress protein family
11121118131378Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
811888952tRNA synthetase class II core domain (G, H, P, S and T)
22222212SpoU rRNA Methylase family
12222211Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
1311129PDZ domain
12332112Class II Aldolase and Adducin N-terminal domain
14343520Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
34254422Fes/CIP4, and EFC/F-BAR homology domain
22233315IQ calmodulin-binding motif
12222211Phosphoinositide 3-kinase family, accessory domain (PIK domain)
22222212Phospholipase D Active site motif
112Regulator of G protein signaling domain
55353425GTPase-activator protein for Ras-like GTPase
35444424RasGEF domain
34441420RasGEF N-terminal motif
81381181159RhoGAP domain
33322316RhoGEF domain
44353322SPRY domain
33333318RNA polymerase Rpb1, domain 2
44Flocculin repeat
1111116Guanylate kinase
44433422Gelsolin repeat
45764935UBA/TS-N domain
11121414141378PHD-finger
11114GGL domain
54555529HECT-domain (ubiquitin-transferase)
1113Helix-hairpin-helix motif
1111127MSP (Major sperm protein) domain
24312315Ribonuclease III domain
22322314Region in Clathrin and VPS
23233316RanBP1 domain
1111217PPIC-type PPIASE domain
1111116Zn-finger in Ran binding protein and others
7119147755Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
10221415151288F-box domain
1212129Elongation factor 1 gamma, conserved domain
1113Calpain family cysteine protease
21232313Copper fist DNA binding domain
55445629CRAL/TRIO domain
131218BTB/POZ domain
1111116Inhibitor of Apoptosis domain
32233114Voltage gated chloride channel
18122115Caspase domain
13212110GDSL-like Lipase/Acylhydrolase
1112117Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
113133Seripauperin and TIP1 family
7111012141064ABC transporter transmembrane region
123Integrase core domain
23433318FAD binding domain
11Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111317HAMP domain
22232314ribosomal L5P family C-terminus
2323DUP family
79877745Insulinase (Peptidase family M16)
22232213Dehydrogenase E1 component
1111116Lumazine binding domain
66676738Elongation factor G C-terminus
43555628HMGL-like
44445526DnaJ central domain
22222313Ribosomal protein L1p/L10e family
33345523Cation transporting ATPase, C-terminus
58564735Cation transporter/ATPase, N-terminus
1111116dUTPase
45445426Aconitase C-terminal domain
34343421Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
1111217Acyl transferase domain
1135Dihydrodipicolinate synthetase family
112022191825115haloacid dehalogenase-like hydrolase
33Glycosyl hydrolases family 2
214234236Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
1111116Adenylosuccinate synthetase
21159Asparaginase, N-terminal
33231315Peptidase S24-like
22222212Inorganic pyrophosphatase
75123321Glycosyl hydrolases family 16
1211117Glycosyl hydrolases family 15
375213232NADH:flavin oxidoreductase / NADH oxidase family
223-hydroxyacyl-CoA dehydrogenase, C-terminal domain
11Glycosyl hydrolase family 20, catalytic domain
22313415HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
325GMC oxidoreductase
22221312Asparagine synthase
1427Fungal cellulose binding domain
77747739Septin
1112117EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
3339Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
1111127tRNA synthetases class I (R)
33333520XPG N-terminal domain
32222415Metallo-beta-lactamase superfamily
11F5/8 type C domain
34323318Choline/Carnitine o-acyltransferase
1111116Putative esterase
1311118Ferrochelatase
33343319Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
44343321RNB domain
2125Dioxygenase
33122314CNH domain
2111128Diacylglycerol kinase catalytic domain
77485637Dual specificity phosphatase, catalytic domain
11111510P21-Rho-binding domain
13131113131477PX domain
23232214Ras association (RalGDS/AF-6) domain
34535727UBX domain
34453423VHS domain
111115Phosphoinositide 3-kinase C2
23222213DAHP synthetase I family
44447528Carbon-nitrogen hydrolase
1111116Prephenate dehydratase
53343523Syntaxin
66676738Pumilio-family RNA binding repeat
56665432Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
1111116ER lumen protein retaining receptor
22232213Glycoprotease family
1111116Histidinol dehydrogenase
22222212impB/mucB/samB family
1111116
1112128Ribosomal L15
1112128Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1113Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111127Ribosomal L29 protein
1112117Ribosomal L39 protein
1112128Ribosomal S17
1121117Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
33333419RNA pseudouridylate synthase
35456528Histone deacetylase domain
11224111POT family
34112213PWWP domain
868115846SET domain
1111116Isochorismatase family
111115Permease family
1112117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
34434523XPG I-region
1113DNA photolyase
11Cation-independent mannose-6-phosphate receptor repeat
1113Sulfatase
12111176,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
1221219Acyl CoA binding protein
34443422Cullin family
24333419FAD binding domain
25441319EamA-like transporter family
22221211
87888847ThiF family
1111228Ribosomal family S4e
42212112Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
24423318Ammonium Transporter Family
33334420Sulfate permease family
11114MATH domain
1111116Dehydratase family
11421211Transaldolase/Fructose-6-phosphate aldolase
11Mechanosensitive ion channel
1111116GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44453424Adaptor complexes medium subunit family
54565530Exonuclease
22222212Dipeptidyl peptidase IV (DPP IV) N-terminal region
1141815Glycosyl hydrolase family 3 N terminal domain
1112128Ribosomal protein L44
22Sodium:sulfate symporter transmembrane region
2111218DNA-dependent RNA polymerase
11FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
22212211Nucleosome assembly protein (NAP)
34444524Synaptobrevin
1111116GMP synthase C terminal domain
24512418Adenosine/AMP deaminase
54444627Oxidoreductase FAD-binding domain
22222212Histidine biosynthesis protein
33333419Glycosyltransferase family 20
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
112PAS fold
11
12115Probable molybdopterin binding domain
44444424Sec1 family
23222213GDP dissociation inhibitor
45432321Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
44444424Initiation factor 2 subunit family
11PQQ enzyme repeat
22221211Electron transfer flavoprotein domain
111115Uricase
11132210Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111318GTP1/OBG
1112218Gamma-glutamyltranspeptidase
123Ribosomal L40e family
1112117GrpE
22222212TatD related DNase
111115Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
22Receptor L domain
23232214Dynamin central region
11112176-O-methylguanine DNA methyltransferase, DNA binding domain
11136Bacteriorhodopsin-like protein
1111127Carboxyl transferase domain
22222212UbiA prenyltransferase family
43742323Endoribonuclease L-PSP
11MarR family
64565834Cys/Met metabolism PLP-dependent enzyme
1111318Glycosyl hydrolases family 31
11114NADH ubiquinone oxidoreductase, 20 Kd subunit
10111061047ABC-2 type transporter
2111229Amino-transferase class IV
44454526CDP-alcohol phosphatidyltransferase
11Calpain large subunit, domain III
22222212ATP dependent DNA ligase domain
13322112FMN-dependent dehydrogenase
1111116Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
11111163-beta hydroxysteroid dehydrogenase/isomerase family
1111116Glycosyl hydrolases family 38 N-terminal domain
111115Nitrite and sulphite reductase 4Fe-4S domain
1111116Ribosomal protein S18
1111116Clathrin light chain
1113Galactose-1-phosphate uridyl transferase, N-terminal domain
22122110Ubiquitin carboxyl-terminal hydrolase, family 1
11
1112128Ribosomal protein S19e
1112128Ribosomal protein S6e
44444424Transcription factor S-II (TFIIS)
1112117Surface antigen
46555732emp24/gp25L/p24 family/GOLD
22222111NifU-like domain
1111116Cyclin-dependent kinase regulatory subunit
11Asparaginase
11Dihydrodipicolinate reductase, N-terminus
1111116F-actin capping protein, beta subunit
1221118Fructose-bisphosphate aldolase class-II
232