PFAM Domains • Decorospora gaudefroyi v1.0
Annotations/GenomesAltal1Coclu2Cocmi1Decga1Pyrtr1Pyrtt1Settu1TotalAnnotation Description
PFAMs
9,6118,8208,7107,9316,7138,5168,66158,962
11137 transmembrane receptor (rhodopsin family)
50403944394639297ATPase family associated with various cellular activities (AAA)
41423836404039276ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
1414141412131495Elongation factor Tu GTP binding domain
1214151211121490Helix-loop-helix DNA-binding domain
333312318Hsp20/alpha crystallin family
777777749Hsp70 protein
788998857KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
23232322242323161SH3 domain
101010107101067Actin
65867071585253455Ankyrin repeat
478422330PAN domain
777777749ADP-ribosylation factor family
111314912131284Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
11112129Double-stranded RNA binding motif
17172015191717122EF hand
121112194Fe-4S binding domain
323232217Fibronectin type III domain
11111117Globin
1688764857Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11989910864Homeodomain
444333425lactate/malate dehydrogenase, NAD binding domain
444455430Myosin head (motor domain)
124106124678798133739Cytochrome P450
127103104130104112106786Protein kinase domain
1416141312141598Pyridine nucleotide-disulphide oxidoreductase
26252324222325168Ras family
27242523242625174Response regulator receiver domain
245516RNase H
56605861585658407RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
26430Reverse transcriptase (RNA-dependent DNA polymerase)
222222214Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
17111212991282Subtilase family
89716652886264492Sugar (and other) transporter
11111110991273Thioredoxin
543222321Trypsin
444444428Tubulin/FtsZ family, GTPase domain
344334425von Willebrand factor type A domain
82586065705561451Zinc finger, C2H2 type
55515665436051381Zinc finger, C3HC4 type (RING finger)
5211023201273Zinc knuckle
222222214Protein-tyrosine phosphatase
16914012592113113131883short chain dehydrogenase
71596644606368431Zinc-binding dehydrogenase
666676643Thiolase, N-terminal domain
14182214232631148Beta-ketoacyl synthase, N-terminal domain
6674666412Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
22Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
888769955Glutamine amidotransferase class-I
1010101010111071TCP-1/cpn60 chaperonin family
112ATP synthase A chain
433333322Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
18171716161517116E1-E2 ATPase
8888317979Core histone H2A/H2B/H3/H4
112Copper binding proteins, plastocyanin/azurin family
677667645Alpha amylase, catalytic domain
221222112Phorbol esters/diacylglycerol binding domain (C1 domain)
877788954Bacterial transferase hexapeptide (six repeats)
443385431tRNA synthetases class I (I, L, M and V)
777787952Cyclin, N-terminal domain
35252517222223169Carboxylesterase family
4444420DNA polymerase family B
444444428ATP synthase subunit C
787577748Peroxidase
1467478551Beta-lactamase
332333320C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
29252627262927189Calcineurin-like phosphoesterase
13881069761Cellulase (glycosyl hydrolase family 5)
887777751tRNA synthetases class II (D, K and N)
39404239404140281Mitochondrial carrier protein
1921151491516109Aminotransferase class I and II
98810991063Phosphoribosyl transferase domain
1212121212121284Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11Ribosome inactivating protein
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222113Ribosomal protein S12/S23
11215Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
1313121211121184C2 domain
18211918182019133PH domain
1099889861bZIP transcription factor
22252615212219150Aldehyde dehydrogenase family
240179179147921071601,104Fungal Zn(2)-Cys(6) binuclear cluster domain
24242620222426166Cytochrome b5-like Heme/Steroid binding domain
434433324Oxidoreductase molybdopterin binding domain
16151813101616104Oxidoreductase NAD-binding domain
27252725262624180SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
27252226212525171Ubiquitin-conjugating enzyme
767677646Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
141211965562Chitin recognition protein
423322218Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
746366638Cupin
222222214Annexin
21111118Eukaryotic-type carbonic anhydrase
1111116Chalcone and stilbene synthases, N-terminal domain
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
644455432Catalase
11111117Disintegrin
213UDP-glucoronosyl and UDP-glucosyl transferase
9911789861Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
465534431Thiamine pyrophosphate enzyme, central domain
444444428Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
311232315Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
112Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
9101081010966Kinesin motor domain
34302935323031221DnaJ domain
1414141414141498Proteasome subunit
986977854Major intrinsic protein
11111117ATP synthase
333133319Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
11111117Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
1212111211121181Ubiquitin family
555525532Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
666445637Alkaline phosphatase
988477851Zinc carboxypeptidase
37272525213227194Aldo/keto reductase family
1313141614131699Myb-like DNA-binding domain
444444428Forkhead domain
443133321Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
333213318Ribosomal protein S14p/S29e
555555535FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
11111117
888677852Flavodoxin
22Protamine P1
11111117Calreticulin family
21121196101079Common central domain of tyrosinase
8118838955Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
45393941524742305DEAD/DEAH box helicase
78757473778073530Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
222222214Ribosomal protein L5
676666643Pyridoxal-dependent decarboxylase conserved domain
233322217Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
777667747Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
111010910141175Pyridoxal-phosphate dependent enzyme
16161515141315104NUDIX domain
556455535pfkB family carbohydrate kinase
834365635Glycosyl hydrolases family 28
1111116Luciferase-like monooxygenase
222222214Ribosomal protein L3
222212213Ribosomal protein L11, RNA binding domain
1513131410131290Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
134Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
555545534Calponin homology (CH) domain
556455535Glutamine amidotransferases class-II
222222214Ribosomal protein S15
11111117Thaumatin family
212222213Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222223215SRF-type transcription factor (DNA-binding and dimerisation domain)
766656541GATA zinc finger
45454127323332255Amino acid permease
666426636Prolyl oligopeptidase family
333322319Ribosomal protein L30p/L7e
1212121010121280Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
544445430Aconitase family (aconitate hydratase)
765444535Glycosyl hydrolase family 10
323323319Glycosyl hydrolases family 17
222212213Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
111126Tetraspanin family
121221110Ribosomal protein S10p/S20e
544544632Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
748455336Polyprenyl synthetase
544555432Hexokinase
3547951144Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
11RTX calcium-binding nonapeptide repeat (4 copies)
856655540Rieske [2Fe-2S] domain
123Phytochrome region
347Proton-conducting membrane transporter
9810899962Biotin-requiring enzyme
11111117Phosphofructokinase
222122213Ribosomal protein S17
11111128Hydroxymethylglutaryl-coenzyme A reductase
333333321FGGY family of carbohydrate kinases, N-terminal domain
11111117Sodium:dicarboxylate symporter family
13121179101072Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
676665642Cytidine and deoxycytidylate deaminase zinc-binding region
11121118Molybdopterin oxidoreductase
57572121048Chromo (CHRromatin Organisation MOdifier) domain
333333321Phosphatidylinositol-specific phospholipase C, Y domain
343443324Phosphatidylinositol-specific phospholipase C, X domain
10878781058D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
2222122136-phosphogluconate dehydrogenase, C-terminal domain
91111798863Multicopper oxidase
121111910111175WW domain
11111117Ribosomal RNA adenine dimethylase
22222212Yeast PIR protein repeat
103117114111103101117766WD domain, G-beta repeat
765544435Heavy-metal-associated domain
333444324Adenylate kinase
222232215Phosphoglucomutase/phosphomannomutase, C-terminal domain
222211111Ribosomal protein S8
11111117Ribosomal protein S11
444444428LIM domain
13116Matrixin
122222213Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222223215chorismate binding enzyme
44433342560s Acidic ribosomal protein
445444429Prenyltransferase and squalene oxidase repeat
565556537Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
777779852Bromodomain
1314151212121492Acyl-CoA dehydrogenase, C-terminal domain
15141517171414106Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
222222214Ribonuclease T2 family
333333321HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
111111710101171Serine carboxypeptidase
888878855Phosphatidylinositol 3- and 4-kinase
322122214Transketolase, thiamine diphosphate binding domain
555334530Glycosyl hydrolases family 11
555545534Inositol monophosphatase family
444424426Glutaredoxin
533323322Isocitrate lyase family
222222214Serine hydroxymethyltransferase
444444428Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
333463325KOW motif
111115Ribosomal protein L34
1113Negative factor, (F-Protein) or Nef
222222214RF-1 domain
343234322Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
111115DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
777777749Protein phosphatase 2C
333333321Nucleotidyl transferase
332232217Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
987666749Fatty acid desaturase
666666642MutS domain V
11111117Delta-aminolevulinic acid dehydratase
645455433Arginase family
666666642MCM P-loop domain
222222214Squalene/phytoene synthase
9978910860FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
495041345010954387AMP-binding enzyme
444444428G-protein alpha subunit
6881098756HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
24202020232321151His Kinase A (phospho-acceptor) domain
333333321Armadillo/beta-catenin-like repeat
30372723282727199Tetratricopeptide repeat
232233217Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
121191211111177BRCA1 C Terminus (BRCT) domain
777677647Glycosyl transferases group 1
646485336Glycosyl transferase family 2
323452221SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1065222431Pectate lyase
11211219ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
18262114256031195Phosphopantetheine attachment site
333333321Formyl transferase
899878958Metallopeptidase family M24
15151615151615107Leucine Rich Repeat
57534235213938285alpha/beta hydrolase fold
333334322RNA polymerase Rpb2, domain 6
443434426PB1 domain
222221213Staphylococcal nuclease homologue
1210121210111279Rab-GTPase-TBC domain
11111117Tudor domain
11111128WH1 domain
543433325Zinc finger, ZZ type
311322315HRDC domain
988899859CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
433334323S1 RNA binding domain
1111116HIUase/Transthyretin family
655677440AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
1121128UvrD/REP helicase N-terminal domain
454634430Rhodanese-like domain
212222213Universal stress protein family
47454133323635269Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
8999910862tRNA synthetase class II core domain (G, H, P, S and T)
222222214SpoU rRNA Methylase family
112Phage integrase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
112122312PDZ domain
798657749Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555555535Fes/CIP4, and EFC/F-BAR homology domain
565667540IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
555554534Phospholipase D Active site motif
11111117Regulator of G protein signaling domain
333333321GTPase-activator protein for Ras-like GTPase
444444428RasGEF domain
444434427RasGEF N-terminal motif
778888854RhoGAP domain
666566641RhoGEF domain
322332217SPRY domain
333333321RNA polymerase Rpb1, domain 2
11121118Guanylate kinase
443333323Gelsolin repeat
101089108964UBA/TS-N domain
19171817161716120PHD-finger
1111116GGL domain
555555535HECT-domain (ubiquitin-transferase)
121221211Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
959645644Ribonuclease III domain
222212213Region in Clathrin and VPS
222222214RanBP1 domain
222222214PPIC-type PPIASE domain
311117Zn-finger in Ran binding protein and others
19181718202020132Zinc finger C-x8-C-x5-C-x3-H type (and similar)
222312214Poly(ADP-ribose) polymerase catalytic domain
22211210Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
89676458725961470F-box domain
11111117Elongation factor 1 gamma, conserved domain
333333321Calpain family cysteine protease
12222211Copper fist DNA binding domain
555545534CRAL/TRIO domain
1911181561522106BTB/POZ domain
112Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
433344324Voltage gated chloride channel
223322216Caspase domain
17991210111078GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
18191716182218128ABC transporter transmembrane region
21223Integrase core domain
788557848FAD binding domain
71166155712114Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
555555535Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
666656641Elongation factor G C-terminus
444445429HMGL-like
444444428DnaJ central domain
222322215Starch binding domain
222222214Ribosomal protein L1p/L10e family
899778957Cation transporting ATPase, C-terminus
101111107101170Cation transporter/ATPase, N-terminus
11111117dUTPase
544445430Aconitase C-terminal domain
333334322Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
13182213202429139Acyl transferase domain
11111117Urease beta subunit
776455842Dihydrodipicolinate synthetase family
39343732323234240haloacid dehalogenase-like hydrolase
776365640Glycosyl hydrolases family 2
12131414910981Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
11111117Acylphosphatase
11111117Adenylosuccinate synthetase
333113317Asparaginase, N-terminal
11111117Peptidase S24-like
11111117Inorganic pyrophosphatase
10910998964Glycosyl hydrolases family 16
222322215Glycosyl hydrolases family 15
865466641NADH:flavin oxidoreductase / NADH oxidase family
3432223193-hydroxyacyl-CoA dehydrogenase, C-terminal domain
333233522Glycosyl hydrolase family 20, catalytic domain
444544429HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
39242512262326175GMC oxidoreductase
333223420Asparagine synthase
131211119101076Fungal cellulose binding domain
666666642Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
212128Flavin-binding monooxygenase-like
333333321tRNA synthetases class I (E and Q), catalytic domain
212221212tRNA synthetases class I (R)
444444529XPG N-terminal domain
16121612591282Metallo-beta-lactamase superfamily
322123114F5/8 type C domain
222232215Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Ferrochelatase
222212213Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
12211119Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
656544434Dioxygenase
333333321CNH domain
11111117Diacylglycerol kinase catalytic domain
888728849Dual specificity phosphatase, catalytic domain
77
333323320P21-Rho-binding domain
1213131312111387PX domain
323322318Ras association (RalGDS/AF-6) domain
666656641UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
222232215DAHP synthetase I family
1381279101069Carbon-nitrogen hydrolase
221122212N-acetyltransferase
11111117Prephenate dehydratase
554534733Syntaxin
555555535Pumilio-family RNA binding repeat
777767748Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
222222214Glycoprotease family
11112129Histidinol dehydrogenase
543434427impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
456233427Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
678687749POT family
11111117PWWP domain
23181822121719129SET domain
141312710111077Isochorismatase family
555445533Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
655566639XPG I-region
11111117Acetokinase family
333333