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PFAM Domains • Lactarius indigo 2018DUKE089 v1.0
Annotations/GenomesLacaka1Lacdel1Lachat1Lachen1Lacind1Lacpsa1Lacpse1Lacqui1Lacsan1Lacviv1TotalAnnotation Description
PFAMs
9,72711,57210,8699,77110,4569,65511,68710,59010,8639,273104,463
41465141484759404538456ATPase family associated with various cellular activities (AAA)
50614949605568416343539ABC transporter
54555451010457ATP synthase alpha/beta family, nucleotide-binding domain
16171617161517171714162Elongation factor Tu GTP binding domain
12151212111311131212123Helix-loop-helix DNA-binding domain
5786714447567Hsp20/alpha crystallin family
927223016163114127184Hsp70 protein
678687877771KH domain
15182014191717181718173SH3 domain
11111111121212131411118Actin
60993829362256384843469Ankyrin repeat
97101097898784ADP-ribosylation factor family
40504438424855473736437Eukaryotic aspartyl protease
334333434333Cyclic nucleotide-binding domain
112111111111Cytochrome c
815591198129793Double-stranded RNA binding motif
333333344332EF hand
557636665453Glutathione S-transferase, C-terminal domain
121112211113Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
109109101110111210102Homeodomain
232222223222lactate/malate dehydrogenase, NAD binding domain
686755555557Myosin head (motor domain)
1752042101632011852131772051611,894Cytochrome P450
1702372222192212022882032221622,146Protein kinase domain
911121519814999115Pyridine nucleotide-disulphide oxidoreductase
35423937443841374236391Ras family
877787976773Response regulator receiver domain
6163212239650RNase H
70827268696376686763698RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
111111112111Copper/zinc superoxide dismutase (SODC)
243223222224Iron/manganese superoxide dismutases, alpha-hairpin domain
1101711891084266168195168961,313Subtilase family
24293226262730272825274Sugar (and other) transporter
1010111212912171010113Thioredoxin
676568787767Tubulin/FtsZ family, GTPase domain
25222123302130233427256Zinc finger, C2H2 type
586676797768Zinc finger, C3HC4 type (RING finger)
1212101210986189106Zinc knuckle
232222222221Protein-tyrosine phosphatase
45615658715771435646564short chain dehydrogenase
17161715171720181916172Zinc-binding dehydrogenase
7681168766570Thiolase, N-terminal domain
222222322221Beta-ketoacyl synthase, N-terminal domain
1321211121152Fe-2S iron-sulfur cluster binding domain
111111131112Enolase, C-terminal TIM barrel domain
123Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
9108888989885Glutamine amidotransferase class-I
11111111101011131110109TCP-1/cpn60 chaperonin family
22ATP synthase A chain
545454564547Glutamine synthetase, catalytic domain
111111111110Triosephosphate isomerase
23342422292326302427262E1-E2 ATPase
17182120412023241817219Core histone H2A/H2B/H3/H4
111111141113Copper binding proteins, plastocyanin/azurin family
11811813121179999Alpha amylase, catalytic domain
41245871249671Phorbol esters/diacylglycerol binding domain (C1 domain)
333333343331Bacterial transferase hexapeptide (six repeats)
565459454451tRNA synthetases class I (I, L, M and V)
99118239211089117Cyclin, N-terminal domain
24232720252721332225247Carboxylesterase family
444444444440DNA polymerase family B
534333574340ATP synthase subunit C
444444424438Peroxidase
466535626447Beta-lactamase
455446555447C-5 cytosine-specific DNA methylase
1124NADH dehydrogenase
19222420211825232220214Calcineurin-like phosphoesterase
98889871010986Cellulase (glycosyl hydrolase family 5)
555556555551tRNA synthetases class II (D, K and N)
44544744434155414039448Mitochondrial carrier protein
11recA bacterial DNA recombination protein
23273127212134192723253Aminotransferase class I and II
454454434441Phosphoribosyl transferase domain
15161514201523141614162Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111110Phosphoglycerate kinase
223122222220Ribosomal protein S4/S9 N-terminal domain
222232222221Ribosomal protein S12/S23
111111311112Chaperonin 10 Kd subunit
29423623323347143128315C2 domain
91010791089111093PH domain
1013101012109121213111bZIP transcription factor
15171518161714141514155Aldehyde dehydrogenase family
49575450494561445557521Fungal Zn(2)-Cys(6) binuclear cluster domain
21211820192022182020199Cytochrome b5-like Heme/Steroid binding domain
545556575552Oxidoreductase NAD-binding domain
21302326202234252520246SNF2 family N-terminal domain
222225332225Ribosomal protein S7p/S5e
21212119242024232220215Ubiquitin-conjugating enzyme
5156556665564Isocitrate/isopropylmalate dehydrogenase
223221232221Ribosomal Proteins L2, RNA binding domain
222222222220Hsp90 protein
332223232224Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
111112121112Cysteine-rich secretory protein family
111111211111Ribosomal protein S3, C-terminal domain
2114Cupin
3343333333312-oxoacid dehydrogenases acyltransferase (catalytic domain)
111211112112Catalase
111111111110Disintegrin
122232233323UDP-glucoronosyl and UDP-glucosyl transferase
777688665666Aminotransferase class-III
22322232220Ribosomal protein S19
111251112116DNA gyrase B
222222222220Thiamine pyrophosphate enzyme, central domain
343334533334Lyase
111111212112Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111112121112Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
111111111110Indole-3-glycerol phosphate synthase
222222222220Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
109107991399994Kinesin motor domain
28313230313430303328307DnaJ domain
15191714151416151614155Proteasome subunit
77881111778882Major intrinsic protein
111211111111ATP synthase
1111111111103'5'-cyclic nucleotide phosphodiesterase
111111111110Profilin
222222221219Ribosomal protein L22p/L17e
232332222223Ribosomal protein L14p/L23e
22212018222020181718196Ubiquitin family
566565466554Cofilin/tropomyosin-type actin-binding protein
232431182824514-3-3 protein
111111121111Zinc carboxypeptidase
33384130333343293734351Aldo/keto reductase family
77788811128884Myb-like DNA-binding domain
555555554549Forkhead domain
222222242222Ribosomal protein L16p/L10e
323242223225Ribosomal protein S14p/S29e
445454434441FKBP-type peptidyl-prolyl cis-trans isomerase
434444564543Flavodoxin
111111111110Calreticulin family
4645535132350Common central domain of tyrosinase
97109710968782Aminotransferase class-V
111311111112Ribonucleotide reductase, small chain
58805660576166635453608DEAD/DEAH box helicase
8210691918283103918472885Helicase conserved C-terminal domain
131111321115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
223232223223Ribosomal protein L23
111121111111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111121111111Ribosomal protein L5
6657541055558Pyridoxal-dependent decarboxylase conserved domain
444445434440Citrate synthase, C-terminal domain
455545564447GHMP kinases N terminal domain
565556666555Biotin carboxylase, N-terminal domain
111111111110Tryptophan synthase alpha chain
899877888779Pyridoxal-phosphate dependent enzyme
13151615161415151213144NUDIX domain
434344345438pfkB family carbohydrate kinase
223222322222Ribosomal protein L3
222242222222Ribosomal protein L11, RNA binding domain
111010129911910899Histidine phosphatase superfamily (branch 1)
12111222113Thymidylate synthase
478664759460ATP synthase alpha/beta chain, C terminal domain
454444455443Calponin homology (CH) domain
232223212221Glutamine amidotransferases class-II
322342312224Ribosomal protein S15
3453575396279Thaumatin family
1111111119Fructose-1-6-bisphosphatase, N-terminal domain
121111111111Ribonucleotide reductase, all-alpha domain
222222322221Ribosomal protein S2
222222222220SRF-type transcription factor (DNA-binding and dimerisation domain)
13121112191012131312127GATA zinc finger
8714776888881Amino acid permease
916131178169910108Prolyl oligopeptidase family
221262321223Ribosomal protein L30p/L7e
8781068776673Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444444440Aconitase family (aconitate hydratase)
11211221112Glycosyl hydrolases family 17
212222213219Ribosomal protein S5, N-terminal domain
443242323330Nucleoside diphosphate kinase
333233423531Tetraspanin family
124123222221Ribosomal protein S10p/S20e
433534523436Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
111111111110Carbohydrate phosphorylase
212112621119SecY translocase
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222220Ribosomal protein L6
998656677669Polyprenyl synthetase
232224224225Hexokinase
898988898883Dynamin family
121112111112Transcription factor TFIID (or TATA-binding protein, TBP)
222222232221Rieske [2Fe-2S] domain
156Proton-conducting membrane transporter
778778778773Biotin-requiring enzyme
112111111111Phosphofructokinase
222212222118Ribosomal protein S17
111111111110Hydroxymethylglutaryl-coenzyme A reductase
444333353335FGGY family of carbohydrate kinases, N-terminal domain
810108989129790Enoyl-CoA hydratase/isomerase
222232222221Ribosomal protein S9/S16
344433424334Transcription factor TFIIB repeat
6554810776664Cytidine and deoxycytidylate deaminase zinc-binding region
121121111112Molybdopterin oxidoreductase
997699786777Chromo (CHRromatin Organisation MOdifier) domain
111111211111Phosphatidylinositol-specific phospholipase C, Y domain
222212311218Phosphatidylinositol-specific phospholipase C, X domain
565455443445D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
333333344332Malic enzyme, N-terminal domain
1111111111106-phosphogluconate dehydrogenase, C-terminal domain
13181310151412201715147Multicopper oxidase
11777717988788WW domain
222122222219Ribosomal RNA adenine dimethylase
1341481401431321291621211471281,384WD domain, G-beta repeat
565696696563Heavy-metal-associated domain
455444455444Adenylate kinase
322222221220Phosphoglucomutase/phosphomannomutase, C-terminal domain
222222222220Ribosomal protein S8
222232222221Ribosomal protein S11
79107997108783LIM domain
343344433334Regulator of chromosome condensation (RCC1) repeat
234342324330Ribosomal protein S13/S18
222222222220chorismate binding enzyme
33533433233260s Acidic ribosomal protein
455242434437Prenyltransferase and squalene oxidase repeat
456666665757Protein kinase C terminal domain
111111111110Single-strand binding protein family
111111112111S-adenosylmethionine synthetase, N-terminal domain
11121811141212111210123Bromodomain
8888898108883Acyl-CoA dehydrogenase, C-terminal domain
15151615201621201414166Ubiquitin carboxyl-terminal hydrolase
111111111110Ribosomal protein L36
235332222226Ribonuclease T2 family
444444544441HSF-type DNA-binding
222222222220SRP54-type protein, GTPase domain
121111111111Urease alpha-subunit, N-terminal domain
16121614141619171012146Serine carboxypeptidase
99108979811888Phosphatidylinositol 3- and 4-kinase
222222322221Transketolase, thiamine diphosphate binding domain
232142222222Inositol monophosphatase family
5556846105559Glutaredoxin
222222222220Isocitrate lyase family
111111111110Serine hydroxymethyltransferase
222222222220Iron-containing alcohol dehydrogenase
221222222219Ribosomal protein L10
534597474553KOW motif
111121111111Ribosomal protein L34
111111111110Ribosomal protein L33
333353333332RF-1 domain
111111111110Sodium:solute symporter family
111111111110Imidazoleglycerol-phosphate dehydratase
11111111210DNA polymerase family A
112111111111IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
787777787772Protein phosphatase 2C
333322223326Nucleotidyl transferase
664442427443Carbonic anhydrase
111111111110Phosphoribulokinase / Uridine kinase family
776555656557Fatty acid desaturase
697666677666MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
334243433332Arginase family
81710127616610799MCM P-loop domain
422223222223Squalene/phytoene synthase
12131212121212101211118FHA domain
22NADH-ubiquinone/plastoquinone oxidoreductase chain 6
16161714161617231816169AMP-binding enzyme
17292519191827112614205G-protein alpha subunit
14171511241517171714161HMG (high mobility group) box
33NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1214Cytochrome c oxidase subunit III
433354333334His Kinase A (phospho-acceptor) domain
222232222221Armadillo/beta-catenin-like repeat
16131111141815301615159Tetratricopeptide repeat
333353464438Ion transport protein
132261114122DNA gyrase/topoisomerase IV, subunit A
465365565449BRCA1 C Terminus (BRCT) domain
6610455465657Glycosyl transferases group 1
433243333331Glycosyl transferase family 2
111111211111SAM domain (Sterile alpha motif)
323322322325linker histone H1 and H5 family
112111121112Ribosomal protein L7/L12 C-terminal domain
121111111111Urease, gamma subunit
333333333330CoA-ligase
333333334331Phosphopantetheine attachment site
222222222220Formyl transferase
11131481091213119110Metallopeptidase family M24
221312313220Leucine Rich Repeat
10867767136777alpha/beta hydrolase fold
333333333330RNA polymerase Rpb2, domain 6
648556777560PB1 domain
222222233222Staphylococcal nuclease homologue
12131211141212121213123Rab-GTPase-TBC domain
111111122112Tudor domain
1111111119WH1 domain
555584454550Zinc finger, ZZ type
111121119HRDC domain
796686875668CBS domain
222232222221Ribosomal protein L13
223222122220Ribosomal protein L4/L1 family
111111111110Clp protease
545355344442S1 RNA binding domain
1111111119HIUase/Transthyretin family
581371651048581AhpC/TSA family
475454565449tRNA synthetases class I (W and Y)
1315UvrD/REP helicase N-terminal domain
87106107898881Rhodanese-like domain
222222323222Universal stress protein family
13131314151413141414137Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
111111122112C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
576565566556tRNA synthetase class II core domain (G, H, P, S and T)
222222222220Tetrapyrrole (Corrin/Porphyrin) Methylases
122111211113Glycosyl transferase family, a/b domain
112111111111Class II Aldolase and Adducin N-terminal domain
333343343332Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
23294021352233292719278Fes/CIP4, and EFC/F-BAR homology domain
222222222220IQ calmodulin-binding motif
223222223222Phosphoinositide 3-kinase family, accessory domain (PIK domain)
21222221216Phospholipase D Active site motif
333333223328Regulator of G protein signaling domain
444444444440GTPase-activator protein for Ras-like GTPase
91098813998992RasGEF domain
8898712887883RasGEF N-terminal motif
31606141474755464333464RhoGAP domain
13141616141413191514148RhoGEF domain
323333333329SPRY domain
433333333331RNA polymerase Rpb1, domain 2
111111111110Guanylate kinase
223332333327Gelsolin repeat
7810897869880UBA/TS-N domain
14161415181815161716159PHD-finger
232222432224GGL domain
7875835866595HECT-domain (ubiquitin-transferase)
111112211112Helix-hairpin-helix motif
111111111110MSP (Major sperm protein) domain
343364354338Ribonuclease III domain
444445544442Region in Clathrin and VPS
333332333329RanBP1 domain
212232212219PPIC-type PPIASE domain
332314232225Zn-finger in Ran binding protein and others
1213129141116131312125Zinc finger C-x8-C-x5-C-x3-H type (and similar)
121138B-box zinc finger
112111111111Poly(ADP-ribose) polymerase catalytic domain
222251222222Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
37503328282137262821309F-box domain
112112111112Elongation factor 1 gamma, conserved domain
111111111110Calpain family cysteine protease
221222232220Copper fist DNA binding domain
777877889775CRAL/TRIO domain
77123117961108211282133821,014BTB/POZ domain
1113Ricin-type beta-trefoil lectin domain
111111111110Inhibitor of Apoptosis domain
3333113444341Voltage gated chloride channel
1518267252315261513183Caspase domain
11111117GDSL-like Lipase/Acylhydrolase
222222222220Poly-adenylate binding protein, unique domain
21371542126POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
27322321302634123218255ABC transporter transmembrane region
333333333330FAD binding domain
111111111110S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111311911120HAMP domain
222222222220ribosomal L5P family C-terminus
656649675559Insulinase (Peptidase family M16)
4649441444457Dehydrogenase E1 component
111111111110Lumazine binding domain
667776767665Elongation factor G C-terminus
445464444443HMGL-like
444345544441DnaJ central domain
7410487844662Starch binding domain
455523634340Ribosomal protein L1p/L10e family
8311915151420111915167Cation transporting ATPase, C-terminus
822121061311111115119Cation transporter/ATPase, N-terminus
111121112112dUTPase
444444444440Aconitase C-terminal domain