PFAM Domains • Rhizodiscina lignyota CBS 133067 v1.0
Annotations/GenomesErebi1Neopa1Patat1Phycit1Rhili1Sacpr1Totfu1TotalAnnotation Description
PFAMs
7,2168,5057,1837,2839,8447,3238,52155,875
117 transmembrane receptor (rhodopsin family)
43464541573954325ATPase family associated with various cellular activities (AAA)
35443529353347258ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
1414131414141497Elongation factor Tu GTP binding domain
11791010101067Helix-loop-helix DNA-binding domain
332362625Hsp20/alpha crystallin family
777777951Hsp70 protein
9989991063KH domain
11111117SH2 domain
23182122222224152SH3 domain
10991010101068Actin
54313535602151287Ankyrin repeat
32131414PAN domain
777777850ADP-ribosylation factor family
918812201621104Eukaryotic aspartyl protease
334444426Cyclic nucleotide-binding domain
11121118Cytochrome c
12312211Double-stranded RNA binding motif
20202019201921139EF hand
21111174Fe-4S binding domain
222212213Fibronectin type III domain
1111116Globin
121661229111096Glutathione S-transferase, C-terminal domain
12111118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
8576127853Homeodomain
422222317lactate/malate dehydrogenase, NAD binding domain
1113Low-density lipoprotein receptor repeat class B
454444530Myosin head (motor domain)
6119956681526564665Cytochrome P450
1069213197113105129773Protein kinase domain
17211411281219122Pyridine nucleotide-disulphide oxidoreductase
23202222262231166Ras family
9111518141931117Response regulator receiver domain
348452632RNase H
62545963635961421RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Reverse transcriptase (RNA-dependent DNA polymerase)
322232317Copper/zinc superoxide dismutase (SODC)
212222213Iron/manganese superoxide dismutases, alpha-hairpin domain
91147571558Subtilase family
299935511055042411Sugar (and other) transporter
99101010101371Thioredoxin
11111117Trypsin
454444429Tubulin/FtsZ family, GTPase domain
623462528von Willebrand factor type A domain
55415151625362375Zinc finger, C2H2 type
43304543484259310Zinc finger, C3HC4 type (RING finger)
4115553538Zinc knuckle
212222213Protein-tyrosine phosphatase
94158888425597137913short chain dehydrogenase
418936471194867447Zinc-binding dehydrogenase
565555637Thiolase, N-terminal domain
62988158983Beta-ketoacyl synthase, N-terminal domain
3455554312Fe-2S iron-sulfur cluster binding domain
11112118Enolase, C-terminal TIM barrel domain
878889856Glutamine amidotransferase class-I
101091010101069TCP-1/cpn60 chaperonin family
323232217Glutamine synthetase, catalytic domain
122222112Triosephosphate isomerase
1416131314121597E1-E2 ATPase
10878781159Core histone H2A/H2B/H3/H4
585374436Alpha amylase, catalytic domain
322221214Phorbol esters/diacylglycerol binding domain (C1 domain)
8108787755Bacterial transferase hexapeptide (six repeats)
333343423tRNA synthetases class I (I, L, M and V)
757876646Cyclin, N-terminal domain
19441024392330189Carboxylesterase family
444544429DNA polymerase family B
543444630ATP synthase subunit C
4944641243Peroxidase
715261942174Beta-lactamase
22333417C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
21202123362129171Calcineurin-like phosphoesterase
41215910111273Cellulase (glycosyl hydrolase family 5)
777777749tRNA synthetases class II (D, K and N)
37383738403740267Mitochondrial carrier protein
112recA bacterial DNA recombination protein
13171514181514106Aminotransferase class I and II
988888958Phosphoribosyl transferase domain
1010101010101272Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
112Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
1210121112111179C2 domain
18181918171817125PH domain
10888117860bZIP transcription factor
18271513301321137Aldehyde dehydrogenase family
11810210412022395124886Fungal Zn(2)-Cys(6) binuclear cluster domain
21242019242320151Cytochrome b5-like Heme/Steroid binding domain
363164326Oxidoreductase molybdopterin binding domain
1116131216151497Oxidoreductase NAD-binding domain
22202225272527168SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
25212322242324162Ubiquitin-conjugating enzyme
576686644Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
441513624Chitin recognition protein
362352324Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
441383629Cupin
222222214Annexin
122128Eukaryotic-type carbonic anhydrase
3433333222-oxoacid dehydrogenases acyltransferase (catalytic domain)
433384631Catalase
1111116Disintegrin
11UDP-glucoronosyl and UDP-glucosyl transferase
594885746Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
5845105643Thiamine pyrophosphate enzyme, central domain
344483329Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
12111118Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
1211117Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
10101010991169Kinesin motor domain
24242726253136193DnaJ domain
1414141414141498Proteasome subunit
29471091354Major intrinsic protein
11111117ATP synthase
151433219Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
112212110Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
139111213111483Ubiquitin family
444444529Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
754453533Alkaline phosphatase
243111315Zinc carboxypeptidase
16362120412030184Aldo/keto reductase family
1011161314131087Myb-like DNA-binding domain
434444528Forkhead domain
41211110Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
212223214Ribosomal protein S14p/S29e
444444630FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
221221111
5115688649Flavodoxin
11111117Calreticulin family
91112373954Common central domain of tyrosinase
787677951Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
47304139383940274DEAD/DEAH box helicase
81657171737382516Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
122222213Ribosomal protein L23
131212111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
222211111Ribosomal protein L5
686576543Pyridoxal-dependent decarboxylase conserved domain
232223216Citrate synthase, C-terminal domain
555555636GHMP kinases N terminal domain
784787748Biotin carboxylase, N-terminal domain
12111118Tryptophan synthase alpha chain
91010111210971Pyridoxal-phosphate dependent enzyme
169151314121897NUDIX domain
635454633pfkB family carbohydrate kinase
1015115941Glycosyl hydrolases family 28
112116Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
1011111213121483Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
11Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
445445531Calponin homology (CH) domain
465646536Glutamine amidotransferases class-II
222322215Ribosomal protein S15
11112129Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222222214SRF-type transcription factor (DNA-binding and dimerisation domain)
726876541GATA zinc finger
20472931543140252Amino acid permease
333343625Prolyl oligopeptidase family
122211211Ribosomal protein L30p/L7e
610710911962Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
555474434Aconitase family (aconitate hydratase)
153122216Glycosyl hydrolase family 10
473455432Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
112Tetraspanin family
212121211Ribosomal protein S10p/S20e
254572732Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222322215Ribosomal protein L6
374333326Polyprenyl synthetase
345554329Hexokinase
12675115955Dynamin family
113112211Transcription factor TFIID (or TATA-binding protein, TBP)
434494634Rieske [2Fe-2S] domain
11114Phytochrome region
987898958Biotin-requiring enzyme
11111117Phosphofructokinase
212121110Ribosomal protein S17
12111118Hydroxymethylglutaryl-coenzyme A reductase
343333423FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
14121082581592Enoyl-CoA hydratase/isomerase
212222213Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
766788951Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
435564532Chromo (CHRromatin Organisation MOdifier) domain
223232317Phosphatidylinositol-specific phospholipase C, Y domain
233343422Phosphatidylinositol-specific phospholipase C, X domain
81398148666D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
2222342176-phosphogluconate dehydrogenase, C-terminal domain
82191415131393Multicopper oxidase
999910111269WW domain
11211118Ribosomal RNA adenine dimethylase
12321312Yeast PIR protein repeat
12884110104104102109741WD domain, G-beta repeat
564564636Heavy-metal-associated domain
11Transferrin
333343322Adenylate kinase
222232215Phosphoglucomutase/phosphomannomutase, C-terminal domain
11111218Ribosomal protein S8
12111129Ribosomal protein S11
434444427LIM domain
1113Matrixin
312212314Regulator of chromosome condensation (RCC1) repeat
221222213Ribosomal protein S13/S18
212222213chorismate binding enzyme
33333332160s Acidic ribosomal protein
445444429Prenyltransferase and squalene oxidase repeat
666665540Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
677777950Bromodomain
1713111219131398Acyl-CoA dehydrogenase, C-terminal domain
14151316161517106Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
132333419Ribonuclease T2 family
333333321HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
51391115121378Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
221232113Transketolase, thiamine diphosphate binding domain
11327Glycosyl hydrolases family 11
442454528Inositol monophosphatase family
444444529Glutaredoxin
472373228Isocitrate lyase family
222221213Serine hydroxymethyltransferase
243453223Iron-containing alcohol dehydrogenase
222212112Ribosomal protein L10
333432119KOW motif
11114Ribosomal protein L34
323333219RF-1 domain
352583531Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
565666640Protein phosphatase 2C
233223318Nucleotidyl transferase
423171725Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
584656539Fatty acid desaturase
666666642MutS domain V
11Interleukin-6/G-CSF/MGF family
11111117Delta-aminolevulinic acid dehydratase
444474431Arginase family
676666643MCM P-loop domain
122232214Squalene/phytoene synthase
6599961155FHA domain
43623538694249338AMP-binding enzyme
333333422G-protein alpha subunit
7688781054HMG (high mobility group) box
56111610162791His Kinase A (phospho-acceptor) domain
233333219Armadillo/beta-catenin-like repeat
24202422272125163Tetratricopeptide repeat
443545328Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
1010121111121480BRCA1 C Terminus (BRCT) domain
766566743Glycosyl transferases group 1
643556938Glycosyl transferase family 2
113323518SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
46223219Pectate lyase
41122111ribonuclease
11111117Urease, gamma subunit
444464430CoA-ligase
9301313211516117Phosphopantetheine attachment site
222232417Formyl transferase
9978128861Metallopeptidase family M24
1311151514141698Leucine Rich Repeat
30492327703543277alpha/beta hydrolase fold
332433321RNA polymerase Rpb2, domain 6
334333322PB1 domain
222222214Staphylococcal nuclease homologue
99111010111070Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
343334323Zinc finger, ZZ type
21232212HRDC domain
109101010111070CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
344345225S1 RNA binding domain
11111117HIUase/Transthyretin family
455655434AhpC/TSA family
454444429tRNA synthetases class I (W and Y)
1211218UvrD/REP helicase N-terminal domain
645555636Rhodanese-like domain
212222213Universal stress protein family
29313322382239214Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
788878955tRNA synthetase class II core domain (G, H, P, S and T)
22222212SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
121212110Glycosyl transferase family, a/b domain
112212211PDZ domain
3643155743Class II Aldolase and Adducin N-terminal domain
11Influenza non-structural protein (NS1)
424433323Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555555535Fes/CIP4, and EFC/F-BAR homology domain
546556637IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
644574636Phospholipase D Active site motif
11111117Regulator of G protein signaling domain
333333321GTPase-activator protein for Ras-like GTPase
444444428RasGEF domain
434334425RasGEF N-terminal motif
878888956RhoGAP domain
546666639RhoGEF domain
322443321SPRY domain
323333320RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
343344425Gelsolin repeat
977101081061UBA/TS-N domain
1581716211819114PHD-finger
11Filamin/ABP280 repeat
11111117GGL domain
656666540HECT-domain (ubiquitin-transferase)
222222315Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
745444735Ribonuclease III domain
212222213Region in Clathrin and VPS
222222214RanBP1 domain
222222214PPIC-type PPIASE domain
312221112Zn-finger in Ran binding protein and others
16111716141818110Zinc finger C-x8-C-x5-C-x3-H type (and similar)
33131314Poly(ADP-ribose) polymerase catalytic domain
11211118Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
35284646644188348F-box domain
11111117Elongation factor 1 gamma, conserved domain
323232217Calpain family cysteine protease
211222212Copper fist DNA binding domain
565555536CRAL/TRIO domain
9191128341636153BTB/POZ domain
1113Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
444444428Voltage gated chloride channel
211132111Caspase domain
91177971161GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
18191613181426124ABC transporter transmembrane region
4105587443FAD binding domain
3175668752Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
655656538Insulinase (Peptidase family M16)
343333322Dehydrogenase E1 component
11111117Lumazine binding domain
656666641Elongation factor G C-terminus
454454531HMGL-like
444444428DnaJ central domain
11114Starch binding domain
222322215Ribosomal protein L1p/L10e family
886665847Cation transporting ATPase, C-terminus
878787853Cation transporter/ATPase, N-terminus
12111118dUTPase
554475434Aconitase C-terminal domain
333343322Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
53088147880Acyl transferase domain
11111117Urease beta subunit
383564433Dihydrodipicolinate synthetase family
33343030352936227haloacid dehalogenase-like hydrolase
136383226Glycosyl hydrolases family 2
81145481252Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11111117Acylphosphatase
11111117Adenylosuccinate synthetase
122211110Asparaginase, N-terminal
121142314Peptidase S24-like
11111117Inorganic pyrophosphatase
51481411111477Glycosyl hydrolases family 16
122223214Glycosyl hydrolases family 15
51146127853NADH:flavin oxidoreductase / NADH oxidase family
1524543243-hydroxyacyl-CoA dehydrogenase, C-terminal domain
132222113Glycosyl hydrolase family 20, catalytic domain
324445527HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
9381713321810137GMC oxidoreductase
233223217Asparagine synthase
711112123Fungal cellulose binding domain
556555536Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
23217520Flavin-binding monooxygenase-like
333333321tRNA synthetases class I (E and Q), catalytic domain
11112118tRNA synthetases class I (R)
434344426XPG N-terminal domain
1015682481283Metallo-beta-lactamase superfamily
131117F5/8 type C domain
222222315Choline/Carnitine o-acyltransferase
11112118Putative esterase
12111118Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
61433510849Dioxygenase
323323218CNH domain
221222213Diacylglycerol kinase catalytic domain
847797850Dual specificity phosphatase, catalytic domain
322232216P21-Rho-binding domain
119141211111280PX domain
222332317Ras association (RalGDS/AF-6) domain
556555536UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
232232216DAHP synthetase I family
519691511873Carbon-nitrogen hydrolase
131221313N-acetyltransferase
11112118Prephenate dehydratase
443443325Syntaxin
11Pentapeptide repeats (8 copies)
455555534Pumilio-family RNA binding repeat
666666642Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
222222214Glycoprotease family
12112119Histidinol dehydrogenase
434444427impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
1111116Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
124111212Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
554545533Histone deacetylase domain
355444732POT family
11111117PWWP domain
1281612141824104SET domain
711851811868Isochorismatase family
442322320Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
544466534XPG I-region
1111116Acetokinase family
21332314DNA photolyase
11NlpC/P60 family
11Nitroreductase family
2122597239Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
222222214Acyl CoA binding protein
454444429Cullin family
81310926101288FAD binding domain
7